Carg17217 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17217
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLYR motif-containing protein 2
LocationCarg_Chr01: 13018356 .. 13018766 (-)
RNA-Seq ExpressionCarg17217
SyntenyCarg17217
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGAGAATTCGCCATGGTTCTCTCCCTCGATTTACAGGAATTTATTCTCCGTGCAAGAGTGTTGAAACTGTACAGGCATGCTTTAAGAACTGCTCAAAAAGCTCCTGTCCACGCTCGAGGTTAAGCTTTTGATTATGATCTTACAATGAAGTATTCTTTTGATGACGAACATCATCCACTTTCTATGCATTTTTCTTGTCATGATCTTCAGATGTCATTTGAATTCACCCTGGTTTCATTTCGGATTTCGTTAGTTTTGAAATTGTCTGCTTTGAACAGAGGAACTGAGGCATACAATCAGACAAGAAATGGAGAACAACCGCGGCTGCAACGAGAGACGGAAAGTAAGGTTTCTGCTGAGTGAAGGAATAGAGAGATTGAAGCGTTTAGAGGAGATGTTGGATATGCAG

mRNA sequence

GAGGAGAATTCGCCATGGTTCTCTCCCTCGATTTACAGGAATTTATTCTCCGTGCAAGAGTGTTGAAACTGTACAGGCATGCTTTAAGAACTGCTCAAAAAGCTCCTGTCCACGCTCGAGAGGAACTGAGGCATACAATCAGACAAGAAATGGAGAACAACCGCGGCTGCAACGAGAGACGGAAAGTAAGGTTTCTGCTGAGTGAAGGAATAGAGAGATTGAAGCGTTTAGAGGAGATGTTGGATATGCAG

Coding sequence (CDS)

ATGGTTCTCTCCCTCGATTTACAGGAATTTATTCTCCGTGCAAGAGTGTTGAAACTGTACAGGCATGCTTTAAGAACTGCTCAAAAAGCTCCTGTCCACGCTCGAGAGGAACTGAGGCATACAATCAGACAAGAAATGGAGAACAACCGCGGCTGCAACGAGAGACGGAAAGTAAGGTTTCTGCTGAGTGAAGGAATAGAGAGATTGAAGCGTTTAGAGGAGATGTTGGATATGCAG

Protein sequence

MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERRKVRFLLSEGIERLKRLEEMLDMQ
Homology
BLAST of Carg17217 vs. NCBI nr
Match: KAG6608613.1 (hypothetical protein SDJN03_01955, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.5 bits (371), Expect = 4.8e-32
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1   MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERRKVRF 60
           MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERRKVRF
Sbjct: 36  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERRKVRF 95

Query: 61  LLSEGIERLKRLEEMLDMQ 80
           LLSEGIERLKRLEEMLDMQ
Sbjct: 96  LLSEGIERLKRLEEMLDMQ 114

BLAST of Carg17217 vs. NCBI nr
Match: KAG7037930.1 (hypothetical protein SDJN02_01562, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.5 bits (371), Expect = 4.8e-32
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERRKVRF 60
          MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERRKVRF
Sbjct: 1  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERRKVRF 60

Query: 61 LLSEGIERLKRLEEMLDMQ 80
          LLSEGIERLKRLEEMLDMQ
Sbjct: 61 LLSEGIERLKRLEEMLDMQ 79

BLAST of Carg17217 vs. NCBI nr
Match: XP_022941069.1 (uncharacterized protein LOC111446466 [Cucurbita moschata])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERRKVRF 60
          MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNER+KVRF
Sbjct: 1  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERQKVRF 60

Query: 61 LLSEGIERLKRLEEMLDMQ 80
          LLSEGIERLKRLEEMLDMQ
Sbjct: 61 LLSEGIERLKRLEEMLDMQ 79

BLAST of Carg17217 vs. NCBI nr
Match: XP_023524988.1 (uncharacterized protein LOC111788747 [Cucurbita pepo subsp. pepo] >XP_023524989.1 uncharacterized protein LOC111788747 [Cucurbita pepo subsp. pepo] >XP_023524990.1 uncharacterized protein LOC111788747 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.0 bits (354), Expect = 4.5e-30
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0

Query: 1  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERRKVRF 60
          MVL LDLQEFILRARVLKLYR ALRTAQKAPVHAREELRHTIRQEMENNRGCNER+KVRF
Sbjct: 1  MVLPLDLQEFILRARVLKLYRQALRTAQKAPVHAREELRHTIRQEMENNRGCNERQKVRF 60

Query: 61 LLSEGIERLKRLEEMLDMQ 80
          LLSEGIERLKRLEEMLDMQ
Sbjct: 61 LLSEGIERLKRLEEMLDMQ 79

BLAST of Carg17217 vs. NCBI nr
Match: XP_022936861.1 (uncharacterized protein LOC111443321 [Cucurbita moschata] >XP_022936862.1 uncharacterized protein LOC111443321 [Cucurbita moschata])

HSP 1 Score: 134.4 bits (337), Expect = 4.2e-28
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = 0

Query: 1  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERRKVRF 60
          MVL+LDLQEFILRARVLKLYR ALRT +KAPVHAREELRHTIRQEMENNRGC++R+KVRF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60

Query: 61 LLSEGIERLKRLEEMLDMQ 80
          LLSEGIERLKRL+EMLDMQ
Sbjct: 61 LLSEGIERLKRLDEMLDMQ 79

BLAST of Carg17217 vs. ExPASy TrEMBL
Match: A0A6J1FM54 (uncharacterized protein LOC111446466 OS=Cucurbita moschata OX=3662 GN=LOC111446466 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.8e-32
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERRKVRF 60
          MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNER+KVRF
Sbjct: 1  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERQKVRF 60

