Carg17128 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17128
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSAP30_Sin3_bdg domain-containing protein
LocationCarg_Chr01: 12590808 .. 12592056 (-)
RNA-Seq ExpressionCarg17128
SyntenyCarg17128
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATAAGAGAAATCGCAAGCAGTATAAATATATCTCATCGAAGCCCCACTACTGGTATGACGAGTGTTCTACCGACTTGATTGATCTCAGAATTTTCGAAAAACTTATGCAGATATGAATGGATCGGATATTTCGTCTGAGTTTAGAATTATTGGTTCAATGATGACTCATCAAGCATTTAACTGGATTAAGTCTGTAAAAACAATTATTGACTGTCGATTCGCCAACTTTCTCGCAGAGGTTGGATCGGTTAATATCGATGTACCTGGATCTCAGATTGACATAGAATTTTGCTTGTACTAATCTGATAGCTATTAGATTCTGCTTGCACTTGCCGTTAGATTATTCTTATTAGGGTGAGTTGGTACATTCGAATACAACTTGCTTCGTGTTTCGGAGTGATGTTTCATTGGCGCCACTGTTCCTAAGTTGTGTGGATGAATGATATGCTTTTTAGGAACAGTGGTTGAGCTTGGTACTCTTTGGATTCTTTGCTCATTCAACTTTTACTTTCTTCTAAACCTTGTTGTGGCATTTATTCTCTCTTCTGGACCCTCCTCATCCTTTTTTCATAATGCTTTTGGTATTTTCATTTCCCAGCATCTGATGATACTTTGAAGTCCCATAGACTGAGATATAGGACACACAAATCGTCGGGATCATCACACAAAACTATCAGCCGATCCTTCTCGTATGAATCTCAGTCCAAGGGGTCTATTTCGACCCCTCGTGGGTCCATGGTACTTGAGAAACAGACACTCTTTTGTTTCATTTGTTGAAGTGAGATATAATTAGGCTCATAATCTAATAAGTTGGATCTTTCTTAACGTTCTTGTACAGAAGGTTGACCTCGGTAAACTGGAAATGTCTGCTCTATGGAGATATTGGCGACACTTCAATCTCGTAAGTTACCGTTTATTCGATAAATGTGATCATATTTTGGGCACATGCCCATTAAACTGCAAGATTTTACCATCATGATTGAGAGAACTCTATATCGTCTAGGTCGATGCTTTTCCTAACCCATCGAAAGAGCAGTTGGTGGATGTCGTTCAAAGGCATTTCATGTCACAGGTAATATCAATTTTCTCGGTTTAACCGTTCGAAAAATACATCAGCTATGTTGTAAACTACATGACATGACTTGTTTGTTTGTTCACTTCACTCGTGCAGCAATTAGACGAGTTGCAGGTGATTGTCGGGTTCGTCCATGCTGCAAAGAGACTCAAAACCGTTTGCAAATGA

mRNA sequence

ATGGAAATAAGAGAAATCGCAAGCAGTATAAATATATCTCATCGAAGCCCCACTACTGCATCTGATGATACTTTGAAGTCCCATAGACTGAGATATAGGACACACAAATCGTCGGGATCATCACACAAAACTATCAGCCGATCCTTCTCGTATGAATCTCAGTCCAAGGGGTCTATTTCGACCCCTCGTGGGTCCATGAAGGTTGACCTCGGTAAACTGGAAATGTCTGCTCTATGGAGATATTGGCGACACTTCAATCTCGTCGATGCTTTTCCTAACCCATCGAAAGAGCAGTTGGTGGATGTCGTTCAAAGGCATTTCATGTCACAGCAATTAGACGAGTTGCAGGTGATTGTCGGGTTCGTCCATGCTGCAAAGAGACTCAAAACCGTTTGCAAATGA

Coding sequence (CDS)

ATGGAAATAAGAGAAATCGCAAGCAGTATAAATATATCTCATCGAAGCCCCACTACTGCATCTGATGATACTTTGAAGTCCCATAGACTGAGATATAGGACACACAAATCGTCGGGATCATCACACAAAACTATCAGCCGATCCTTCTCGTATGAATCTCAGTCCAAGGGGTCTATTTCGACCCCTCGTGGGTCCATGAAGGTTGACCTCGGTAAACTGGAAATGTCTGCTCTATGGAGATATTGGCGACACTTCAATCTCGTCGATGCTTTTCCTAACCCATCGAAAGAGCAGTTGGTGGATGTCGTTCAAAGGCATTTCATGTCACAGCAATTAGACGAGTTGCAGGTGATTGTCGGGTTCGTCCATGCTGCAAAGAGACTCAAAACCGTTTGCAAATGA

Protein sequence

MEIREIASSINISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK
Homology
[Close]
BLAST of Carg17128 vs. NCBI nr
Match: KAG7037842.1 (hypothetical protein SDJN02_01473, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.4 bits (664), Expect = 8.6e-66
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MEIREIASSINISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSIS 60
           MEIREIASSINISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSIS
Sbjct: 1   MEIREIASSINISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSIS 60

Query: 61  TPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVG 120
           TPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVG
Sbjct: 61  TPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVG 120

Query: 121 FVHAAKRLKTVCK 134
           FVHAAKRLKTVCK
Sbjct: 121 FVHAAKRLKTVCK 133

[Close]
BLAST of Carg17128 vs. NCBI nr
Match: XP_022939981.1 (uncharacterized protein LOC111445752 isoform X1 [Cucurbita moschata] >XP_023523278.1 uncharacterized protein LOC111787523 isoform X2 [Cucurbita pepo subsp. pepo] >KAG6608519.1 hypothetical protein SDJN03_01861, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 226.5 bits (576), Expect = 1.4e-55
Identity = 115/123 (93.50%), Postives = 116/123 (94.31%), Query Frame = 0 

Query: 11  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 70
           N+       ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL
Sbjct: 101 NLQWNGSDMASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 160

Query: 71  GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 130
           GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT
Sbjct: 161 GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 220

Query: 131 VCK 134
           VCK
Sbjct: 221 VCK 223

[Close]
BLAST of Carg17128 vs. NCBI nr
Match: XP_022982128.1 (uncharacterized protein LOC111481057 isoform X2 [Cucurbita maxima])

HSP 1 Score: 226.1 bits (575), Expect = 1.8e-55
Identity = 115/123 (93.50%), Postives = 116/123 (94.31%), Query Frame = 0 

Query: 11  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 70
           N+       ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL
Sbjct: 101 NMQWNGSDMASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 160

Query: 71  GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 130
           GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT
Sbjct: 161 GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 220

Query: 131 VCK 134
           VCK
Sbjct: 221 VCK 223

[Close]
BLAST of Carg17128 vs. NCBI nr
Match: XP_038903295.1 (uncharacterized protein LOC120089924 [Benincasa hispida])

HSP 1 Score: 221.1 bits (562), Expect = 5.8e-54
Identity = 114/123 (92.68%), Postives = 114/123 (92.68%), Query Frame = 0 

Query: 11  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 70
           NI       ASDDTLKSHR R RTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL
Sbjct: 101 NIHWNGSDMASDDTLKSHRPRQRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 160

Query: 71  GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 130
           GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT
Sbjct: 161 GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 220

Query: 131 VCK 134
           VCK
Sbjct: 221 VCK 223

[Close]
BLAST of Carg17128 vs. NCBI nr
Match: XP_022144205.1 (uncharacterized protein LOC111013658 isoform X1 [Momordica charantia])

HSP 1 Score: 220.7 bits (561), Expect = 7.5e-54
Identity = 112/123 (91.06%), Postives = 115/123 (93.50%), Query Frame = 0 

Query: 11  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 70
           N+       ASDDTLKSHR R+RTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL
Sbjct: 101 NLQWNGSDMASDDTLKSHRPRHRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 160

Query: 71  GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 130
           GKLEMSALWRYWRHFNLVDAFPNPSKEQLVD+VQRHFMSQQLDELQVIVGFVHAAKRLKT
Sbjct: 161 GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDLVQRHFMSQQLDELQVIVGFVHAAKRLKT 220

Query: 131 VCK 134
           VCK
Sbjct: 221 VCK 223

[Close]
BLAST of Carg17128 vs. ExPASy TrEMBL
Match: A0A6J1FHA1 (uncharacterized protein LOC111445752 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445752 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.6e-56
Identity = 115/123 (93.50%), Postives = 116/123 (94.31%), Query Frame = 0 

Query: 11  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 70
           N+       ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL
Sbjct: 101 NLQWNGSDMASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 160

Query: 71  GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 130
           GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT
Sbjct: 161 GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 220

Query: 131 VCK 134
           VCK
Sbjct: 221 VCK 223

[Close]
BLAST of Carg17128 vs. ExPASy TrEMBL
Match: A0A6J1J423 (uncharacterized protein LOC111481057 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481057 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 8.7e-56
Identity = 115/123 (93.50%), Postives = 116/123 (94.31%), Query Frame = 0 

Query: 11  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 70
           N+       ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL
Sbjct: 101 NMQWNGSDMASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 160

Query: 71  GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 130
           GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT
Sbjct: 161 GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 220

Query: 131 VCK 134
           VCK
Sbjct: 221 VCK 223

[Close]
BLAST of Carg17128 vs. ExPASy TrEMBL
Match: A0A6J1CR00 (uncharacterized protein LOC111013658 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013658 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.6e-54
Identity = 112/123 (91.06%), Postives = 115/123 (93.50%), Query Frame = 0 

Query: 11  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 70
           N+       ASDDTLKSHR R+RTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL
Sbjct: 101 NLQWNGSDMASDDTLKSHRPRHRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 160

Query: 71  GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 130
           GKLEMSALWRYWRHFNLVDAFPNPSKEQLVD+VQRHFMSQQLDELQVIVGFVHAAKRLKT
Sbjct: 161 GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDLVQRHFMSQQLDELQVIVGFVHAAKRLKT 220

Query: 131 VCK 134
           VCK
Sbjct: 221 VCK 223

[Close]
BLAST of Carg17128 vs. ExPASy TrEMBL
Match: A0A6J1FID1 (uncharacterized protein LOC111445752 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445752 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.2e-54
Identity = 114/123 (92.68%), Postives = 115/123 (93.50%), Query Frame = 0 

Query: 11  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 70
           N+       ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSM VDL
Sbjct: 101 NLQWNGSDMASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSM-VDL 160

Query: 71  GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 130
           GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT
Sbjct: 161 GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 220

Query: 131 VCK 134
           VCK
Sbjct: 221 VCK 222

[Close]
BLAST of Carg17128 vs. ExPASy TrEMBL
Match: A0A6J1IVT7 (uncharacterized protein LOC111481057 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481057 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.1e-54
Identity = 114/123 (92.68%), Postives = 115/123 (93.50%), Query Frame = 0 

Query: 11  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 70
           N+       ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSM VDL
Sbjct: 101 NMQWNGSDMASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSM-VDL 160

Query: 71  GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 130
           GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT
Sbjct: 161 GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 220

Query: 131 VCK 134
           VCK
Sbjct: 221 VCK 222

[Close]
BLAST of Carg17128 vs. TAIR 10
Match: AT1G19330.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 159.5 bits (402), Expect = 1.9e-39
Identity = 82/114 (71.93%), Postives = 93/114 (81.58%), Query Frame = 0 

Query: 20  ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALW 79
           AS+DTLK H+ + R  +SS SSHKT+SRS S +SQSK S  TP  +MKVDL KLEM AL 
Sbjct: 119 ASEDTLKPHKSKLRGQRSSRSSHKTMSRSLSSDSQSKSSGFTPPENMKVDLSKLEMPALL 178

Query: 80  RYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 134
            YWRHFNLVDA PNPSKEQL+D+VQRHFMSQQ+DELQVIVGFV AAKR+K  CK
Sbjct: 179 NYWRHFNLVDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAKRMKKACK 232

[Close]
BLAST of Carg17128 vs. TAIR 10
Match: AT1G19330.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 157.9 bits (398), Expect = 5.6e-39
Identity = 82/123 (66.67%), Postives = 93/123 (75.61%), Query Frame = 0 

Query: 11  NISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSMKVDL 70
           N         S+DTLK H+ + R  +SS SSHKT+SRS S +SQSK S  TP  +MKVDL
Sbjct: 105 NTQRNGSDMTSEDTLKPHKSKLRGQRSSRSSHKTMSRSLSSDSQSKSSGFTPPENMKVDL 164

Query: 71  GKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKT 130
            KLEM AL  YWRHFNLVDA PNPSKEQL+D+VQRHFMSQQ+DELQVIVGFV AAKR+K 
Sbjct: 165 SKLEMPALLNYWRHFNLVDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAKRMKK 224

Query: 131 VCK 134
            CK
Sbjct: 225 ACK 227

[Close]
BLAST of Carg17128 vs. TAIR 10
Match: AT1G19330.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1). )

HSP 1 Score: 154.8 bits (390), Expect = 4.7e-38
Identity = 82/115 (71.30%), Postives = 93/115 (80.87%), Query Frame = 0 

Query: 20  ASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSM-KVDLGKLEMSAL 79
           AS+DTLK H+ + R  +SS SSHKT+SRS S +SQSK S  TP  +M KVDL KLEM AL
Sbjct: 119 ASEDTLKPHKSKLRGQRSSRSSHKTMSRSLSSDSQSKSSGFTPPENMQKVDLSKLEMPAL 178

Query: 80  WRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 134
             YWRHFNLVDA PNPSKEQL+D+VQRHFMSQQ+DELQVIVGFV AAKR+K  CK
Sbjct: 179 LNYWRHFNLVDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAKRMKKACK 233

[Close]
BLAST of Carg17128 vs. TAIR 10
Match: AT1G75060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 141.7 bits (356), Expect = 4.1e-34
Identity = 76/129 (58.91%), Postives = 95/129 (73.64%), Query Frame = 0 

Query: 5   EIASSINISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRG 64
           E+  S   +H S  T ++DTLK H+ + R H+SS  S K + R  S +S SK S  TPR 
Sbjct: 106 EVDHSTQWNHPSDMT-TEDTLKPHKSKKRGHRSSRLSQKALYREVSCDSHSKISSITPRL 165

Query: 65  SMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHA 124
           +MKVDL KL+M+AL RYWRHFNLVDA PNP+KEQL+D++QRHFMSQQ+DELQVIVGFV A
Sbjct: 166 NMKVDLTKLDMAALLRYWRHFNLVDALPNPTKEQLIDIIQRHFMSQQMDELQVIVGFVQA 225

Query: 125 AKRLKTVCK 134
           A  +K  C+
Sbjct: 226 ATGMKKACQ 233

[Close]
BLAST of Carg17128 vs. TAIR 10
Match: AT1G75060.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 135.2 bits (339), Expect = 3.9e-32
Identity = 75/129 (58.14%), Postives = 94/129 (72.87%), Query Frame = 0 

Query: 5   EIASSINISHRSPTTASDDTLKSHRLRYRTHKSSGSSHKTISRSFSYESQSKGSISTPRG 64
           E+  S   +H S  T ++DTLK H+ + R H+SS  S K + R  S +S SK S  TPR 
Sbjct: 106 EVDHSTQWNHPSDMT-TEDTLKPHKSKKRGHRSSRLSQKALYREVSCDSHSKISSITPRL 165

Query: 65  SMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHA 124
           +M VDL KL+M+AL RYWRHFNLVDA PNP+KEQL+D++QRHFMSQQ+DELQVIVGFV A
Sbjct: 166 NM-VDLTKLDMAALLRYWRHFNLVDALPNPTKEQLIDIIQRHFMSQQMDELQVIVGFVQA 225

Query: 125 AKRLKTVCK 134
           A  +K  C+
Sbjct: 226 ATGMKKACQ 232

The following BLAST results are available for this feature:
BLAST of Carg17128 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037842.18.6e-66100.00hypothetical protein SDJN02_01473, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022939981.11.4e-5593.50uncharacterized protein LOC111445752 isoform X1 [Cucurbita moschata] >XP_0235232... [more]
XP_022982128.11.8e-5593.50uncharacterized protein LOC111481057 isoform X2 [Cucurbita maxima][more]
XP_038903295.15.8e-5492.68uncharacterized protein LOC120089924 [Benincasa hispida][more]
XP_022144205.17.5e-5491.06uncharacterized protein LOC111013658 isoform X1 [Momordica charantia][more]
BLAST of Carg17128 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17128 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FHA16.6e-5693.50uncharacterized protein LOC111445752 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1J4238.7e-5693.50uncharacterized protein LOC111481057 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1CR003.6e-5491.06uncharacterized protein LOC111013658 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1FID16.2e-5492.68uncharacterized protein LOC111445752 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1IVT78.1e-5492.68uncharacterized protein LOC111481057 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Carg17128 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G19330.11.9e-3971.93unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G19330.25.6e-3966.67unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G19330.34.7e-3871.30unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G75060.14.1e-3458.91unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G75060.23.9e-3258.14unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025718Histone deacetylase complex subunit SAP30, Sin3 binding domainPFAMPF13867SAP30_Sin3_bdgcoord: 73..126
e-value: 7.7E-23
score: 80.5
IPR038291SAP30, C-terminal domain superfamilyGENE3D6.10.160.20coord: 48..133
e-value: 1.6E-27
score: 97.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..62
NoneNo IPR availablePANTHERPTHR13286:SF11SUBFAMILY NOT NAMEDcoord: 18..133
IPR024145Histone deacetylase complex subunit SAP30/SAP30-likePANTHERPTHR13286SAP30coord: 18..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17128-RACarg17128-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0000118 histone deacetylase complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0003712 transcription coregulator activity