Carg17124 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17124
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description30S ribosomal protein S9
LocationCarg_Chr01: 12575054 .. 12576922 (-)
RNA-Seq ExpressionCarg17124
SyntenyCarg17124
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTAATTTTTTATGGAGGAGTAAATTGAGAATTGGGCGTTATCAAGTATTTAAGGACAATATAGTCAATTCACACACATTATCCCCTTTCACCTGCTCACCAGTCTCTCTACATCCACCGCAGTTTCAATTTTTGGAAGAAGCTACCTTCGTTCTGGATAGAGCACGAAAATGGCTACTTCTGTGTCCTCCCTCGCTTTCTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGATGCCAAACTCTCTGTCCTTTCCACGCTCAAAATCTCTTGTAATTTCCCACCCGAAATCCAATTCCCCACTCGTGGTATCTGCCTCCGCCACTTCCGCAGTGGAGACGGCGGAGCTTAAGAACTATGTGAAATCGAGGCTCCCTGGTGGCTTCGCTGCGCAAACGCTGATTGGCACTGGCCGCCGGAAATCTGCCGTTGCTCGCGTTGTTCTCCAAGAAGGCACTGGCAAAGTTATTATTAATTACCGCGACGCTAAGGTCTTCTATCTTTTCCCTTATTCGTGTACTTGCGTTTGGTTTCATCCATTTTAGCTTTACTATTTTTGGCAGTGGATGTTCTTTGGACGATTTAGGGTTGTTGTTTCTTCTGCTGGATTCGACTAGGTTCGTTTAATGGTAATGCGAATGTTTTTTTTTGGATTAAACCGAAGATTGTAACTTATAGGATCGTGATTTCTGTCTTTGATGCGCAAATTCTTGAACCATCTAGAGATGGAAGTGATTATTCAGTGTCTTTTCACTGTCCTTATAATTGATCTGCAGCAATTATTGTATTGAATTGAGATTGTGGAATAAACTTAGAACAACATTATCTACATTCTGGAGCATGTAAGTCTCTTAACGAGTAATTAAATTCTAAGCTTTCGGTACTTCATCTCATATGTTGAACATGGATTAGATTCCATTGCTTGCTGCCAAATTCGAAGGGATTGTGGAATAAGTGTTTTCATCAATCACAAGTTGAGTTTGAGTTTCCAGTGGAATGGTTCTTAATGCTAAAAGGCATGTCTATTAGGGGGATCGAGTAGTTCATTTATTCTTTCTCAGTGGATTTGGGAGTGAAAATGTGCTTTTCTTCTTCCACTTCCATCACATGTGGGAATCTTTACTTTCTGATGATGTTAGATCACATTGCAAATCCTTCGTTTGCCAGCGTTCATCTACATCTGTGCTCTAATATGTAAAGATATTGAGAAAATTTAGTGACCAAGTGTGTTTCATTTCTTGTTAGGATGCCATTTTGCCTTGAATGTTTATTGGGGTTTCCTGGTATTGATGCTTGGATAACCCCATTCAAATTATGAGTGTGGTTTAAGTAGAGAGAGTTGTACTCACCTCTGGGTTGGAATATACAATGTGTTGCAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCTTTGTTAACTTTGGGATATGAAAGTAGCTACGACGTATTCGTAAAAGCCGAAGGAGGTGGCCTCTCCGGCCAGGCTCAGGCAATCTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGCTGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGGGACTCTAGGGTTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGTTAAGGTTCCAATTCTTGTCGAATTGTTTTGCATACACCCTCTTTTCCTTCATTATTTGTACAACCCAGATGTTATTTTGTACTTTCTTTCCTCTCTAATCTAGTGTTATCTTAAAATATTTCTCCATATGAGCTCTAAGCTAGAACGAGGATATGTATTCAAAACGCCACCCATAATTGATCATCATAACTTTTTTTG

