Carg17203 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17203
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	BRCA1-A complex subunit BRE
Location	Carg_Chr01: 12952836 .. 12954677 (-)
RNA-Seq Expression	Carg17203
Synteny	Carg17203

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTGTTCATTGCTGTTTCAGCTGACTGGCTCTCCAGATCGATTGCCGGCGATAAACCGAGTAATTTTATTGTTTAGCTTAGCTGCTAAGGCCATGTCTTCCGATACTGTACCTCCTCTCATTGCTGCTCAAATCAATTACCTGCGCAATCACTTTCCTCTCCCCTTAATGGTAAACAATTCCGCTTACTATCTCTTCCTTGAAAATTCAGGGATAACAAAATCAAATGGCGATTTCTAGTTTATTACATCGATCGGAAATGGATGATATTCGGAGTTCTTTCTTTCTTTTTTCCCTCCATTTTCCCACCCCGATGATAGTATTTACTGTCGCTATAATATGGCGATAGAAAGCGAACGGTTTGTTGAACAGATCACTTATTCTTACTGTTTTGATATTCAGATTGAGAACATGTGGTCTGGCAGTAGACACTACCCTGGAATTATCGATAGGTTCACCTTAGTCATACCTTACTGCCTTGAATTCGTCAAATGTAAGACCTGTTTTCCATTGTTGTTATCATAATATCCTTTCAATTCTTTTCTCTTTCCCTGTAAATGGTTGACAGATTGTTTGATAGCTGTTACCTGTCGTAGGGGACATCATGTACGATGCTGAATCGCCATTTTCTGCACCTGATATTATGTTTGGACCAGAAGATGAAAATTTCCATCCTTTCACAAGTAAGGTTGATGAAGGAGAGGGATATCATGATTCCTTACAAAATAGTTTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGGTTCTTCAGGGTTTTCCTTTGATTGAGCCTTCTTCTGTTTCTAATGTTTTGGGTATAATTCAGCTTGAATTCAAAGGCAACTTTACTTTTTTTTAAGGGATCGATATGCATCATACCAAAGGAAACGGGTTGAAGGAGTTGAGGATGAAAGATTGAAGTTTGAACTCTGTACGATGTTATCTAGGGAGGTAACGTTCTTCATTATAGTGTTTATTACACTGTCCTAACTCTGTTTTGATAATCAATTGCATGAGTTTAGGAATTTAAGGGATCGGGTATTGGACTTGGTTTCTTGATAATACATTCTTGCTGGATGCCTGTAGAAATGTATAAAACTTTATAATTTAGTTTTCATGCTTGGAAATTGAATGAGAGAACTGCTGCTAGTTAATTATTCCAGATTTTTCATGCTTGAATTATAGTAGTGTAGAAGTTAAACCATCCCTATAATGTTTTCTTTTTAAATTTTTTTTTTTTTTTGCTTATAACCATGTATTCCTTTAGTTGGGCAAGCTGCTCCTTATACAGATATCTGTGTTCTCTCCTTAAGGTTCTTTTATTTTCAATGGTAACTTAACCAAAACTACCTTTCTGCAGGGAATTGAAATGCATTTGAGTTCAGGTGTTGAGAAGGTAGTATTTTAAAGTTTGTGGTTGTACTTTCCTTGAATAGTAAAGAATTGATACTGAGAATTCTATTCTCTCTCTTTATTCTCATATGTGTGGCTTCTATGCCTTTGAATTTTAGCATAGCCAGAGGATGTCAAATTTGCAGTGCCACTAGTAGACATTAATATTAATAAGATGATACCTGGATGCCCATGGAGGCACCCACAGAAGATATTTTTGCAGGTTTCCTTTCTGAACTTCTGGTTTTCCTGTTCCTCTATTATTTCCCATTCTCATCATTGTTTATAGGTTTTATATCCTGTGGTGAGAAAATATGCGTCTACTCCTGCTGCACCTCGTCTGAAATTGGTCTCCACGTCTGAGTTGAAGGCTCTGTTATCCATCGAGGACATCAAACTTCCTTCATGGATAGATGGAATGTAG