Query: 61 LLSEGIERLKRLEEMLDMQ 80
          LLSEGIERLKRLEEMLDMQ
Sbjct: 61 LLSEGIERLKRLEEMLDMQ 79

BLAST of Carg17217 vs. ExPASy TrEMBL
Match: A0A6J1F8N3 (uncharacterized protein LOC111443321 OS=Cucurbita moschata OX=3662 GN=LOC111443321 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.0e-28
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = 0

Query: 1  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERRKVRF 60
          MVL+LDLQEFILRARVLKLYR ALRT +KAPVHAREELRHTIRQEMENNRGC++R+KVRF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60

Query: 61 LLSEGIERLKRLEEMLDMQ 80
          LLSEGIERLKRL+EMLDMQ
Sbjct: 61 LLSEGIERLKRLDEMLDMQ 79

BLAST of Carg17217 vs. ExPASy TrEMBL
Match: A0A6J1IY12 (uncharacterized protein LOC111480962 OS=Cucurbita maxima OX=3661 GN=LOC111480962 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.0e-28
Identity = 74/79 (93.67%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 1  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERRKVRF 60
          MVLSLDLQEFILRARVLKLYR ALR AQKAPVHAREELR  IRQEMENNRGCNER+KVRF
Sbjct: 1  MVLSLDLQEFILRARVLKLYRQALRIAQKAPVHAREELRLAIRQEMENNRGCNERQKVRF 60

Query: 61 LLSEGIERLKRLEEMLDMQ 80
          LLSEGIERLKRLEEMLDMQ
Sbjct: 61 LLSEGIERLKRLEEMLDMQ 79

BLAST of Carg17217 vs. ExPASy TrEMBL
Match: A0A6J1IFA5 (uncharacterized protein LOC111476418 OS=Cucurbita maxima OX=3661 GN=LOC111476418 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.6e-27
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 1  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERRKVRF 60
          MVL+LDLQEFILRARVLKLYR ALRT +KAPVHAREELRHTIRQEMENNR C++R+K+RF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKIRF 60

Query: 61 LLSEGIERLKRLEEMLDMQ 80
          LLSEG ERLKRL+EMLDMQ
Sbjct: 61 LLSEGRERLKRLDEMLDMQ 79

BLAST of Carg17217 vs. ExPASy TrEMBL
Match: A0A6J1CHJ1 (uncharacterized protein LOC111011218 OS=Momordica charantia OX=3673 GN=LOC111011218 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.3e-26
Identity = 66/79 (83.54%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 1  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERRKVRF 60
          MV+SLDL EFILRARVLKL+R ALRTA+KAPVHAREELRHTIRQEMENNR CN+++KVR+
Sbjct: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60

Query: 61 LLSEGIERLKRLEEMLDMQ 80
          L+SEGIE LKRL+EMLDMQ
Sbjct: 61 LISEGIESLKRLDEMLDMQ 79

BLAST of Carg17217 vs. TAIR 10
Match: AT1G76065.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 105.1 bits (261), Expect = 2.6e-23
Identity = 52/78 (66.67%), Postives = 67/78 (85.90%), Query Frame = 0

Query: 2  VLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERRKVRFL 61
          ++ LDLQ FILRARVLKLYR AL+ A +APVH R EL+ T+RQEME NR CN+++K+R+L
Sbjct: 1  MVQLDLQSFILRARVLKLYRQALKIAHRAPVHVRGELKQTVRQEMEKNRDCNDKQKIRYL 60

Query: 62 LSEGIERLKRLEEMLDMQ 80
          +SEG+ER+K L+EMLDMQ
Sbjct: 61 ISEGLERIKGLDEMLDMQ 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6608613.14.8e-32100.00hypothetical protein SDJN03_01955, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7037930.14.8e-32100.00hypothetical protein SDJN02_01562, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022941069.11.4e-3198.73uncharacterized protein LOC111446466 [Cucurbita moschata][more]
XP_023524988.14.5e-3096.20uncharacterized protein LOC111788747 [Cucurbita pepo subsp. pepo] >XP_023524989.... [more]
XP_022936861.14.2e-2889.87uncharacterized protein LOC111443321 [Cucurbita moschata] >XP_022936862.1 unchar... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FM546.8e-3298.73uncharacterized protein LOC111446466 OS=Cucurbita moschata OX=3662 GN=LOC1114464... [more]
A0A6J1F8N32.0e-2889.87uncharacterized protein LOC111443321 OS=Cucurbita moschata OX=3662 GN=LOC1114433... [more]
A0A6J1IY122.0e-2893.67uncharacterized protein LOC111480962 OS=Cucurbita maxima OX=3661 GN=LOC111480962... [more]
A0A6J1IFA58.6e-2786.08uncharacterized protein LOC111476418 OS=Cucurbita maxima OX=3661 GN=LOC111476418... [more]
A0A6J1CHJ14.3e-2683.54uncharacterized protein LOC111011218 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
Match NameE-valueIdentityDescription
AT1G76065.12.6e-2366.67LYR family of Fe/S cluster biogenesis protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 66..79
NoneNo IPR availablePANTHERPTHR13675LYR MOTIF-CONTAINING PROTEIN 2coord: 1..79
NoneNo IPR availablePANTHERPTHR13675:SF0LYR MOTIF-CONTAINING PROTEIN 2coord: 1..79
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 15..70
e-value: 1.2E-14
score: 54.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17217-RACarg17217-RAmRNA