mRNA sequence

TTTTAATTTTTTATGGAGGAGTAAATTGAGAATTGGGCGTTATCAAGTATTTAAGGACAATATAGTCAATTCACACACATTATCCCCTTTCACCTGCTCACCAGTCTCTCTACATCCACCGCAGTTTCAATTTTTGGAAGAAGCTACCTTCGTTCTGGATAGAGCACGAAAATGGCTACTTCTGTGTCCTCCCTCGCTTTCTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGATGCCAAACTCTCTGTCCTTTCCACGCTCAAAATCTCTTGTAATTTCCCACCCGAAATCCAATTCCCCACTCGTGGTATCTGCCTCCGCCACTTCCGCAGTGGAGACGGCGGAGCTTAAGAACTATGTGAAATCGAGGCTCCCTGGTGGCTTCGCTGCGCAAACGCTGATTGGCACTGGCCGCCGGAAATCTGCCGTTGCTCGCGTTGTTCTCCAAGAAGGCACTGGCAAAGTTATTATTAATTACCGCGACGCTAAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCTTTGTTAACTTTGGGATATGAAAGTAGCTACGACGTATTCGTAAAAGCCGAAGGAGGTGGCCTCTCCGGCCAGGCTCAGGCAATCTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGCTGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGGGACTCTAGGGTTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGTTAAGGTTCCAATTCTTGTCGAATTGTTTTGCATACACCCTCTTTTCCTTCATTATTTGTACAACCCAGATGTTATTTTGTACTTTCTTTCCTCTCTAATCTAGTGTTATCTTAAAATATTTCTCCATATGAGCTCTAAGCTAGAACGAGGATATGTATTCAAAACGCCACCCATAATTGATCATCATAACTTTTTTTG

Coding sequence (CDS)

ATGGCTACTTCTGTGTCCTCCCTCGCTTTCTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGATGCCAAACTCTCTGTCCTTTCCACGCTCAAAATCTCTTGTAATTTCCCACCCGAAATCCAATTCCCCACTCGTGGTATCTGCCTCCGCCACTTCCGCAGTGGAGACGGCGGAGCTTAAGAACTATGTGAAATCGAGGCTCCCTGGTGGCTTCGCTGCGCAAACGCTGATTGGCACTGGCCGCCGGAAATCTGCCGTTGCTCGCGTTGTTCTCCAAGAAGGCACTGGCAAAGTTATTATTAATTACCGCGACGCTAAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCTTTGTTAACTTTGGGATATGAAAGTAGCTACGACGTATTCGTAAAAGCCGAAGGAGGTGGCCTCTCCGGCCAGGCTCAGGCAATCTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGCTGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGGGACTCTAGGGTTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGTTAA

Protein sequence

MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR
Homology
[Close]
BLAST of Carg17124 vs. NCBI nr
Match: XP_022940950.1 (30S ribosomal protein S9, chloroplastic [Cucurbita moschata] >KAG6608514.1 30S ribosomal protein S9, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037838.1 30S ribosomal protein S9, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 372.1 bits (954), Expect = 3.1e-99
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Carg17124 vs. NCBI nr
Match: XP_023523256.1 (30S ribosomal protein S9, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 368.6 bits (945), Expect = 3.4e-98
Identity = 201/204 (98.53%), Postives = 204/204 (100.00%), Query Frame = 0 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATSVSSLAFSLSSLSFSSQ+SQMPN+LSFPRSKSLVISHPKSNSPLVVSASATSAVETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQLSQMPNALSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPLLTLGYES+YDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Carg17124 vs. NCBI nr
Match: XP_022982074.1 (30S ribosomal protein S9, chloroplastic [Cucurbita maxima])

HSP 1 Score: 364.4 bits (934), Expect = 6.5e-97
Identity = 200/204 (98.04%), Postives = 202/204 (99.02%), Query Frame = 0 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATSVSSLAFSLSSLSFSSQVSQ+PN+LSFPRSKSLVISH KSNSPLVVSASATSAVETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHR PLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Carg17124 vs. NCBI nr
Match: XP_022143016.1 (30S ribosomal protein S9, chloroplastic [Momordica charantia])

HSP 1 Score: 344.7 bits (883), Expect = 5.3e-91
Identity = 185/204 (90.69%), Postives = 198/204 (97.06%), Query Frame = 0 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MA+S+SSLAFSLSSLSFSSQ+SQ PN LSFPRSKSLVISHP ++SPLVVSASA + VETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+++VKSRLPGGFAAQTLIGTGRRKSA+ARVV+QEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR+PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Carg17124 vs. NCBI nr
Match: XP_038903352.1 (30S ribosomal protein S9, chloroplastic [Benincasa hispida])

HSP 1 Score: 338.2 bits (866), Expect = 5.0e-89
Identity = 185/204 (90.69%), Postives = 194/204 (95.10%), Query Frame = 0 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATSVSSLAFSLSSLSFSSQVS  PN+LSFPRSKSL ISH  S +PLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSHKPNALSFPRSKSLQISHASSTTPLVVSASAAAGVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +L+++VKS LPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLRSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Carg17124 vs. ExPASy Swiss-Prot
Match: Q9XJ27 (30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 PE=2 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 3.1e-78
Identity = 161/206 (78.16%), Postives = 179/206 (86.89%), Query Frame = 0 

Query: 4   SVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAV-----E 63
           S+++LA SLSSLSFSSQVSQ PN++SFPR+ S+     KS     +S +AT +      E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLW 123
             ELK YVKSRLPGGFAAQ +IGTGRRK A+ARVVLQEGTGKVIINYRDAKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLL 183
           LQYVKVPL+TLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVSADHRSPLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDSRVVERKKAGLKKARKAPQFSKR 205
           TRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

[Close]
BLAST of Carg17124 vs. ExPASy Swiss-Prot
Match: P82278 (30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE=1 SV=2)

HSP 1 Score: 280.0 bits (715), Expect = 2.1e-74
Identity = 151/208 (72.60%), Postives = 176/208 (84.62%), Query Frame = 0 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSA---- 60
           MA S+SSL  S +SLSF+S ++  P +L   R+K   +S+P    PLV++A++ +A    
Sbjct: 1   MAVSISSLTSSFASLSFTSNLTPKPQTLPMARTKPFSLSNPAVVKPLVITATSATAPVEV 60

Query: 61  VETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNP 120
            ETA+L+ +VKSRLPGGFAAQT+IGTGRRK A+ARVVLQEGTGK IINYRDAKEYLQGNP
Sbjct: 61  AETADLEKFVKSRLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNP 120

Query: 121 LWLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEG 180
           LWLQYVK PL TLGYE++YDVFVKA GGGLSGQAQAISLG+ARALLKVSA HR+PLK+EG
Sbjct: 121 LWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEG 180

Query: 181 LLTRDSRVVERKKAGLKKARKAPQFSKR 205
           LLTRDSR+VERKK GLKKARKAPQFSKR
Sbjct: 181 LLTRDSRIVERKKPGLKKARKAPQFSKR 208

[Close]
BLAST of Carg17124 vs. ExPASy Swiss-Prot
Match: Q8DMK7 (30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpsI PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 8.6e-36
Identity = 79/125 (63.20%), Postives = 98/125 (78.40%), Query Frame = 0 

Query: 80  IGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFV 139
           +GTGRRKSAVARV L  G+G++ IN R+  +YLQ NP++L  VK PL TLG E+SYD++V
Sbjct: 13  LGTGRRKSAVARVRLIPGSGQLWINGRNGADYLQNNPIYLNLVKAPLETLGLENSYDIYV 72

Query: 140 KAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERKKAGLKKARKAP 199
            A GGGL+GQA AI LGIARAL ++  ++R PLK EG LTRD R  ER+K GL+KARKAP
Sbjct: 73  NATGGGLTGQADAIRLGIARALCQLDIENRKPLKTEGYLTRDPRAKERRKYGLRKARKAP 132

Query: 200 QFSKR 205
           Q+SKR
Sbjct: 133 QYSKR 137

[Close]
BLAST of Carg17124 vs. ExPASy Swiss-Prot
Match: Q9MUV1 (30S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-35
Identity = 83/125 (66.40%), Postives = 94/125 (75.20%), Query Frame = 0 

Query: 80  IGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFV 139
           +GTGRRKSAVARV L  G G+VIIN      YLQ N  +L  V+ PL TLG E +YD+ V
Sbjct: 13  LGTGRRKSAVARVRLVPGNGEVIINGLPGTNYLQFNGSYLSAVRSPLETLGLEDNYDIIV 72

Query: 140 KAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERKKAGLKKARKAP 199
           KA GGGL+GQA+AI LG+ARAL  +   +R PLKKEG LTRDSRV ERKK GLKKARKAP
Sbjct: 73  KAVGGGLTGQAEAIRLGVARALCTIDTSNRHPLKKEGFLTRDSRVKERKKYGLKKARKAP 132

Query: 200 QFSKR 205
           QFSKR
Sbjct: 133 QFSKR 137

[Close]
BLAST of Carg17124 vs. ExPASy Swiss-Prot
Match: B2ITM7 (30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpsI PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.6e-34
Identity = 76/124 (61.29%), Postives = 93/124 (75.00%), Query Frame = 0 

Query: 81  GTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFVK 140
           GTGRRK+AVARV L  GTG++ +N +D   Y Q NP +L  +K PL TLG E+ YD+ VK
Sbjct: 15  GTGRRKNAVARVRLVPGTGQLTVNGKDGNLYFQFNPNYLGVIKAPLETLGLENEYDILVK 74

Query: 141 AEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQ 200
           AEGGGL+GQA ++ LG+ARAL ++  D+R PLK EG LTRD R  ERKK GL KARKAPQ
Sbjct: 75  AEGGGLTGQADSVRLGVARALCQLDPDNRPPLKTEGYLTRDPRAKERKKYGLHKARKAPQ 134

Query: 201 FSKR 205
           +SKR
Sbjct: 135 YSKR 138

[Close]
BLAST of Carg17124 vs. ExPASy TrEMBL
Match: A0A6J1FS60 (30S ribosomal protein S9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446382 PE=3 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.5e-99
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Carg17124 vs. ExPASy TrEMBL
Match: A0A6J1J3K2 (30S ribosomal protein S9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481030 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.1e-97
Identity = 200/204 (98.04%), Postives = 202/204 (99.02%), Query Frame = 0 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATSVSSLAFSLSSLSFSSQVSQ+PN+LSFPRSKSLVISH KSNSPLVVSASATSAVETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHR PLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Carg17124 vs. ExPASy TrEMBL
Match: A0A6J1CNY0 (30S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013001 PE=3 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.6e-91
Identity = 185/204 (90.69%), Postives = 198/204 (97.06%), Query Frame = 0 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MA+S+SSLAFSLSSLSFSSQ+SQ PN LSFPRSKSLVISHP ++SPLVVSASA + VETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+++VKSRLPGGFAAQTLIGTGRRKSA+ARVV+QEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR+PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Carg17124 vs. ExPASy TrEMBL
Match: A0A5A7UBW5 (30S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00010 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.6e-88
Identity = 184/204 (90.20%), Postives = 194/204 (95.10%), Query Frame = 0 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATS+SSLAFSLSSLSFSSQVS  P +LSFPRSKSL+IS   S SPL+VSASA +AVETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +LK++VKS LPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Carg17124 vs. ExPASy TrEMBL
Match: A0A1S3CRR0 (30S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.6e-88
Identity = 184/204 (90.20%), Postives = 194/204 (95.10%), Query Frame = 0 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATS+SSLAFSLSSLSFSSQVS  P +LSFPRSKSL+IS   S SPL+VSASA +AVETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +LK++VKS LPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Carg17124 vs. TAIR 10
Match: AT1G74970.1 (ribosomal protein S9 )

HSP 1 Score: 292.7 bits (748), Expect = 2.2e-79
Identity = 161/206 (78.16%), Postives = 179/206 (86.89%), Query Frame = 0 

Query: 4   SVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAV-----E 63
           S+++LA SLSSLSFSSQVSQ PN++SFPR+ S+     KS     +S +AT +      E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLW 123
             ELK YVKSRLPGGFAAQ +IGTGRRK A+ARVVLQEGTGKVIINYRDAKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLL 183
           LQYVKVPL+TLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVSADHRSPLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDSRVVERKKAGLKKARKAPQFSKR 205
           TRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

[Close]
BLAST of Carg17124 vs. TAIR 10
Match: AT3G49080.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 7.1e-17
Identity = 59/153 (38.56%), Postives = 83/153 (54.25%), Query Frame = 0 

Query: 52  SATSAVETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEY 111
           S+ + +E    ++  K+R+          GTGRRK ++ARV +Q G GK  +N ++   Y
Sbjct: 279 SSRAEIELQMQEDIAKARVRQVDETGRAYGTGRRKCSIARVWIQPGEGKFQVNEKEFDVY 338

Query: 112 LQGNPLWLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSP 171
                     ++ PL        +D+    +GGG +GQ  AI LGI+RAL     D R+ 
Sbjct: 339 FPMLDHRAALLR-PLAETKTLGRWDIKCTVKGGGTTGQVGAIQLGISRALQNWEPDMRTS 398

Query: 172 LKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR 205
           L+  G LTRDSRVVERKK G  KARK+ Q+ KR
Sbjct: 399 LRAAGFLTRDSRVVERKKPGKAKARKSFQWVKR 430

The following BLAST results are available for this feature:
BLAST of Carg17124 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022940950.13.1e-99100.0030S ribosomal protein S9, chloroplastic [Cucurbita moschata] >KAG6608514.1 30S r... [more]
XP_023523256.13.4e-9898.5330S ribosomal protein S9, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_022982074.16.5e-9798.0430S ribosomal protein S9, chloroplastic [Cucurbita maxima][more]
XP_022143016.15.3e-9190.6930S ribosomal protein S9, chloroplastic [Momordica charantia][more]
XP_038903352.15.0e-8990.6930S ribosomal protein S9, chloroplastic [Benincasa hispida][more]
BLAST of Carg17124 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9XJ273.1e-7878.1630S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 ... [more]
P822782.1e-7472.6030S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE... [more]
Q8DMK78.6e-3663.2030S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722... [more]
Q9MUV11.5e-3566.4030S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE... [more]
B2ITM73.6e-3461.2930S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) O... [more]
BLAST of Carg17124 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FS601.5e-99100.0030S ribosomal protein S9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1J3K23.1e-9798.0430S ribosomal protein S9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481... [more]
A0A6J1CNY02.6e-9190.6930S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A5A7UBW51.6e-8890.2030S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3CRR01.6e-8890.2030S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 ... [more]
BLAST of Carg17124 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G74970.12.2e-7978.16ribosomal protein S9 [more]
AT3G49080.17.1e-1738.56Ribosomal protein S5 domain 2-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000754Ribosomal protein S9PFAMPF00380Ribosomal_S9coord: 83..204
e-value: 1.1E-41
score: 142.2
IPR000754Ribosomal protein S9PANTHERPTHR21569RIBOSOMAL PROTEIN S9coord: 46..204
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 70..204
e-value: 8.8E-50
score: 170.3
NoneNo IPR availablePANTHERPTHR21569:SF128S RIBOSOMAL PROTEIN S9, MITOCHONDRIALcoord: 46..204
IPR020574Ribosomal protein S9, conserved sitePROSITEPS00360RIBOSOMAL_S9coord: 143..161
IPR023035Ribosomal protein S9, bacterial/plastidHAMAPMF_00532_BRibosomal_S9_Bcoord: 74..204
score: 32.512802
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 78..204

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17124-RACarg17124-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0000312 plastid small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome