Carg17092 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17092
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHistidine-rich glycoprotein-like isoform X2
LocationCarg_Chr09: 4541968 .. 4542351 (+)
RNA-Seq ExpressionCarg17092
SyntenyCarg17092
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCAACTAAATCAACACCGAGAAGGGTTCTGATCGTCGTCACGATGATGGTTGCTCTTATCATCGTCGGCTTGCTTCCAATGGCAGCGGAGGCGACTGTCCCTGCCGGGGGTGCAGTCTCTCAATGCATCCAGGGTTGCACAAAGTCATTGGCCGGTTTAACGTCTGGTTATTGCCTTACTCTTTGTTCAGCTGAGTTCCACCCTCTATCTGCTCACCCACATCATCATGAACATGATCATAGCCATGCTCATGTTCGTGTTGATGCTCATGCTCACGTTGATGATCATGGTCACGTTCATGCTCATGTTCATGCACATGTTGATGGTCATGGTCATCTTCAAGCTCATGTTCATGCTCATGCTCATGCGCTTCATTAG

mRNA sequence

ATGAACTCAACTAAATCAACACCGAGAAGGGTTCTGATCGTCGTCACGATGATGGTTGCTCTTATCATCGTCGGCTTGCTTCCAATGGCAGCGGAGGCGACTGTCCCTGCCGGGGGTGCAGTCTCTCAATGCATCCAGGGTTGCACAAAGTCATTGGCCGGTTTAACGTCTGGTTATTGCCTTACTCTTTGTTCAGCTGAGTTCCACCCTCTATCTGCTCACCCACATCATCATGAACATGATCATAGCCATGCTCATGTTCGTGTTGATGCTCATGCTCACGTTGATGATCATGGTCACGTTCATGCTCATGTTCATGCACATGTTGATGGTCATGGTCATCTTCAAGCTCATGTTCATGCTCATGCTCATGCGCTTCATTAG

Coding sequence (CDS)

ATGAACTCAACTAAATCAACACCGAGAAGGGTTCTGATCGTCGTCACGATGATGGTTGCTCTTATCATCGTCGGCTTGCTTCCAATGGCAGCGGAGGCGACTGTCCCTGCCGGGGGTGCAGTCTCTCAATGCATCCAGGGTTGCACAAAGTCATTGGCCGGTTTAACGTCTGGTTATTGCCTTACTCTTTGTTCAGCTGAGTTCCACCCTCTATCTGCTCACCCACATCATCATGAACATGATCATAGCCATGCTCATGTTCGTGTTGATGCTCATGCTCACGTTGATGATCATGGTCACGTTCATGCTCATGTTCATGCACATGTTGATGGTCATGGTCATCTTCAAGCTCATGTTCATGCTCATGCTCATGCGCTTCATTAG

Protein sequence

MNSTKSTPRRVLIVVTMMVALIIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAGLTSGYCLTLCSAEFHPLSAHPHHHEHDHSHAHVRVDAHAHVDDHGHVHAHVHAHVDGHGHLQAHVHAHAHALH
Homology
BLAST of Carg17092 vs. NCBI nr
Match: KAG6591952.1 (hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024824.1 hypothetical protein SDJN02_13643, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.5 bits (615), Expect = 3.9e-60
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query: 1   MNSTKSTPRRVLIVVTMMVALIIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAGLTSGYC 60
           MNSTKSTPRRVLIVVTMMVALIIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAGLTSGYC
Sbjct: 1   MNSTKSTPRRVLIVVTMMVALIIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAGLTSGYC 60

Query: 61  LTLCSAEFHPLSAHPHHHEHDHSHAHVRVDAHAHVDDHGHVHAHVHAHVDGHGHLQAHVH 120
           LTLCSAEFHPLSAHPHHHEHDHSHAHVRVDAHAHVDDHGHVHAHVHAHVDGHGHLQAHVH
Sbjct: 61  LTLCSAEFHPLSAHPHHHEHDHSHAHVRVDAHAHVDDHGHVHAHVHAHVDGHGHLQAHVH 120

Query: 121 AHAHALH 128
           AHAHALH
Sbjct: 121 AHAHALH 127

BLAST of Carg17092 vs. NCBI nr
Match: KAA0064320.1 (histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa] >TYK20266.1 histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-07
Identity = 51/121 (42.15%), Postives = 67/121 (55.37%), Query Frame = 0

Query: 12  LIVVTMMVALIIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAGLTSGYCLTLCSAEFHPL 71
           +IV T+ + ++    LPM AEA +P  G ++QCIQGCT+SL+ LT GYC+ +C AE+HPL
Sbjct: 1   MIVATLSIVIV---SLPMGAEA-IPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPL 60

Query: 72  S-----AHPHHH---EHDHSHAHVRVDAHAHVDDHGHVHAHVHAHVDGHGHLQAHVHAHA 125
           +      H  HH   EH H H       H H + H H H H H HV    H + HV    
Sbjct: 61  TNPIQDTHQKHHVQVEHHHEH-------HVHFEHH-HEHRHEHHHVQVEHHHEHHVQVEH 109

BLAST of Carg17092 vs. NCBI nr
Match: KAE8649837.1 (hypothetical protein Csa_012364 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-06
Identity = 58/136 (42.65%), Postives = 75/136 (55.15%), Query Frame = 0

Query: 7   TPRRVLIV--VTMMVAL--IIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAGLTSGYCLT 66
           T R V IV  +TM++A   I++ L PM A+A +P  G ++QCIQGCTKSL+ LT GYC+ 
Sbjct: 10  TSRMVTIVPIMTMIIATVSIVIVLFPMGADA-IPLVGPIAQCIQGCTKSLSTLTPGYCMN 69

Query: 67  LCSAEFHPL--------------SAHPHHH---EHDHSHAHVRVDAHAHVDDHGHVHAHV 121
           LC AE+ PL              + H  HH   EH H H HV+V+ H   + H  V  H 
Sbjct: 70  LCGAEYSPLANTVKNTALANTVQNIHQEHHVQVEHHHEH-HVQVEHHH--EHHVQVEHHH 129

BLAST of Carg17092 vs. NCBI nr
Match: CAD5218578.1 (unnamed protein product [Bursaphelenchus okinawaensis] >CAG9111039.1 unnamed protein product [Bursaphelenchus okinawaensis])

HSP 1 Score: 61.6 bits (148), Expect = 5.6e-06
Identity = 35/60 (58.33%), Postives = 37/60 (61.67%), Query Frame = 0

Query: 66  AEFHPLSAHPHHHEHDHSHAHVRVDAHAHVDDHGHVHAHVHAHVDGHGHLQAHVHAHAHA 125
           A+ HP  AH H H H H+HAH    AHAH D H H HAH HAH   H H  AH HAHAHA
Sbjct: 42  ADAHP-HAHAHAHAHAHAHAHAHAHAHAHADAHPHAHAHAHAHAHAHAHAHAHAHAHAHA 100

BLAST of Carg17092 vs. NCBI nr
Match: CAD5209452.1 (unnamed protein product [Bursaphelenchus okinawaensis] >CAG9089349.1 unnamed protein product [Bursaphelenchus okinawaensis])

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-05
Identity = 33/53 (62.26%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 73   AHPHHHEHDHSHAHVRVDAHAHVDDHGHVHAHVHAHVDGHGHLQAHVHAHAHA 126
            AH H H H H+HAH    AHAH   H H HAHVHAH   H H  AHVHAHAHA
Sbjct: 2311 AHAHAHAHVHAHAHAHAHAHAHAHAHAHAHAHVHAHAHAHAHAHAHVHAHAHA 2363

BLAST of Carg17092 vs. ExPASy Swiss-Prot
Match: A9GP90 (Urease accessory protein UreG OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=ureG PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-05
Identity = 27/52 (51.92%), Postives = 29/52 (55.77%), Query Frame = 0

Query: 74  HPHHHEHDHSHAHVRVDAHAHVDDHGHVHAHVHAHVDGHGHLQAHVHAHAHA 126
           H H H+HDH H HV    H H  +H H H H H H  GH H  AH HAH HA
Sbjct: 18  HDHVHDHDHDHDHVHGGGHRHAHEHEHAHEHAHGHEHGHAHAHAHAHAHEHA 69

BLAST of Carg17092 vs. ExPASy TrEMBL
Match: A0A5A7VAR8 (Histidine-rich glycoprotein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G004060 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 51/121 (42.15%), Postives = 67/121 (55.37%), Query Frame = 0

Query: 12  LIVVTMMVALIIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAGLTSGYCLTLCSAEFHPL 71
           +IV T+ + ++    LPM AEA +P  G ++QCIQGCT+SL+ LT GYC+ +C AE+HPL
Sbjct: 1   MIVATLSIVIV---SLPMGAEA-IPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPL 60

Query: 72  S-----AHPHHH---EHDHSHAHVRVDAHAHVDDHGHVHAHVHAHVDGHGHLQAHVHAHA 125
           +      H  HH   EH H H       H H + H H H H H HV    H + HV    
Sbjct: 61  TNPIQDTHQKHHVQVEHHHEH-------HVHFEHH-HEHRHEHHHVQVEHHHEHHVQVEH 109

BLAST of Carg17092 vs. ExPASy TrEMBL
Match: A0A401QIR4 (Uncharacterized protein (Fragment) OS=Scyliorhinus torazame OX=75743 GN=scyTo_0025968 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.9e-06
Identity = 33/53 (62.26%), Postives = 33/53 (62.26%), Query Frame = 0

Query: 73  AHPHHHEHDHSHAHVRVDAHAHVDDHGHVHAHVHAHVDGHGHLQAHVHAHAHA 126
           AH H H H H HAH   DAHAH   H HVHAH HAH D H H  AH H HAHA
Sbjct: 140 AHAHVHAHAHVHAHAHADAHAHAHAHVHVHAHAHAHADAHAHADAHAHVHAHA 192

BLAST of Carg17092 vs. ExPASy TrEMBL
Match: A0A401QK83 (Uncharacterized protein (Fragment) OS=Scyliorhinus torazame OX=75743 GN=scyTo_0026490 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-05
Identity = 33/55 (60.00%), Postives = 35/55 (63.64%), Query Frame = 0

Query: 73  AHPHHHEHDHSHAHVRVDAHAHV--DDHGHVHAHVHAHVDGHGHLQAHVHAHAHA 126
           AH H H H H+HAHV   AH HV   DH H HAH HAHV  H H+ AH H HAHA
Sbjct: 160 AHDHAHAHAHAHAHVHAHAHVHVHAHDHAHAHAHAHAHVHAHAHVHAHAHVHAHA 214

BLAST of Carg17092 vs. ExPASy TrEMBL
Match: A0A401QL29 (Uncharacterized protein (Fragment) OS=Scyliorhinus torazame OX=75743 GN=scyTo_0026721 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 31/52 (59.62%), Postives = 32/52 (61.54%), Query Frame = 0

Query: 73  AHPHHHEHDHSHAHVRVDAHAHVDDHGHVHAHVHAHVDGHGHLQAHVHAHAH 125
           AH H H H H+HAHV   AH H   H HVHAH HAHV  H H   HVH HAH
Sbjct: 78  AHVHAHVHAHAHAHVHAHAHVHAHVHAHVHAHAHAHVHAHAHAHVHVHVHAH 129

BLAST of Carg17092 vs. ExPASy TrEMBL
Match: A0A7L5Y3L7 (Urease accessory protein UreE OS=Burkholderiaceae bacterium OX=2030806 GN=ureE PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-04
Identity = 30/52 (57.69%), Postives = 31/52 (59.62%), Query Frame = 0

Query: 74  HPHHHEHDHSHAHVRVDAHAHVDDHGHVHAHVHAHVDGHGHLQAHVHAHAHA 126
           H H H H H+HAH    AHAH   H H HAH HAH   H H  AH HAHAHA
Sbjct: 153 HSHGHAHAHAHAHAHAHAHAHAHAHAHAHAHAHAHAHAHAHAHAHAHAHAHA 204

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6591952.13.9e-60100.00hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0064320.12.3e-0742.15histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa] >TYK20266... [more]
KAE8649837.14.3e-0642.65hypothetical protein Csa_012364 [Cucumis sativus][more]
CAD5218578.15.6e-0658.33unnamed protein product [Bursaphelenchus okinawaensis] >CAG9111039.1 unnamed pro... [more]
CAD5209452.11.6e-0562.26unnamed protein product [Bursaphelenchus okinawaensis] >CAG9089349.1 unnamed pro... [more]
Match NameE-valueIdentityDescription
A9GP901.3e-0551.92Urease accessory protein UreG OS=Sorangium cellulosum (strain So ce56) OX=448385... [more]
Match NameE-valueIdentityDescription
A0A5A7VAR81.1e-0742.15Histidine-rich glycoprotein-like isoform X2 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A401QIR47.9e-0662.26Uncharacterized protein (Fragment) OS=Scyliorhinus torazame OX=75743 GN=scyTo_00... [more]
A0A401QK833.9e-0560.00Uncharacterized protein (Fragment) OS=Scyliorhinus torazame OX=75743 GN=scyTo_00... [more]
A0A401QL291.1e-0459.62Uncharacterized protein (Fragment) OS=Scyliorhinus torazame OX=75743 GN=scyTo_00... [more]
A0A7L5Y3L71.5e-0457.69Urease accessory protein UreE OS=Burkholderiaceae bacterium OX=2030806 GN=ureE P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17092-RACarg17092-RAmRNA