mRNA sequence

AGGTGTTCATTGCTGTTTCAGCTGACTGGCTCTCCAGATCGATTGCCGGCGATAAACCGAGTAATTTTATTGTTTAGCTTAGCTGCTAAGGCCATGTCTTCCGATACTGTACCTCCTCTCATTGCTGCTCAAATCAATTACCTGCGCAATCACTTTCCTCTCCCCTTAATGATTGAGAACATGTGGTCTGGCAGTAGACACTACCCTGGAATTATCGATAGGTTCACCTTAGTCATACCTTACTGCCTTGAATTCGTCAAATGGGACATCATGTACGATGCTGAATCGCCATTTTCTGCACCTGATATTATGTTTGGACCAGAAGATGAAAATTTCCATCCTTTCACAAGTAAGGTTGATGAAGGAGAGGGATATCATGATTCCTTACAAAATAGTTTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGGGATCGATATGCATCATACCAAAGGAAACGGGTTGAAGGAGTTGAGGATGAAAGATTGAAGTTTGAACTCTGTACGATGTTATCTAGGGAGGGAATTGAAATGCATTTGAGTTCAGGTGTTGAGAAGCCAGAGGATGTCAAATTTGCAGTGCCACTAGTAGACATTAATATTAATAAGATGATACCTGGATGCCCATGGAGGCACCCACAGAAGATATTTTTGCAGGTTTTATATCCTGTGGTGAGAAAATATGCGTCTACTCCTGCTGCACCTCGTCTGAAATTGGTCTCCACGTCTGAGTTGAAGGCTCTGTTATCCATCGAGGACATCAAACTTCCTTCATGGATAGATGGAATGTAG

Coding sequence (CDS)

ATGTCTTCCGATACTGTACCTCCTCTCATTGCTGCTCAAATCAATTACCTGCGCAATCACTTTCCTCTCCCCTTAATGATTGAGAACATGTGGTCTGGCAGTAGACACTACCCTGGAATTATCGATAGGTTCACCTTAGTCATACCTTACTGCCTTGAATTCGTCAAATGGGACATCATGTACGATGCTGAATCGCCATTTTCTGCACCTGATATTATGTTTGGACCAGAAGATGAAAATTTCCATCCTTTCACAAGTAAGGTTGATGAAGGAGAGGGATATCATGATTCCTTACAAAATAGTTTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGGGATCGATATGCATCATACCAAAGGAAACGGGTTGAAGGAGTTGAGGATGAAAGATTGAAGTTTGAACTCTGTACGATGTTATCTAGGGAGGGAATTGAAATGCATTTGAGTTCAGGTGTTGAGAAGCCAGAGGATGTCAAATTTGCAGTGCCACTAGTAGACATTAATATTAATAAGATGATACCTGGATGCCCATGGAGGCACCCACAGAAGATATTTTTGCAGGTTTTATATCCTGTGGTGAGAAAATATGCGTCTACTCCTGCTGCACCTCGTCTGAAATTGGTCTCCACGTCTGAGTTGAAGGCTCTGTTATCCATCGAGGACATCAAACTTCCTTCATGGATAGATGGAATGTAG

Protein sequence

MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININKMIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM

Homology

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BLAST of Carg17203 vs. NCBI nr
Match: XP_022940533.1 (BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 496.5 bits (1277), Expect = 1.3e-136
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK
Sbjct: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203 vs. NCBI nr
Match: KAG7037917.1 (BRISC and BRCA1-A complex member 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 496.5 bits (1277), Expect = 1.3e-136
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK
Sbjct: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203 vs. NCBI nr
Match: KAG6608599.1 (BRISC and BRCA1-A complex member 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 495.4 bits (1274), Expect = 2.9e-136
Identity = 239/240 (99.58%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHL+SGVEKPEDVKFAVPLVDININK
Sbjct: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLNSGVEKPEDVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203 vs. NCBI nr
Match: XP_022981789.1 (BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 495.0 bits (1273), Expect = 3.7e-136
Identity = 239/240 (99.58%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YDAESPFSAPDI+FGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIVFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK
Sbjct: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203 vs. NCBI nr
Match: XP_023525358.1 (BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 495.0 bits (1273), Expect = 3.7e-136
Identity = 239/240 (99.58%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPE+VKFAVPLVDININK
Sbjct: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEEVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203 vs. ExPASy Swiss-Prot
Match: Q6GPL9 (BRISC and BRCA1-A complex member 2 OS=Xenopus laevis OX=8355 GN=babam2 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.3e-10
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 42  DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 101
           DRF L IPY  E +KWDI+++A  P   PD +FG ED  F P  S +           ++
Sbjct: 54  DRFKLHIPYAGETLKWDIIFNASYPELPPDFIFG-EDAEFLPDPSAL-----------HN 113

