Carg17185 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17185
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionATP synthase subunit e, mitochondrial
LocationCarg_Chr01: 12878902 .. 12880711 (+)
RNA-Seq ExpressionCarg17185
SyntenyCarg17185
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCATTAATTTGAGCTCGATATTCGGGTACACGTCAGCCTTGACAGGTGCTACGGATCCGAAATTGCAGAGGAAATTAGGGTTTTTTATGATCCAGGTGGGAAAGGGGAACTCGTGGCACTCGAAGGAGACGAATCCGAGCATTTCTGCGTTGAGATTGATATCATCATTTACATCTAATGGCGCTCCCTCCTGGCCCTTACTCCGGCACCAGCACTCTCGCACTGGTATATGCCTTTTCTTTTGCCTATAATCATCTGCTTAACTACGTTATTTCATATTTCCGATTTGTATTTACTTCGATCCCTCTCATGTGCTGTATCCACCCTTTTTCTCGAAAGTTTCGGCGATATTTGAATGCATTTAGATTTGTCCGTTTAGAATTCTCTATCGTGTGATAATTGGTGCGAGTGGATATCTGCGATTGAAATTTTTTTTTTTTTTTTTTCTTCGTTGTATTTCTTCATTATCATTTTTAAGTTCTTTCTTGGGAATCAAATGGATCGGTTCATTTTTAGATTCTAAAACTTTTTTTTTTTATGTGCCAATCTTTTTGGGTATTGATTTACACAGGTAGCTCGTGCATCAACATTCACCTTTGGTTTGGTTTACGGAAGCATTAAGCTCAAGGTTCTGAAGGTAAATTGGAATCAACTGTTTTTCCAGCCTTTCCAGTTTGTAAATTCATTGAAATGGTCATTTTTTGTTGTGCATGGGTTTTGATTGTTCGGTGTCTCTGTCTATGAATCAATTCCATGTTTATTGCAAGTTTGTAAATATTATTGTGACCCTTTCACTCGTTCATTCAGATGACTTCAACGTTATCACCAGATTTCATGTAATCTGTTTATTTGATTGTTTTAACTTGTTTTCTTTTGGAGAACAGATTTCTTCGCTGCCATTATTTCCGTCGGCACTTCTAGTTTAAGAAGTCTTGATGGAAATCACGACCCAAATTTGAAAAGAAAAAAAATAAATAATTTCAAGAACATTGGTTGTGTAGTTAGAAACATTTAAGCTATGAGCCATTTTTACTGGATATGAAAGTTTCTTCTTCTGGTTTCGCCAACTACCGTGCCATGTTATTTGTTTTGATTAAGAAAAAAATTAGGCACGTATGCTCATGAATCATAGACCGTCTTATGTCCCTTATTCAGTAGTTATCTGTATAGAATATGAATGCAATTGTCTAAGAACGTATCTTTTGGTTGCATTCTTGTGCACTTGCCAGGCAAAGGCCAAGTCTCATGCGAAAGCTGCAGCCAAAGCCCATCATTGATGAACGCATTTACTAATGTAGCTTGTAGCAATGGAAGAGATGGAAATTACAGCATAGGCAGAGACTCTGATCGTTGATTGGAGAAATGTGATTTTTGGCTTGATATATATTAGATTCTGGTTTTTACTGCTGGAAGAAAATAATATTTTTTTGTTTAAACGTTGATAGTATTGCAAATGCTGCATGGTGCATGTTTAGTTTTTCAGTTCGAATGGCAAATCTGCCAATGAGATGGATGTTCTTGAAATAAAAGTCATACATCATCCTGATATATAGACTCGTTTGAGATTTGGCTATCTCAATATCACTCTACTTTCACTTTCAAGTTTCAACTTATGACTGGTTTTGATCTCTCTTTTCTCAAGGGTCGTGTTCTAAGAAAGGTCAGCAAACATGCTCATAGGTTCTCGAAAACAGAAATTTGGCTAGGGAGAAACTAGAATGTGGCTGGCTTATGTTCAATTCCTAATCTAACATAAAGTTGAGCATGGATCATAATTAAACTAGGAGTTCAAGCTTGGAAACTAGGCA

