Carg17090 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17090
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Squamosa promoter-binding protein
Location	Carg_Chr09: 4528381 .. 4529363 (-)
RNA-Seq Expression	Carg17090
Synteny	Carg17090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCTCGTTAAGACGTGTATTCTCGATCCGGAGGTAATGGGTTGATACCTCCTTAGTTATAAGAAGAATTATGCAAATCCTCTTTTCGACATTGTGTCATTCACGATGGTTCGATCATCGAAACTGGCACTCACAAAGTTAAAAACTGTGGTCCTCACCACCTTTTTCTTACCCATCTTTTTCCTTGCAGTCTCATAGTCTCTTGATGTAACTTCTAAGTTCCTATATTTTTGCTCCAACCATTTCCACAAGCAGCAGAACCACCACCAACACCACCACCACCACCACGGAGCTGCCGGAGTTGGCAATGGAGGCGAAGAGCTACGAAGGCAAGCATAATCTTAAAGATAAGGCGTACAAGGAAGGTGTGATCGACGACGATTTAGAATATGAGACAGAGGAGGAAGACGTTGGCGGAGGAGGCCATGGTGGTACCAATGCTTGCACTGCATTGGGTTATTACGAGAACGAGAAGAAGAAAAGAGGTACAGCAGTTTCTGGCCGTGGACGATCTGGCAGCGGCGTCTCTTCGCCGAGTTGCCAAGCACACAACTGCACAACAGATTTAAGTGAAGCAAAGAGGTATCACCGCCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCGGCGGTCGTCATGGTCGCAGGAATTCGCCAACGTTTCTGTCAGCAATGCAGCAGGTATTTCATCCTCTTTAACAATATAAACAAGAACACTTCAGTTAACATTCAACCCTCTCTGTTTGGCTAGGTTCCATGAGTTGACAGAATTCGACGACGCTAAAAGGAGCTGTCGTCGGAGGCTAGCAGGGCATAACGAACGACGAAGGAAGAGCTCGGCCGAGTGTCAAGGAGAAAGCACGAACCGTAAAGGATCAGCGTCGCAGTCGAAGGAAGGCCATTGCAGGCAGCTAATGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTACAGGAAGCTCTGGCTATAAACAGCTGCATATCAGA

mRNA sequence

GAGCTCGTTAAGACGTGTATTCTCGATCCGGAGTCTCATAGTCTCTTGATTTCCTATATTTTTGCTCCAACCATTTCCACAAGCAGCAGAACCACCACCAACACCACCACCACCACCACGGAGCTGCCGGAGTTGGCAATGGAGGCGAAGAGCTACGAAGGCAAGCATAATCTTAAAGATAAGGCGTACAAGGAAGGTGTGATCGACGACGATTTAGAATATGAGACAGAGGAGGAAGACGTTGGCGGAGGAGGCCATGGTGGTACCAATGCTTGCACTGCATTGGGTTATTACGAGAACGAGAAGAAGAAAAGAGGTACAGCAGTTTCTGGCCGTGGACGATCTGGCAGCGGCGTCTCTTCGCCGAGTTGCCAAGCACACAACTGCACAACAGATTTAAGTGAAGCAAAGAGGTATCACCGCCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCGGCGGTCGTCATGGTCGCAGGAATTCGCCAACGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTGACAGAATTCGACGACGCTAAAAGGAGCTGTCGTCGGAGGCTAGCAGGGCATAACGAACGACGAAGGAAGAGCTCGGCCGAGTGTCAAGGAGAAAGCACGAACCGTAAAGGATCAGCGTCGCAGTCGAAGGAAGGCCATTGCAGGCAGCTAATGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTACAGGAAGCTCTGGCTATAAACAGCTGCATATCAGA

Coding sequence (CDS)

GAGCTCGTTAAGACGTGTATTCTCGATCCGGAGTCTCATAGTCTCTTGATTTCCTATATTTTTGCTCCAACCATTTCCACAAGCAGCAGAACCACCACCAACACCACCACCACCACCACGGAGCTGCCGGAGTTGGCAATGGAGGCGAAGAGCTACGAAGGCAAGCATAATCTTAAAGATAAGGCGTACAAGGAAGGTGTGATCGACGACGATTTAGAATATGAGACAGAGGAGGAAGACGTTGGCGGAGGAGGCCATGGTGGTACCAATGCTTGCACTGCATTGGGTTATTACGAGAACGAGAAGAAGAAAAGAGGTACAGCAGTTTCTGGCCGTGGACGATCTGGCAGCGGCGTCTCTTCGCCGAGTTGCCAAGCACACAACTGCACAACAGATTTAAGTGAAGCAAAGAGGTATCACCGCCGCCACAAGGTCTGCGAGTTTCACTCGAAGGCGGCGGTCGTCATGGTCGCAGGAATTCGCCAACGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGTTGACAGAATTCGACGACGCTAAAAGGAGCTGTCGTCGGAGGCTAGCAGGGCATAACGAACGACGAAGGAAGAGCTCGGCCGAGTGTCAAGGAGAAAGCACGAACCGTAAAGGATCAGCGTCGCAGTCGAAGGAAGGCCATTGCAGGCAGCTAATGGAAGATCAAAGAAGCAGAATTCAGATGGCTCCTACAGGAAGCTCTGGCTATAAACAGCTGCATATCAGA

Protein sequence

ELVKTCILDPESHSLLISYIFAPTISTSSRTTTNTTTTTTELPELAMEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRGTAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLMEDQRSRIQMAPTGSSGYKQLHIR

Homology

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BLAST of Carg17090 vs. NCBI nr
Match: KAG7024822.1 (Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 485.7 bits (1249), Expect = 2.3e-133
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   ELVKTCILDPESHSLLISYIFAPTISTSSRTTTNTTTTTTELPELAMEAKSYEGKHNLKD 60
           ELVKTCILDPESHSLLISYIFAPTISTSSRTTTNTTTTTTELPELAMEAKSYEGKHNLKD
Sbjct: 1   ELVKTCILDPESHSLLISYIFAPTISTSSRTTTNTTTTTTELPELAMEAKSYEGKHNLKD 60

Query: 61  KAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRGTAVSGRGRSGSGVS 120
           KAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRGTAVSGRGRSGSGVS
Sbjct: 61  KAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRGTAVSGRGRSGSGVS 120

Query: 121 SPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDDA 180
           SPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDDA
Sbjct: 121 SPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDDA 180

Query: 181 KRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLMEDQRSRIQMAPTGSS 240
           KRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLMEDQRSRIQMAPTGSS
Sbjct: 181 KRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLMEDQRSRIQMAPTGSS 240

Query: 241 GYKQLHIR 249
           GYKQLHIR
Sbjct: 241 GYKQLHIR 248

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BLAST of Carg17090 vs. NCBI nr
Match: KAG6591949.1 (Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 401.0 bits (1029), Expect = 7.6e-108
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 106
           MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVG GGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGRGGHGGTNACTALGYYENEKKKRG 60

Query: 107 TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 166
           TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 167 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 226
           QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME
Sbjct: 121 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 180

Query: 227 DQRSRIQMAPTGSSGYKQLHIR 249
           DQRSRIQMAPTGSSGYKQLHIR
Sbjct: 181 DQRSRIQMAPTGSSGYKQLHIR 202

[Close]

BLAST of Carg17090 vs. NCBI nr
Match: XP_022937043.1 (squamosa promoter-binding protein 1-like [Cucurbita moschata])

HSP 1 Score: 399.4 bits (1025), Expect = 2.2e-107
Identity = 199/202 (98.51%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 106
           MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 107 TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 166
           T+VSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 167 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 226
           QCSRFHELTEFD+AKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 180

Query: 227 DQRSRIQMAPTGSSGYKQLHIR 249
           DQRSRIQMAPTGSSGYK LHIR
Sbjct: 181 DQRSRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of Carg17090 vs. NCBI nr
Match: XP_023536105.1 (squamosa promoter-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399.1 bits (1024), Expect = 2.9e-107
Identity = 199/202 (98.51%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 106
           MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 107 TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 166
           TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 167 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 226
           QCSRFHELTEFD+AKRSCRRRLAGHNERRRKSSAECQGESTNRKGS SQSKEGHCRQLME
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME 180

Query: 227 DQRSRIQMAPTGSSGYKQLHIR 249
           DQRSRIQMAPTGSSGYK LHIR
Sbjct: 181 DQRSRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of Carg17090 vs. NCBI nr
Match: XP_022976580.1 (squamosa promoter-binding protein 1-like [Cucurbita maxima])

HSP 1 Score: 389.4 bits (999), Expect = 2.3e-104
Identity = 193/202 (95.54%), Postives = 198/202 (98.02%), Query Frame = 0


Query: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 106
           MEAKSYEGKHNLKDKAY+EGV+DDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYREGVVDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 107 TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 166
           TAVSGRGRSG GVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGVGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 167 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 226
           QCSRFHELTEFD+AKRSCRRRLAGHNERRRK+SAECQGESTNRKG ASQSKEG CRQLME
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAECQGESTNRKGPASQSKEGQCRQLME 180

Query: 227 DQRSRIQMAPTGSSGYKQLHIR 249
           DQR+RIQMAPTGSSGYK LHIR
Sbjct: 181 DQRTRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of Carg17090 vs. ExPASy Swiss-Prot
Match: Q9S7A9 (Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.6e-34
Identity = 91/203 (44.83%), Postives = 120/203 (59.11%), Query Frame = 0


Query: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 106
           ME K  +G+  +K K+Y   ++++D+E +T+EE+  G                     R 
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEEEEVG---------------------RD 60

Query: 107 TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 166
                RG    G S   CQ   CT D+ EAK YHRRHKVCE H+KA+ V ++G+ QRFCQ
Sbjct: 61  RVRGSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQ 120

Query: 167 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 226
           QCSRFH+L EFD+AKRSCRRRLAGHNERRRKSS    GEST  +GS  +   G    +  
Sbjct: 121 QCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSS----GESTYGEGSGRRGINGQV-VMQN 174

Query: 227 DQRSRIQMA-PTGSSGYKQLHIR 249
            +RSR++M  P  +S +K+  IR
Sbjct: 181 QERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of Carg17090 vs. ExPASy Swiss-Prot
Match: Q9S758 (Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.8e-34
Identity = 87/203 (42.86%), Postives = 122/203 (60.10%), Query Frame = 0


Query: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 106
           ME +  + +  LKDKA    ++++++E   + E+  GG               +E K++ 
Sbjct: 1   MEGQRTQRRGYLKDKATVSNLVEEEMENGMDGEEEDGG---------------DEDKRKK 60

Query: 107 TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 166
                RG S   V S  CQ   CT +L+EAK+Y+RRH+VCE H+KA+   VAG+RQRFCQ
Sbjct: 61  VMERVRGPSTDRVPSRLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQ 120

Query: 167 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 226
           QCSRFHEL EFD+AKRSCRRRLAGHNERRRK S +  GE + R+G + Q        +  
Sbjct: 121 QCSRFHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEGSGRRGFSGQ-------LIQT 180

Query: 227 DQRSRI-QMAPTGSSGYKQLHIR 249
            +R+R+ +  P  +S +K+  IR
Sbjct: 181 QERNRVDRKLPMTNSSFKRPQIR 181

[Close]

BLAST of Carg17090 vs. ExPASy Swiss-Prot
Match: Q6Z461 (Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL13 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.3e-33
Identity = 81/147 (55.10%), Postives = 95/147 (64.63%), Query Frame = 0


Query: 82  GGGGHGGTNACTALGYYENEKK-------KRGTAVSGRGRSGSGVSSPSCQAHNCTTDLS 141
           GGGG   ++A  A G   +          +RG   +G G    G   P CQ   C  DLS
Sbjct: 61  GGGGGSSSSAAVAAGASSSSSSSSVAAAARRGAGRAGGGAPSGGGGGPRCQVERCGVDLS 120

Query: 142 EAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNER 201
           EA RY+RRHKVC+ HSK  VV+VAG+RQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNER
Sbjct: 121 EAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNER 180

Query: 202 RRKSSAE-CQGESTNRKG-SASQSKEG 220
           RRKS+A+   GE+       A +S +G
Sbjct: 181 RRKSAADTAHGENCRHADQDAGRSHQG 207

[Close]

BLAST of Carg17090 vs. ExPASy Swiss-Prot
Match: Q38741 (Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.7e-31
Identity = 78/153 (50.98%), Postives = 96/153 (62.75%), Query Frame = 0


Query: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 106
           M+    EGK  +K        +    E   EE+D+G                E+ KK R 
Sbjct: 1   MDTSKGEGKRVIK--------LPGSQEQGEEEDDIG----------------EDSKKTRA 60

Query: 107 TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 166
              SG+  SGS  +  SCQ  NC  +++ AK YHRRHKVCEFH+KA VV+ +G++QRFCQ
Sbjct: 61  LTPSGKRASGS--TQRSCQVENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHSGLQQRFCQ 120

Query: 167 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSS 200
           QCSRFHEL+EFD+AKRSCRRRLAGHNERRRKSS
Sbjct: 121 QCSRFHELSEFDEAKRSCRRRLAGHNERRRKSS 127

[Close]

BLAST of Carg17090 vs. ExPASy Swiss-Prot
Match: P93015 (Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SPL3 PE=1 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 2.3e-30
Identity = 76/157 (48.41%), Postives = 101/157 (64.33%), Query Frame = 0


Query: 45  LAMEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKK 104
           ++M     EGK +L++ + +E     + E ETE+ED            T       EKK+
Sbjct: 1   MSMRRSKAEGKRSLRELSEEE-----EEEEETEDED------------TFEEEEALEKKQ 60

Query: 105 RGTAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRF 164
           +G A S         SS  CQ  +CT D+S+AK+YH+RHKVC+FH+KA  V ++G+ QRF
Sbjct: 61  KGKATS---------SSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRF 120

Query: 165 CQQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAE 202
           CQQCSRFH L+EFD+AKRSCRRRLAGHNERRRKS+ +
Sbjct: 121 CQQCSRFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

[Close]

BLAST of Carg17090 vs. ExPASy TrEMBL
Match: A0A6J1FEY0 (squamosa promoter-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111443461 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 1.1e-107
Identity = 199/202 (98.51%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 106
           MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 107 TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 166
           T+VSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 167 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 226
           QCSRFHELTEFD+AKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 180

Query: 227 DQRSRIQMAPTGSSGYKQLHIR 249
           DQRSRIQMAPTGSSGYK LHIR
Sbjct: 181 DQRSRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of Carg17090 vs. ExPASy TrEMBL
Match: A0A6J1IJV6 (squamosa promoter-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111476934 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 1.1e-104
Identity = 193/202 (95.54%), Postives = 198/202 (98.02%), Query Frame = 0


Query: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 106
           MEAKSYEGKHNLKDKAY+EGV+DDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG
Sbjct: 1   MEAKSYEGKHNLKDKAYREGVVDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 107 TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 166
           TAVSGRGRSG GVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGVGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 167 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 226
           QCSRFHELTEFD+AKRSCRRRLAGHNERRRK+SAECQGESTNRKG ASQSKEG CRQLME
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAECQGESTNRKGPASQSKEGQCRQLME 180

Query: 227 DQRSRIQMAPTGSSGYKQLHIR 249
           DQR+RIQMAPTGSSGYK LHIR
Sbjct: 181 DQRTRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of Carg17090 vs. ExPASy TrEMBL
Match: A0A0A0L3D9 (Squamosa promoter-binding protein OS=Cucumis sativus OX=3659 GN=Csa_4G631590 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 4.7e-87
Identity = 170/206 (82.52%), Postives = 183/206 (88.83%), Query Frame = 0


Query: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGG--TNACTALGYYENEKKK 106
           M+AKS+EGKHN KDK     V+DDD EYETEEE+VGGGG GG  +NAC ALGY++NEKKK
Sbjct: 1   MDAKSFEGKHNFKDKT----VVDDDFEYETEEEEVGGGGGGGSNSNACNALGYFDNEKKK 60

Query: 107 RGTAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRF 166
           RG AVSGRG+SG  VS PSCQAHNC  DLSEAKRYHRRHKVCEFHSKAA+VMVAGIRQRF
Sbjct: 61  RGAAVSGRGKSGGSVSLPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRF 120

Query: 167 CQQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSA--SQSKEGHCR 226
           CQQCSRFHELTEFD+AKRSCRRRLAGHNERRRKSSAE QGEST+RKGSA  +QSKE HCR
Sbjct: 121 CQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAESQGESTSRKGSAPQAQSKESHCR 180

Query: 227 QLMEDQRSRIQMAPTGSSGYKQLHIR 249
           QL+EDQRSRIQMAP GSSGYK LHIR
Sbjct: 181 QLVEDQRSRIQMAPPGSSGYKHLHIR 202

[Close]

BLAST of Carg17090 vs. ExPASy TrEMBL
Match: A0A5D3DWS3 (Squamosa promoter-binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001760 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 9.7e-85
Identity = 165/204 (80.88%), Postives = 181/204 (88.73%), Query Frame = 0


Query: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHG-GTNACTALGYYENEKKKR 106
           M+AKS+EGKHN KDK     V+DDD EYETEEE+VGGGG G  +NAC ALGY++NEK+KR
Sbjct: 1   MDAKSFEGKHNSKDKT----VVDDDFEYETEEEEVGGGGGGSNSNACNALGYFDNEKRKR 60

Query: 107 GTAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFC 166
           G AVSGRG+SG  VSSPSCQAHNC  DLSEAKRYHRRHKVCEFHSKAA+VMVAGIRQRFC
Sbjct: 61  GAAVSGRGKSGGSVSSPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRFC 120

Query: 167 QQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGS-ASQSKEGHCRQL 226
           QQCSRFHELTEFD+AKRSCRRRLAGHNERRRK+SAE QGEST+RK +  +QSKE HCRQL
Sbjct: 121 QQCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAESQGESTSRKSAPQAQSKESHCRQL 180

Query: 227 MEDQRSRIQMAPTGSSGYKQLHIR 249
           +EDQRSRIQMAP GSSGYK LHIR
Sbjct: 181 VEDQRSRIQMAPPGSSGYKHLHIR 200

[Close]

BLAST of Carg17090 vs. ExPASy TrEMBL
Match: A0A1S4E4C7 (squamosa promoter-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501851 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 7.0e-75
Identity = 153/203 (75.37%), Postives = 168/203 (82.76%), Query Frame = 0


Query: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 106
           M+AKS+EGKHN KDK     V+DDD EYETEEE+VGGGG                +K++G
Sbjct: 1   MDAKSFEGKHNSKDKT----VVDDDFEYETEEEEVGGGG---------------GEKEKG 60

Query: 107 TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 166
            AVSGRG+SG  VSSPSCQAHNC  DLSEAKRYHRRHKVCEFHSKAA+VMVAGIRQRFCQ
Sbjct: 61  AAVSGRGKSGGSVSSPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRFCQ 120

Query: 167 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGS-ASQSKEGHCRQLM 226
           QCSRFHELTEFD+AKRSCRRRLAGHNERRRK+SAE QGEST+RK +  +QSKE HCRQL+
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAESQGESTSRKSAPQAQSKESHCRQLV 180

Query: 227 EDQRSRIQMAPTGSSGYKQLHIR 249
           EDQRSRIQMAP GSSGYK LHIR
Sbjct: 181 EDQRSRIQMAPPGSSGYKHLHIR 184

[Close]

BLAST of Carg17090 vs. TAIR 10
Match: AT1G53160.2 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-35
Identity = 91/203 (44.83%), Postives = 120/203 (59.11%), Query Frame = 0


Query: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 106
           ME K  +G+  +K K+Y   ++++D+E +T+EE+  G                     R 
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEEEEVG---------------------RD 60

Query: 107 TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 166
                RG    G S   CQ   CT D+ EAK YHRRHKVCE H+KA+ V ++G+ QRFCQ
Sbjct: 61  RVRGSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQ 120

Query: 167 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 226
           QCSRFH+L EFD+AKRSCRRRLAGHNERRRKSS    GEST  +GS  +   G    +  
Sbjct: 121 QCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSS----GESTYGEGSGRRGINGQV-VMQN 174

Query: 227 DQRSRIQMA-PTGSSGYKQLHIR 249
            +RSR++M  P  +S +K+  IR
Sbjct: 181 QERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of Carg17090 vs. TAIR 10
Match: AT1G53160.1 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-35
Identity = 91/203 (44.83%), Postives = 120/203 (59.11%), Query Frame = 0


Query: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 106
           ME K  +G+  +K K+Y   ++++D+E +T+EE+  G                     R 
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEEEEVG---------------------RD 60

Query: 107 TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 166
                RG    G S   CQ   CT D+ EAK YHRRHKVCE H+KA+ V ++G+ QRFCQ
Sbjct: 61  RVRGSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQ 120

Query: 167 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 226
           QCSRFH+L EFD+AKRSCRRRLAGHNERRRKSS    GEST  +GS  +   G    +  
Sbjct: 121 QCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSS----GESTYGEGSGRRGINGQV-VMQN 174

Query: 227 DQRSRIQMA-PTGSSGYKQLHIR 249
            +RSR++M  P  +S +K+  IR
Sbjct: 181 QERSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of Carg17090 vs. TAIR 10
Match: AT3G15270.1 (squamosa promoter binding protein-like 5 )

HSP 1 Score: 146.0 bits (367), Expect = 4.1e-35
Identity = 87/203 (42.86%), Postives = 122/203 (60.10%), Query Frame = 0


Query: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 106
           ME +  + +  LKDKA    ++++++E   + E+  GG               +E K++ 
Sbjct: 1   MEGQRTQRRGYLKDKATVSNLVEEEMENGMDGEEEDGG---------------DEDKRKK 60

Query: 107 TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 166
                RG S   V S  CQ   CT +L+EAK+Y+RRH+VCE H+KA+   VAG+RQRFCQ
Sbjct: 61  VMERVRGPSTDRVPSRLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQ 120

Query: 167 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 226
           QCSRFHEL EFD+AKRSCRRRLAGHNERRRK S +  GE + R+G + Q        +  
Sbjct: 121 QCSRFHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEGSGRRGFSGQ-------LIQT 180

Query: 227 DQRSRI-QMAPTGSSGYKQLHIR 249
            +R+R+ +  P  +S +K+  IR
Sbjct: 181 QERNRVDRKLPMTNSSFKRPQIR 181

[Close]

BLAST of Carg17090 vs. TAIR 10
Match: AT2G33810.1 (squamosa promoter binding protein-like 3 )

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-31
Identity = 76/157 (48.41%), Postives = 101/157 (64.33%), Query Frame = 0


Query: 45  LAMEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKK 104
           ++M     EGK +L++ + +E     + E ETE+ED            T       EKK+
Sbjct: 1   MSMRRSKAEGKRSLRELSEEE-----EEEEETEDED------------TFEEEEALEKKQ 60

Query: 105 RGTAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRF 164
           +G A S         SS  CQ  +CT D+S+AK+YH+RHKVC+FH+KA  V ++G+ QRF
Sbjct: 61  KGKATS---------SSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRF 120

Query: 165 CQQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAE 202
           CQQCSRFH L+EFD+AKRSCRRRLAGHNERRRKS+ +
Sbjct: 121 CQQCSRFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

[Close]

BLAST of Carg17090 vs. TAIR 10
Match: AT1G69170.1 (Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein )

HSP 1 Score: 124.8 bits (312), Expect = 9.8e-29
Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 95  LGYYENEKKKRGTAVSGRGRSGSGVSS--PSCQAHNCTTDLSEAKRYHRRHKVCEFHSKA 154
           LG  +++   RG A+  +    S + S  P CQ + C+ DLS +K YH+RH+VCE HSK 
Sbjct: 93  LGNDDDDTSSRGFALPSKKSRASNLCSQNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKT 152

Query: 155 AVVMVAGIRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNERRRK 198
           +VV+V G+ QRFCQQCSRFH L+EFDD KRSCRRRLAGHNERRRK
Sbjct: 153 SVVIVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRK 197

The following BLAST results are available for this feature:

BLAST of Carg17090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024822.1	2.3e-133	100.00	Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp....	[more]
KAG6591949.1	7.6e-108	99.50	Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp....	[more]
XP_022937043.1	2.2e-107	98.51	squamosa promoter-binding protein 1-like [Cucurbita moschata]	[more]
XP_023536105.1	2.9e-107	98.51	squamosa promoter-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022976580.1	2.3e-104	95.54	squamosa promoter-binding protein 1-like [Cucurbita maxima]	[more]

BLAST of Carg17090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7A9	2.6e-34	44.83	Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4...	[more]
Q9S758	5.8e-34	42.86	Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5...	[more]
Q6Z461	8.3e-33	55.10	Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q38741	2.7e-31	50.98	Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV...	[more]
P93015	2.3e-30	48.41	Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SPL3...	[more]

BLAST of Carg17090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEY0	1.1e-107	98.51	squamosa promoter-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1IJV6	1.1e-104	95.54	squamosa promoter-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A0A0L3D9	4.7e-87	82.52	Squamosa promoter-binding protein OS=Cucumis sativus OX=3659 GN=Csa_4G631590 PE=...	[more]
A0A5D3DWS3	9.7e-85	80.88	Squamosa promoter-binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S4E4C7	7.0e-75	75.37	squamosa promoter-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501851...	[more]

BLAST of Carg17090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53160.2	1.8e-35	44.83	squamosa promoter binding protein-like 4	[more]
AT1G53160.1	1.8e-35	44.83	squamosa promoter binding protein-like 4	[more]
AT3G15270.1	4.1e-35	42.86	squamosa promoter binding protein-like 5	[more]
AT2G33810.1	1.6e-31	48.41	squamosa promoter binding protein-like 3	[more]
AT1G69170.1	9.8e-29	59.05	Squamosa promoter-binding protein-like (SBP domain) transcription factor family ...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036893	SBP domain superfamily	GENE3D	4.10.1100.10		coord: 114..185 e-value: 2.2E-32 score: 113.0
IPR036893	SBP domain superfamily	SUPERFAMILY	103612	SBT domain	coord: 122..201
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 124..197 e-value: 2.6E-31 score: 107.8
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 121..198 score: 32.0602
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..248
None	No IPR available	PANTHER	PTHR31251:SF149	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN	coord: 57..248
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 57..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17090-RA	Carg17090-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding