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Carg17124 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTAATTTTTTATGGAGGAGTAAATTGAGAATTGGGCGTTATCAAGTATTTAAGGACAATATAGTCAATTCACACACATTATCCCCTTTCACCTGCTCACCAGTCTCTCTACATCCACCGCAGTTTCAATTTTTGGAAGAAGCTACCTTCGTTCTGGATAGAGCACGAAAATGGCTACTTCTGTGTCCTCCCTCGCTTTCTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGATGCCAAACTCTCTGTCCTTTCCACGCTCAAAATCTCTTGTAATTTCCCACCCGAAATCCAATTCCCCACTCGTGGTATCTGCCTCCGCCACTTCCGCAGTGGAGACGGCGGAGCTTAAGAACTATGTGAAATCGAGGCTCCCTGGTGGCTTCGCTGCGCAAACGCTGATTGGCACTGGCCGCCGGAAATCTGCCGTTGCTCGCGTTGTTCTCCAAGAAGGCACTGGCAAAGTTATTATTAATTACCGCGACGCTAAGGTCTTCTATCTTTTCCCTTATTCGTGTACTTGCGTTTGGTTTCATCCATTTTAGCTTTACTATTTTTGGCAGTGGATGTTCTTTGGACGATTTAGGGTTGTTGTTTCTTCTGCTGGATTCGACTAGGTTCGTTTAATGGTAATGCGAATGTTTTTTTTTGGATTAAACCGAAGATTGTAACTTATAGGATCGTGATTTCTGTCTTTGATGCGCAAATTCTTGAACCATCTAGAGATGGAAGTGATTATTCAGTGTCTTTTCACTGTCCTTATAATTGATCTGCAGCAATTATTGTATTGAATTGAGATTGTGGAATAAACTTAGAACAACATTATCTACATTCTGGAGCATGTAAGTCTCTTAACGAGTAATTAAATTCTAAGCTTTCGGTACTTCATCTCATATGTTGAACATGGATTAGATTCCATTGCTTGCTGCCAAATTCGAAGGGATTGTGGAATAAGTGTTTTCATCAATCACAAGTTGAGTTTGAGTTTCCAGTGGAATGGTTCTTAATGCTAAAAGGCATGTCTATTAGGGGGATCGAGTAGTTCATTTATTCTTTCTCAGTGGATTTGGGAGTGAAAATGTGCTTTTCTTCTTCCACTTCCATCACATGTGGGAATCTTTACTTTCTGATGATGTTAGATCACATTGCAAATCCTTCGTTTGCCAGCGTTCATCTACATCTGTGCTCTAATATGTAAAGATATTGAGAAAATTTAGTGACCAAGTGTGTTTCATTTCTTGTTAGGATGCCATTTTGCCTTGAATGTTTATTGGGGTTTCCTGGTATTGATGCTTGGATAACCCCATTCAAATTATGAGTGTGGTTTAAGTAGAGAGAGTTGTACTCACCTCTGGGTTGGAATATACAATGTGTTGCAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCTTTGTTAACTTTGGGATATGAAAGTAGCTACGACGTATTCGTAAAAGCCGAAGGAGGTGGCCTCTCCGGCCAGGCTCAGGCAATCTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGCTGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGGGACTCTAGGGTTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGTTAAGGTTCCAATTCTTGTCGAATTGTTTTGCATACACCCTCTTTTCCTTCATTATTTGTACAACCCAGATGTTATTTTGTACTTTCTTTCCTCTCTAATCTAGTGTTATCTTAAAATATTTCTCCATATGAGCTCTAAGCTAGAACGAGGATATGTATTCAAAACGCCACCCATAATTGATCATCATAACTTTTTTTG TTTTAATTTTTTATGGAGGAGTAAATTGAGAATTGGGCGTTATCAAGTATTTAAGGACAATATAGTCAATTCACACACATTATCCCCTTTCACCTGCTCACCAGTCTCTCTACATCCACCGCAGTTTCAATTTTTGGAAGAAGCTACCTTCGTTCTGGATAGAGCACGAAAATGGCTACTTCTGTGTCCTCCCTCGCTTTCTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGATGCCAAACTCTCTGTCCTTTCCACGCTCAAAATCTCTTGTAATTTCCCACCCGAAATCCAATTCCCCACTCGTGGTATCTGCCTCCGCCACTTCCGCAGTGGAGACGGCGGAGCTTAAGAACTATGTGAAATCGAGGCTCCCTGGTGGCTTCGCTGCGCAAACGCTGATTGGCACTGGCCGCCGGAAATCTGCCGTTGCTCGCGTTGTTCTCCAAGAAGGCACTGGCAAAGTTATTATTAATTACCGCGACGCTAAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCTTTGTTAACTTTGGGATATGAAAGTAGCTACGACGTATTCGTAAAAGCCGAAGGAGGTGGCCTCTCCGGCCAGGCTCAGGCAATCTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGCTGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGGGACTCTAGGGTTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGTTAAGGTTCCAATTCTTGTCGAATTGTTTTGCATACACCCTCTTTTCCTTCATTATTTGTACAACCCAGATGTTATTTTGTACTTTCTTTCCTCTCTAATCTAGTGTTATCTTAAAATATTTCTCCATATGAGCTCTAAGCTAGAACGAGGATATGTATTCAAAACGCCACCCATAATTGATCATCATAACTTTTTTTG ATGGCTACTTCTGTGTCCTCCCTCGCTTTCTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGATGCCAAACTCTCTGTCCTTTCCACGCTCAAAATCTCTTGTAATTTCCCACCCGAAATCCAATTCCCCACTCGTGGTATCTGCCTCCGCCACTTCCGCAGTGGAGACGGCGGAGCTTAAGAACTATGTGAAATCGAGGCTCCCTGGTGGCTTCGCTGCGCAAACGCTGATTGGCACTGGCCGCCGGAAATCTGCCGTTGCTCGCGTTGTTCTCCAAGAAGGCACTGGCAAAGTTATTATTAATTACCGCGACGCTAAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCTTTGTTAACTTTGGGATATGAAAGTAGCTACGACGTATTCGTAAAAGCCGAAGGAGGTGGCCTCTCCGGCCAGGCTCAGGCAATCTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGCTGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGGGACTCTAGGGTTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGTTAA MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR Homology
BLAST of Carg17124 vs. NCBI nr
Match: XP_022940950.1 (30S ribosomal protein S9, chloroplastic [Cucurbita moschata] >KAG6608514.1 30S ribosomal protein S9, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037838.1 30S ribosomal protein S9, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 372.1 bits (954), Expect = 3.1e-99 Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
BLAST of Carg17124 vs. NCBI nr
Match: XP_023523256.1 (30S ribosomal protein S9, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 368.6 bits (945), Expect = 3.4e-98 Identity = 201/204 (98.53%), Postives = 204/204 (100.00%), Query Frame = 0
BLAST of Carg17124 vs. NCBI nr
Match: XP_022982074.1 (30S ribosomal protein S9, chloroplastic [Cucurbita maxima]) HSP 1 Score: 364.4 bits (934), Expect = 6.5e-97 Identity = 200/204 (98.04%), Postives = 202/204 (99.02%), Query Frame = 0
BLAST of Carg17124 vs. NCBI nr
Match: XP_022143016.1 (30S ribosomal protein S9, chloroplastic [Momordica charantia]) HSP 1 Score: 344.7 bits (883), Expect = 5.3e-91 Identity = 185/204 (90.69%), Postives = 198/204 (97.06%), Query Frame = 0
BLAST of Carg17124 vs. NCBI nr
Match: XP_038903352.1 (30S ribosomal protein S9, chloroplastic [Benincasa hispida]) HSP 1 Score: 338.2 bits (866), Expect = 5.0e-89 Identity = 185/204 (90.69%), Postives = 194/204 (95.10%), Query Frame = 0
BLAST of Carg17124 vs. ExPASy Swiss-Prot
Match: Q9XJ27 (30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 PE=2 SV=1) HSP 1 Score: 292.7 bits (748), Expect = 3.1e-78 Identity = 161/206 (78.16%), Postives = 179/206 (86.89%), Query Frame = 0
BLAST of Carg17124 vs. ExPASy Swiss-Prot
Match: P82278 (30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE=1 SV=2) HSP 1 Score: 280.0 bits (715), Expect = 2.1e-74 Identity = 151/208 (72.60%), Postives = 176/208 (84.62%), Query Frame = 0
BLAST of Carg17124 vs. ExPASy Swiss-Prot
Match: Q8DMK7 (30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpsI PE=3 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 8.6e-36 Identity = 79/125 (63.20%), Postives = 98/125 (78.40%), Query Frame = 0
BLAST of Carg17124 vs. ExPASy Swiss-Prot
Match: Q9MUV1 (30S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE=3 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 1.5e-35 Identity = 83/125 (66.40%), Postives = 94/125 (75.20%), Query Frame = 0
BLAST of Carg17124 vs. ExPASy Swiss-Prot
Match: B2ITM7 (30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpsI PE=3 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 3.6e-34 Identity = 76/124 (61.29%), Postives = 93/124 (75.00%), Query Frame = 0
BLAST of Carg17124 vs. ExPASy TrEMBL
Match: A0A6J1FS60 (30S ribosomal protein S9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446382 PE=3 SV=1) HSP 1 Score: 372.1 bits (954), Expect = 1.5e-99 Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
BLAST of Carg17124 vs. ExPASy TrEMBL
Match: A0A6J1J3K2 (30S ribosomal protein S9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481030 PE=3 SV=1) HSP 1 Score: 364.4 bits (934), Expect = 3.1e-97 Identity = 200/204 (98.04%), Postives = 202/204 (99.02%), Query Frame = 0
BLAST of Carg17124 vs. ExPASy TrEMBL
Match: A0A6J1CNY0 (30S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013001 PE=3 SV=1) HSP 1 Score: 344.7 bits (883), Expect = 2.6e-91 Identity = 185/204 (90.69%), Postives = 198/204 (97.06%), Query Frame = 0
BLAST of Carg17124 vs. ExPASy TrEMBL
Match: A0A5A7UBW5 (30S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00010 PE=3 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 1.6e-88 Identity = 184/204 (90.20%), Postives = 194/204 (95.10%), Query Frame = 0
BLAST of Carg17124 vs. ExPASy TrEMBL
Match: A0A1S3CRR0 (30S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 PE=3 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 1.6e-88 Identity = 184/204 (90.20%), Postives = 194/204 (95.10%), Query Frame = 0
BLAST of Carg17124 vs. TAIR 10
Match: AT1G74970.1 (ribosomal protein S9 ) HSP 1 Score: 292.7 bits (748), Expect = 2.2e-79 Identity = 161/206 (78.16%), Postives = 179/206 (86.89%), Query Frame = 0
BLAST of Carg17124 vs. TAIR 10
Match: AT3G49080.1 (Ribosomal protein S5 domain 2-like superfamily protein ) HSP 1 Score: 85.1 bits (209), Expect = 7.1e-17 Identity = 59/153 (38.56%), Postives = 83/153 (54.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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