mRNA sequence

CTCCATTAATTTGAGCTCGATATTCGGGTACACGTCAGCCTTGACAGGTGCTACGGATCCGAAATTGCAGAGGAAATTAGGGTTTTTTATGATCCAGGTGGGAAAGGGGAACTCGTGGCACTCGAAGGAGACGAATCCGAGCATTTCTGCGTTGAGATTGATATCATCATTTACATCTAATGGCGCTCCCTCCTGGCCCTTACTCCGGCACCAGCACTCTCGCACTGGTAGCTCGTGCATCAACATTCACCTTTGGTTTGGTTTACGGAAGCATTAAGCTCAAGGTTCTGAAGGCAAAGGCCAAGTCTCATGCGAAAGCTGCAGCCAAAGCCCATCATTGATGAACGCATTTACTAATGTAGCTTGTAGCAATGGAAGAGATGGAAATTACAGCATAGGCAGAGACTCTGATCGTTGATTGGAGAAATGTGATTTTTGGCTTGATATATATTAGATTCTGGTTTTTACTGCTGGAAGAAAATAATATTTTTTTGTTTAAACGTTGATAGTATTGCAAATGCTGCATGGTGCATGTTTAGTTTTTCAGTTCGAATGGCAAATCTGCCAATGAGATGGATGTTCTTGAAATAAAAGTCATACATCATCCTGATATATAGACTCGTTTGAGATTTGGCTATCTCAATATCACTCTACTTTCACTTTCAAGTTTCAACTTATGACTGGTTTTGATCTCTCTTTTCTCAAGGGTCGTGTTCTAAGAAAGGTCAGCAAACATGCTCATAGGTTCTCGAAAACAGAAATTTGGCTAGGGAGAAACTAGAATGTGGCTGGCTTATGTTCAATTCCTAATCTAACATAAAGTTGAGCATGGATCATAATTAAACTAGGAGTTCAAGCTTGGAAACTAGGCA

Coding sequence (CDS)

ATGGCGCTCCCTCCTGGCCCTTACTCCGGCACCAGCACTCTCGCACTGGTAGCTCGTGCATCAACATTCACCTTTGGTTTGGTTTACGGAAGCATTAAGCTCAAGGTTCTGAAGGCAAAGGCCAAGTCTCATGCGAAAGCTGCAGCCAAAGCCCATCATTGA

Protein sequence

MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAKAKSHAKAAAKAHH
Homology
[Close]
BLAST of Carg17185 vs. NCBI nr
Match: KAG7037899.1 (hypothetical protein SDJN02_01530 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.5 bits (249), Expect = 4.5e-18
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAKAKSHAKAAAKAHH 54
          MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAKAKSHAKAAAKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAKAKSHAKAAAKAHH 53

[Close]
BLAST of Carg17185 vs. NCBI nr
Match: XP_038898502.1 (uncharacterized protein LOC120086120 [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 2.5e-16
Identity = 50/53 (94.34%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAKAKSHAKAAAKAHH 54
          MA PPGPYSGTSTLALVARAS FTFGLVYGSIKLKVLKAKAKSHAKA AKAHH
Sbjct: 1  MATPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH 53

[Close]
BLAST of Carg17185 vs. NCBI nr
Match: XP_022974819.1 (uncharacterized protein LOC111473599 [Cucurbita maxima])

HSP 1 Score: 94.0 bits (232), Expect = 4.2e-16
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAKAKSHAKAAAKAHH 54
          MALPPGPYSGTSTLALVARAS FTFGLVYG+IKLKVLKAKAKSHAKA AK HH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKTHH 53

[Close]
BLAST of Carg17185 vs. NCBI nr
Match: XP_022132454.1 (uncharacterized protein LOC111005275 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 9.4e-16
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAKAKSHAKAAAKAHH 54
          MA PPGPYSGTSTLALVARAS FTFG+VYGSIKLKVLKAKAKSHAKA AKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLKAKAKSHAKAEAKAHH 53

[Close]
BLAST of Carg17185 vs. NCBI nr
Match: XP_022936650.1 (uncharacterized protein LOC111443182 [Cucurbita moschata] >XP_023536066.1 uncharacterized protein LOC111797320 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAKAKSHAKAAAKAHH 54
          MALPPGPYSGTSTLALVARAS FTFGLVYG+IKLKVLKAKAKS AKA AKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSRAKAEAKAHH 53

[Close]
BLAST of Carg17185 vs. ExPASy TrEMBL
Match: A0A6J1IIN9 (uncharacterized protein LOC111473599 OS=Cucurbita maxima OX=3661 GN=LOC111473599 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAKAKSHAKAAAKAHH 54
          MALPPGPYSGTSTLALVARAS FTFGLVYG+IKLKVLKAKAKSHAKA AK HH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKTHH 53

[Close]
BLAST of Carg17185 vs. ExPASy TrEMBL
Match: A0A6J1BT37 (ATP synthase subunit e, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005275 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.6e-16
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAKAKSHAKAAAKAHH 54
          MA PPGPYSGTSTLALVARAS FTFG+VYGSIKLKVLKAKAKSHAKA AKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLKAKAKSHAKAEAKAHH 53

[Close]
BLAST of Carg17185 vs. ExPASy TrEMBL
Match: A0A6J1FEB4 (uncharacterized protein LOC111443182 OS=Cucurbita moschata OX=3662 GN=LOC111443182 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.0e-16
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAKAKSHAKAAAKAHH 54
          MALPPGPYSGTSTLALVARAS FTFGLVYG+IKLKVLKAKAKS AKA AKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSRAKAEAKAHH 53

[Close]
BLAST of Carg17185 vs. ExPASy TrEMBL
Match: A0A1S3CRK7 (uncharacterized protein LOC103503894 OS=Cucumis melo OX=3656 GN=LOC103503894 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.9e-15
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAKAKSHAKAAAKAHH 54
          MA PPGPYSGTSTLALVARAS FTFGLVYG+IKLKVLKAKAKS AKA AKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSRAKAEAKAHH 53

[Close]
BLAST of Carg17185 vs. ExPASy TrEMBL
Match: A0A0A0LH44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866500 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.0e-15
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAKAKSHAKAAAKAHH 54
          MA PPGPYSGTSTLALVARAS F+FGLVYGSIKLKVLKAKAKS AKA AKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 53

[Close]
BLAST of Carg17185 vs. TAIR 10
Match: AT3G01130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-13
Identity = 39/53 (73.58%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAKAKSHAKAAAKAHH 54
          MA PPG YSGTSTLALVARAS F  GL+YG+IKLK LK K  S  KA AKAHH
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKIKKNSQIKAEAKAHH 53

[Close]
BLAST of Carg17185 vs. TAIR 10
Match: AT5G15320.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-12
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAKAKSHAKAAAKAHH 54
          M LPPG YSGTS+LALVARAS F  GLVYG++KLKVLK K+ S  K  A AHH
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKVLKIKSMSQKKVEATAHH 53

[Close]
BLAST of Carg17185 vs. TAIR 10
Match: AT5G15320.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 8.2e-10
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAKAKSHAKAAAKAHH 54
          M LPPG YSGTS+LALVARAS F  GLVYG++KLK+   K+ S  K  A AHH
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKI---KSMSQKKVEATAHH 50

[Close]
BLAST of Carg17185 vs. TAIR 10
Match: AT3G01130.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-09
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 1  MALPPGPYSGTSTLALVARASTFTFGLVYGSIKLKVLKAK 41
          MA PPG YSGTSTLALVARAS F  GL+YG+IKLK LK K
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKHK 40

The following BLAST results are available for this feature:
BLAST of Carg17185 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037899.14.5e-18100.00hypothetical protein SDJN02_01530 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038898502.12.5e-1694.34uncharacterized protein LOC120086120 [Benincasa hispida][more]
XP_022974819.14.2e-1692.45uncharacterized protein LOC111473599 [Cucurbita maxima][more]
XP_022132454.19.4e-1692.45uncharacterized protein LOC111005275 [Momordica charantia][more]
XP_022936650.11.2e-1592.45uncharacterized protein LOC111443182 [Cucurbita moschata] >XP_023536066.1 unchar... [more]
BLAST of Carg17185 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17185 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IIN92.0e-1692.45uncharacterized protein LOC111473599 OS=Cucurbita maxima OX=3661 GN=LOC111473599... [more]
A0A6J1BT374.6e-1692.45ATP synthase subunit e, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11100... [more]
A0A6J1FEB46.0e-1692.45uncharacterized protein LOC111443182 OS=Cucurbita moschata OX=3662 GN=LOC1114431... [more]
A0A1S3CRK73.9e-1590.57uncharacterized protein LOC103503894 OS=Cucumis melo OX=3656 GN=LOC103503894 PE=... [more]
A0A0A0LH445.0e-1590.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866500 PE=4 SV=1[more]
BLAST of Carg17185 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G01130.12.7e-1373.58unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G15320.12.3e-1269.81unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G15320.28.2e-1064.15unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G01130.21.4e-0977.50unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36028OSJNBB0050O03.8 PROTEINcoord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17185-RACarg17185-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function GO:0015078 proton transmembrane transporter activity