Query: 102 LRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLS--REGIEMHLSS 161
           L +WN  DP  L  +++EL  +Y  YQ  R+   E  RL FE  T+    + G+ M + +
Sbjct: 114 LSEWNPSDPECLLLVVKELVQQYHQYQCSRLS--ESSRLMFEYQTLQEEPQYGLNMEIYA 160

[Close]

BLAST of Carg17203 vs. ExPASy Swiss-Prot
Match: B6NXD5 (BRISC and BRCA1-A complex member 2 OS=Branchiostoma floridae OX=7739 GN=BABAM2 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.6e-10
Identity = 35/121 (28.93%), Postives = 65/121 (53.72%), Query Frame = 0


Query: 42  DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 101
           DRF + IP+  + +KW++++D+  P + PD +F  E+ NF P   K++           +
Sbjct: 56  DRFKIYIPFAGDSLKWEVIFDSCQPSNPPDFIFLGENGNFDPDIEKLE-----------N 115

Query: 102 LRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLSREG---IEMHLS 160
           L  W+ K+P  L   +++L   Y  YQ++ +EG    RL+FE  ++   E    +E+H+ 
Sbjct: 116 LTHWDPKNPESLVLAIEDLMREYRCYQKQLIEGY--SRLQFEYSSLQGMEACDDVEVHMG 163

[Close]

BLAST of Carg17203 vs. ExPASy Swiss-Prot
Match: Q6SP92 (BRISC and BRCA1-A complex member 2 OS=Mesocricetus auratus OX=10036 GN=Babam2 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.3e-10
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 42  DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 101
           DRF L IPY  E +KWDI+++A+ P   PD +FG ED  F P  S +           ++
Sbjct: 54  DRFKLHIPYAGESLKWDIIFNAQYPELPPDFIFG-EDAEFLPDPSAL-----------HN 113

Query: 102 LRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLS--REGIEMHLSS 161
           L  WN  DP  L  +++EL  +Y  +Q  R+   E  RL FE  T+L   + G  M + +
Sbjct: 114 LASWNPSDPECLLLVVKELVQQYHQFQCSRLR--ESSRLMFEYQTLLEEPQYGENMEIYA 160

[Close]

BLAST of Carg17203 vs. ExPASy Swiss-Prot
Match: Q9NXR7 (BRISC and BRCA1-A complex member 2 OS=Homo sapiens OX=9606 GN=BABAM2 PE=1 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-09
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 42  DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 101
           DRF L IPY  E +KWDI+++A+ P   PD +FG ED  F P  S          +LQN 
Sbjct: 54  DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLPDPS----------ALQN- 113

Query: 102 LRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLS--REGIEMHLSS 161
           L  WN  +P  L  +++EL  +Y  +Q  R+   E  RL FE  T+L   + G  M + +
Sbjct: 114 LASWNPSNPECLLLVVKELVQQYHQFQCSRLR--ESSRLMFEYQTLLEEPQYGENMEIYA 160

[Close]

BLAST of Carg17203 vs. ExPASy Swiss-Prot
Match: Q8WN70 (BRISC and BRCA1-A complex member 2 OS=Saguinus oedipus OX=9490 GN=BABAM2 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-09
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 42  DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 101
           DRF L IPY  E +KWDI+++A+ P   PD +FG ED  F P  S          +LQN 
Sbjct: 54  DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLPDPS----------ALQN- 113

Query: 102 LRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLS--REGIEMHLSS 161
           L  WN  +P  L  +++EL  +Y  +Q  R+   E  RL FE  T+L   + G  M + +
Sbjct: 114 LASWNPSNPECLLLVVKELVQQYHQFQCSRLR--ESSRLMFEYQTLLEEPQYGENMEIYA 160

[Close]

BLAST of Carg17203 vs. ExPASy TrEMBL
Match: A0A6J1FPK2 (BRCA1-A complex subunit BRE OS=Cucurbita moschata OX=3662 GN=LOC111446103 PE=4 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 6.2e-137
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK
Sbjct: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203 vs. ExPASy TrEMBL
Match: A0A6J1J2U1 (BRCA1-A complex subunit BRE OS=Cucurbita maxima OX=3661 GN=LOC111480831 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 1.8e-136
Identity = 239/240 (99.58%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YDAESPFSAPDI+FGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIVFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK
Sbjct: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203 vs. ExPASy TrEMBL
Match: A0A5D3E738 (BRCA1-A complex subunit BRE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008020 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 4.0e-128
Identity = 223/240 (92.92%), Postives = 235/240 (97.92%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MS+DTVPPLIAA INYL NHFPLP+ IE+MWSGSRHYPGI+DRFTLV+PYCLEFVKWDIM
Sbjct: 1   MSADTVPPLIAAHINYLLNHFPLPVKIEHMWSGSRHYPGIMDRFTLVMPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           Y+AESPFSAPDIMFGPEDENFHPF+SKVDEGEG H+SLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YNAESPFSAPDIMFGPEDENFHPFSSKVDEGEGDHNSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRY SYQRKRVEGV+DERLKFELCTMLSREGIEMHLSSGVEKPE+VKFAVPLVDININK
Sbjct: 121 RDRYVSYQRKRVEGVDDERLKFELCTMLSREGIEMHLSSGVEKPEEVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYA+TP+APRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYATTPSAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203 vs. ExPASy TrEMBL
Match: A0A1S3CSN0 (BRCA1-A complex subunit BRE OS=Cucumis melo OX=3656 GN=LOC103503876 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 4.0e-128
Identity = 223/240 (92.92%), Postives = 235/240 (97.92%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MS+DTVPPLIAA INYL NHFPLP+ IE+MWSGSRHYPGI+DRFTLV+PYCLEFVKWDIM
Sbjct: 1   MSADTVPPLIAAHINYLLNHFPLPVKIEHMWSGSRHYPGIMDRFTLVMPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           Y+AESPFSAPDIMFGPEDENFHPF+SKVDEGEG H+SLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YNAESPFSAPDIMFGPEDENFHPFSSKVDEGEGDHNSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRY SYQRKRVEGV+DERLKFELCTMLSREGIEMHLSSGVEKPE+VKFAVPLVDININK
Sbjct: 121 RDRYVSYQRKRVEGVDDERLKFELCTMLSREGIEMHLSSGVEKPEEVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYA+TP+APRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYATTPSAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203 vs. ExPASy TrEMBL
Match: A0A5A7VCG0 (BRCA1-A complex subunit BRE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001120 PE=4 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 1.2e-127
Identity = 223/240 (92.92%), Postives = 234/240 (97.50%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MS+DTVPPLIAA INYL NHFPLP+ IE+MWSGSRHYPGI DRFTLV+PYCLEFVKWDIM
Sbjct: 1   MSADTVPPLIAAHINYLLNHFPLPVKIEHMWSGSRHYPGIKDRFTLVMPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           Y+AESPFSAPDIMFGPEDENFHPF+SKVDEGEG H+SLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YNAESPFSAPDIMFGPEDENFHPFSSKVDEGEGDHNSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRY SYQRKRVEGV+DERLKFELCTMLSREGIEMHLSSGVEKPE+VKFAVPLVDININK
Sbjct: 121 RDRYVSYQRKRVEGVDDERLKFELCTMLSREGIEMHLSSGVEKPEEVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYA+TP+APRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYATTPSAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203 vs. TAIR 10
Match: AT5G42470.1 (CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (InterPro:IPR010358); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 287.3 bits (734), Expect = 1.1e-77
Identity = 133/242 (54.96%), Postives = 188/242 (77.69%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           M+ +  PPLIA Q++YL NH P  + I N+WSG++  P I+DRFTLVIPYCLE +KWD++
Sbjct: 1   MAFEEFPPLIADQLHYLLNHSPDSIKIANVWSGNKINPKILDRFTLVIPYCLETIKWDVI 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPF-TSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQE 120
           Y++E     PD +FGP+DE+F P   S +   +    SL+ +L +W+ +D +RL  ++Q 
Sbjct: 61  YNSEYAMDPPDFVFGPDDEDFVPCKCSAIAPDDDQISSLEKALSEWDHEDSTRLLVIIQG 120

Query: 121 LRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLV-DINI 180
           LRD+Y +YQR+RV  V+D+R+KFE+ T+L+R+GIEM ++SGV+KPE+VKFAVPLV D+NI
Sbjct: 121 LRDQYVAYQRRRVGQVDDDRVKFEISTVLTRKGIEMQMASGVDKPEEVKFAVPLVMDMNI 180

Query: 181 NKMIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWID 240
           NKM+ GCPW+H QKI+LQV+YP++RKY + P+APRLKLVS  +LK+L S+ED+KL  W+D
Sbjct: 181 NKMVVGCPWKHQQKIYLQVVYPILRKYEAAPSAPRLKLVSYYDLKSLFSVEDVKLSPWMD 240

The following BLAST results are available for this feature:

BLAST of Carg17203 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940533.1	1.3e-136	100.00	BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita moschata]	[more]
KAG7037917.1	1.3e-136	100.00	BRISC and BRCA1-A complex member 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6608599.1	2.9e-136	99.58	BRISC and BRCA1-A complex member 2, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022981789.1	3.7e-136	99.58	BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita maxima]	[more]
XP_023525358.1	3.7e-136	99.58	BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg17203 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6GPL9	3.3e-10	36.36	BRISC and BRCA1-A complex member 2 OS=Xenopus laevis OX=8355 GN=babam2 PE=2 SV=1	[more]
B6NXD5	5.6e-10	28.93	BRISC and BRCA1-A complex member 2 OS=Branchiostoma floridae OX=7739 GN=BABAM2 P...	[more]
Q6SP92	7.3e-10	36.36	BRISC and BRCA1-A complex member 2 OS=Mesocricetus auratus OX=10036 GN=Babam2 PE...	[more]
Q9NXR7	1.6e-09	38.02	BRISC and BRCA1-A complex member 2 OS=Homo sapiens OX=9606 GN=BABAM2 PE=1 SV=2	[more]
Q8WN70	1.6e-09	38.02	BRISC and BRCA1-A complex member 2 OS=Saguinus oedipus OX=9490 GN=BABAM2 PE=2 SV...	[more]

BLAST of Carg17203 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FPK2	6.2e-137	100.00	BRCA1-A complex subunit BRE OS=Cucurbita moschata OX=3662 GN=LOC111446103 PE=4 S...	[more]
A0A6J1J2U1	1.8e-136	99.58	BRCA1-A complex subunit BRE OS=Cucurbita maxima OX=3661 GN=LOC111480831 PE=4 SV=...	[more]
A0A5D3E738	4.0e-128	92.92	BRCA1-A complex subunit BRE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3CSN0	4.0e-128	92.92	BRCA1-A complex subunit BRE OS=Cucumis melo OX=3656 GN=LOC103503876 PE=4 SV=1	[more]
A0A5A7VCG0	1.2e-127	92.92	BRCA1-A complex subunit BRE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Carg17203 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42470.1	1.1e-77	54.96	CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (InterPro...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010358	BRCA1-A complex subunit BRE	PFAM	PF06113	BRE	coord: 27..173 e-value: 1.5E-19 score: 70.0
IPR010358	BRCA1-A complex subunit BRE	PANTHER	PTHR15189	BRISC AND BRCA1-A COMPLEX MEMBER 2	coord: 2..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17203-RA	Carg17203-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006302	double-strand break repair
cellular_component	GO:0070531	BRCA1-A complex
cellular_component	GO:0070552	BRISC complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane