Carg17037 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17037
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 4250416 .. 4256905 (-)
RNA-Seq ExpressionCarg17037
SyntenyCarg17037
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCTTTCTGATTGGGCTATTTTTCACCATCCATCGAGAGCCAGAGGGCGAAGAACAAAACATGGCAACGCTTTACCAAGATGCCGAAGCTTGGAACGCAGTAAGCCGTTTCCGGAGGCTATCAAATGTCCAATCCATGGCGTCGGTAAGAAACTCCTTATTGTTGATTTCGGATTGAATTGCATGAGAGCCACGATTCATTGTAGAGACAGCTATGGAATTGTTTACGAGCATGAACTTAGGTGATTTCTCAGAAATCTGTTCAGGTGTAATCGTATTGTGTGCTTTGAATTTGTGGTGGTCGTTCGTATTGTTTTACTTTGTTAGTCGTAAGCTGCCGCTCTCGGAGGCGCTGTGGCTAACCATTTCGAGATTTGGAACTGTCTGTCTGATGATCCTCGCCTTGGTTCTGGCAGAGTACTGTTCTTGACTACGACGAAGATGATAATGCCACTTCGCCTACCATCTCTGTGATGGCAAGTTGTTGCATGTGATTGATCATTTGCCTATCTATAATTTTTGTGATTTTTCCGTTTTGATGTTCGGCGGACAAATGTGAGGTCTACTTGCGGCAAGAATCTTCCCGCGAGAAAAATGCGAGTGGTGGATTCGGATTTTCGACCGAAGAACCTGGAATCTACACGGCCTGTTTCGCGGAAGATGGCGGCAACCGCGACGGAGAGGAGAGCAGCTCCCATGATATAAATAGCCTCGGTATTCTCGTTTATATTAAAACTAATAATAATAAGAATAAAGAACAATAATAAGTCTAAAAATGGAAATTACATTTTGGAAAGCCATTTTTCTCAGCAGCTGGGGGATTCAAAATCGAAAGAATCCAATTCCAATTTCCAATCTCCGGCAACGCGAGATTCACCTGTAAGAATGATATCTATAGCCGCTATGATAGTCACTCGACCTTCTTCTTCATAATTACTGCTCAAAGCGCAAACAGCCCGTCGGATTTTGACTCCTTCGGCTTCATCATCGCAAACTGATTCTTTACTTGAAGCCCGGATGCTGTTTGTGCGATGGTCTCAAAGAAAAACTGCAAGCCGCCTATCTGATCGCCGGCTCCGATTCTCTCCACGATGTTGGTTTGCAGGCACTCACTTCACAGCCCCCTTTCATTGTATTTGTCGTTCCTTTACTGTTGTAAGCGCTTTAATTTGATATGTGATGTTTATTTTCAAGTAGGTGAGGGATATCACTACTAACCCAGAATGGGAGAGAGCTGACCAGTATGGGATTCCCGTGCTCGCGAAAGTGCTCTCCAATGGCTCGGAGGTTGGTTATATTCATTCATTCTTGTGATTCTGATAAGTAAGAACATGTATTTTGGTTGTTTTAGCTTATTTGGAAGGAGTGTATCGATTTCAGATTTGCGGAGCTCTTCCCGGGGCTTCTAATCTAGAATTGTGCTTATGGATTTATAAAATGATCAAATGTTTGTGCACTGCTTGTTTTCGTCCCCTGCTTGTTTTTAAATCCTTGGCTGGTGTTGTAGTGAAATTCTATTTTCCAGGCACTAGATTAGTAACCCCTTGTTCTTGCATTTAACGTTGGAGTTTGAGGTTCCAATGAGTTGTTCACCTCGTCTTCTGTCCTCATTTAAGTTATTGATGACTATAATTATGAATCCTGTTGGGTCTGTGATTAATCCAACAAGGAAGGCTTTTATCAATGTATTGATAACTGTGTTCCATCTGCTTGATTCAAGTACTTTCGTCCTATTTTTTGTAATTTGTTTATCGACTGTTATAAGTATTTTGTTTCCTTGGTTTGTCTCTTCCTATTCTTTCTTGCCATAGCATACAGTATAATGTGGAAATAAGCCAGTAATAGAGTGTCTAAAGTCATATTAAGTGAAGGAAGATAAAAAAAATAATAATAAAAATAAAAAGGAAATAGAAAACCTTGCAATCTAGGATTCTGAACCACTGAATAGTTCATTTCTTCAATTAAGATTTGATATGCTATGTATCCTGACCTTATCTACATAGAAGGCTTCCTCTAAAAATACGTTTCTTTGGTGTCTGAAACTGAGACAGTCCGCGTTGGTTGTCTTACTGCATTTTAGGAATCAGTATGGGATACAATAGCGTTTAAATCTTAATATACTTGTCCTGTTTTATCAAAGAAACCTACTGATTCAATATGACATGCAACAAAAGAAGTCTTCTGGGGATGGCTTTCAGCTCACTTGGATCTATCCATAATAACATCCCTGATAAACATTTATTGAATGCCAGTGAATCAAAAGGGCTTTACCGATGATGGCTTGTTGAAAGGATGATAACGTTTGAATGAACTCGATAGATTTGCACGTTTTTGTAGATCTTATGAATATTCTAAATTACCTGACATCTTGAACTAAGGGATTGGGCTGTTAATATTAATACTATATTGTTAAACATGGAGAGGCCTATTCCAATTGAAACTCCTGTGTGGAAAAGATAGACCTGAAGCAGAAGCCTCTTATACTATCAAAGTTGCACATGGTTACTTCTACTTCCATTTCCTGTGCTTAAATGTTCTGTAAACTAAGCTCACTAGACCTACACCTTCCTGGAACTCTTTGTATGAACGAATGGGATATGGGTTTCTTTCTTAGAGAGGAAAATATGAAACAAATAAGCTATTGGGAGGGTTTTACTGTGAACTGTCAAAATCAAAATGACGAACAAGGTGGCTATATGGCAAAGAAAAACACAATTAATATGAAGATGCAAGTAACATAGAGATCCATACATTCTAAATATTCTCTCATATTAGTTTCATCACTCTGTTAGTAGCAAGTTAGCATTTGGAAAGCTCTAAGTAGTGAATTTATCTCTCTCCTTAATCACCCCTCAACCTACGGAGGAGTGTGGGTGAAATTGAGTTTGTCGCCTAAGTGGCATCTATAAAGAAAATAAAGCAAAGATAATTTGACACAAACTGTTGAACTATTCTTTTTTGTTTTTGCTGGGATGCGAAAACTTAAAAACCCTCCTTTCGAGCATGGGGAGTACCCGACTGAGGAGGTGCATTACCCATGTTCAATTATTCTCGTACAACTCTTTTCTAGTTTGACTGAGAGGAAATTGTTGCAAAATAGGTGTCACTTAGAGGTTTTGCCTTTTGATTGAAAAGAATAAGAGGAAAGGGCTATTATCACAAAAATCAGTTACCAAAGAAGATGAGAGATCTCCCTATAAATCAAGTAACTTACAAATATGCATCTCGATTGGCATGAATCAAAGGAAAGGCTATAATCACAAAGGTTATAACTCTGCAATTTTTGAAAGTATTTCAGCAGTCCATTTACATTATGCCATCATGAGGATACTTCAATGGTTAAGACATTTCTACTTCCTTGAAGAAGTTATAGGTTCAAATCTCCACCTCCAGCTGCGTTGTAATATCGCCAATACAGTTATTAAAAGTGGGAAATATTAGTGTACTTATTTAAAGAACACTATCACTTTTTAAGACCTTTTAAGTTCAAAATTCTTCAAGCCAGATGGAGTATGCCTTTTGTTTTTCCTGACGAGGTAGCTTGATATGGGGTGTTGGTACATTTATAACCTTATTCTTTCTTCTCCCAAATTGTATGACGAATATCTCACTTACTTTACTATGTTCACTTTATCTTTCCTTTTCCTTTTACTAAGGGGGGAGTTGAAAAGTAGTTTTTATTTTACTTTATTTACAGTAATAATTTTTCATCTGATATTTTTTTATAATATACTGACTTGGATAGTTATTGTTTATTCTGATACTTGTTCCTGGTCAGATTTTGAGAAAATAAATTAAACAATCTTGCAATCCCAGAAAATAAATAACTATGCAGTGTGGTTCTTGAAATTATATATTCTATAATTGAATTCGACTACTGCACGTTCTTGTGGGATATGTTTGATTATAAGATGTTGTATCTGGACAAATGTTCATTTTTTCTTTTAGTTTTTGTGTATTCCTGCAGACTTACATATGCCGTGCTTCTGTTTACTTAGGTTCAATGTCTTCATCTTTTTCTGCCTTCTTTTGGACTCTCTTTATATGATGCCTTACACGATTTGAGTTTGTGTTGATAGTTTAGTTTAATTTTCTTTCTCCATCTTAACGTCATTCCAAACTTTATGAACATTTTCCATCATTAGATTATTCAGTGGATACATTGTCTTTTCTTGAAGTTCCTGTAAAATTTGTTTCAATTACTTTATGGATGTTATGTAGCCTGAAAATTTTCATAGTTTAGACAACCTACCTACTTAAAGTAATCATGTGATTAGCTTCACACATGCTTATCTACAAAAGCTTCTCTTTTAAATGATAGCATTCGAGATTACCATTCCTTTGATGTTTGACCTCTAACCCTCAAAAGTAGTTAGATTTCTTGTACTTGCTAATATCCCACGTGTGATAGCTGCAGATTTATAGATCTAGGTCATCTGTTTTTCTGTAATTTACTAAACCAGTCGCGTATCGTGTATTTCTAGTATCTCGTAAGAGATAGCAGCAGAGTTAGAAATCTAGGTCAGGTGTATTAATTGTACTATACACCTTTATGTATGTTGTGTTATACACTGGTTTTATTATTTAATAGAGTTCAGGATAAACAAATGTTTATATTTTATATGTAGAAAACTGTTCTCCTTTTTACTAGATACCGAGTAATATTCTCAATTATTCCATTTGGGTTACTTGGCATTAGAGATATCCAGATGTATGTAGAGTTTATCTATCTTTATTTGCTTTTTTTTTCTTTTTGTCTTCCATTTCTATCTCAAGTAGTCCTTTTCAGATAATACTTAGTTACGCAGACGGCAAGTTAGCTTATTAATCTGGTTTCTATGATTTTTGTTCATTGCTCTCTTATATTTTGGGGTCAGGAGATTTCCTTATGTTGTGTACTGTTTCCTGATGTCATGAACTAATATGCACTAGAAACACAAAAGCAATTGCAGACAATTGCTGATCCTGACTCATTGCTCACTGATGGATGTGGATTCCATTTTTTGTATTATTGTTCATCTTTTGGCCCAATTTTCATTCAAGGAAGCTTGCTTTCAATTGATGGTATTCTCTTTAACACCAGTGCGACGTGTCAATTGAAGAAAATTGATGCAATATTTGTGTTCGAAAGTTCTTCTTAGACTCTGGAGATATACTGTCCTTTCATCTTTCCTTTTCCTCTCTTTTGGGTGCTTTTGCTTGGCTGAACATTTTTTAGTAATGCTACACACATTGCTTCCCTTTTTCATGTGCAATTCAATTATTCTTGAATCTGAAATTCATAGAGAAACTTTAGACACTTGTTATTGAAATTCTGATCTCCACAGGCTGTAATGTAATAGAAAAAGAAGAGTTAAATAAATACTTTATTCCATCAACTTGAGATTAAAAAAAAAAAAACAAGGACCATTGATGCATCGTGTGGCTTCTTTTCTTCACCAAAAGAAATTTATGTCGCTTTCACTTTCTAATATACCATGTTTGACCTGTTTCTCTTTGCATGAAATTATTGACCATCATTATCATAATGTGTTCAAATACGCCATCGATTCCCACTCTTTCTTTCTTTCTTTCATTTATTTTTCTTTTAGTGAAAGTGAAAAGTCGTCCATTTATGCTTCAGAAAGGGTTTGCAAAAGAAGGTAGAAGGCCGTGGAGGGGAAAAAGGGCAGAAAAGTAGAGATTTTGACCTGGTCAAAAGTTGCAAACATGAACAAACACAACATTCATTTGAAGGTTTTGTAGGTTTCTTATCTCCACATGATTACCAGAGTTCCAAACTTGTAAGTTAACTCAATCTCTTCTGGGTTCATTGCAAAAACCTCTCTTTTTGTTATAATTGATCTGTTCTTATATTGTGACAGCTCAAAAAAGAAAAGGCCATGATAGTTCTGTTCATGAAGGGGAGGATCATTCATTTACCCGACTTCCCCGGCCGACCACGCCATCCGTTTTGGTAAACCTCAAATTTAACTGTTAGATTCTGTTTGTTCTTTATGATTGCTTGATTGATGATTCTGAATCTCCCAATGGCAAATGAATCTCCTGTACTCTTTTTGAAATCTGATTCAAGATTTACCTTGCCACACTCAAGCTAGGCTGTTTTGCTTTCCTCCTTTATTGCTCCTCTGACTGGCTTTACCGTGTCAATCAATCACCAAACACTTGCTGCCAAAACAAAGGCGCTTTTTGCTTTCTTTCTTTTGGGTGTATTGCAATGACAAGGTTTAGTTTGATTTCTTTTGTAACTGCCCAAGCCGGCACTATCAGTAGATATTATCCTCAAGGTTTTTAAAATGCGTCTGTTAGGGGAAGTTTCCATACCTTTATAAGGAATGCTTTGTTCTCCTCTTCAGTTGTTGTGTGATCTCACAATTGACCTACTTAAAGAGCCCAGCATCCTCGCTCGCACTCGTTCCTCTCTCAAATCGATGTGAGATCTCACAATCCACCTCACTTTAAGGTCCAATGTCCTTGCTGGCACTCGTTTC

mRNA sequence

ACCTTTCTGATTGGGCTATTTTTCACCATCCATCGAGAGCCAGAGGGCGAAGAACAAAACATGGCAACGCTTTACCAAGATGCCGAAGCTTGGAACGCAGTAAGCCGTTTCCGGAGGCTATCAAATGTCCAATCCATGGCGTCGAGTACTGTTCTTGACTACGACGAAGATGATAATGCCACTTCGCCTACCATCTCTGTGATGGCAAGTTGTTGCATGTGATTGATCATTTGCCTATCTATAATTTTTGTGATTTTTCCGTTTTGATGTTCGGCGGACAAATGTGAGGTCTACTTGCGGCAAGAATCTTCCCGCGAGAAAAATGCGAGTGGTGGATTCGGATTTTCGACCGAAGAACCTGGAATCTACACGGCCTGTTTCGCGGAAGATGGCGGCAACCGCGACGGAGAGGAGAGCAGCTCCCATGATATAAATAGCCTCGGTATTCTCGTTTATATTAAAACTAATAATAATAAGAATAAAGAACAATAATAAGTCTAAAAATGGAAATTACATTTTGGAAAGCCATTTTTCTCAGCAGCTGGGGGATTCAAAATCGAAAGAATCCAATTCCAATTTCCAATCTCCGGCAACGCGAGATTCACCTGTAAGAATGATATCTATAGCCGCTATGATAGTCACTCGACCTTCTTCTTCATAATTACTGCTCAAAGCGCAAACAGCCCGTCGGATTTTGACTCCTTCGGCTTCATCATCGCAAACTGATTCTTTACTTGAAGCCCGGATGCTGTTTGTGCGATGGTCTCAAAGAAAAACTGCAAGCCGCCTATCTGATCGCCGGCTCCGATTCTCTCCACGATGTTGGTTTGCAGGTGAGGGATATCACTACTAACCCAGAATGGGAGAGAGCTGACCAGTATGGGATTCCCGTGCTCGCGAAAGTGCTCTCCAATGGCTCGGAGAAAGGGTTTGCAAAAGAAGGTAGAAGGCCGTGGAGGGGAAAAAGGGCAGAAAAGTAGAGATTTTGACCTGGTCAAAAGTTGCAAACATGAACAAACACAACATTCATTTGAAGGTTTTGTAGGTTTCTTATCTCCACATGATTACCAGAGTTCCAAACTTCTCAAAAAAGAAAAGGCCATGATAGTTCTGTTCATGAAGGGGAGGATCATTCATTTACCCGACTTCCCCGGCCGACCACGCCATCCGTTTTGGTAAACCTCAAATTTAACTGTTAGATTCTGTTTGTTCTTTATGATTGCTTGATTGATGATTCTGAATCTCCCAATGGCAAATGAATCTCCTGTACTCTTTTTGAAATCTGATTCAAGATTTACCTTGCCACACTCAAGCTAGGCTGTTTTGCTTTCCTCCTTTATTGCTCCTCTGACTGGCTTTACCGTGTCAATCAATCACCAAACACTTGCTGCCAAAACAAAGGCGCTTTTTGCTTTCTTTCTTTTGGGTGTATTGCAATGACAAGGTTTAGTTTGATTTCTTTTGTAACTGCCCAAGCCGGCACTATCAGTAGATATTATCCTCAAGGTTTTTAAAATGCGTCTGTTAGGGGAAGTTTCCATACCTTTATAAGGAATGCTTTGTTCTCCTCTTCAGTTGTTGTGTGATCTCACAATTGACCTACTTAAAGAGCCCAGCATCCTCGCTCGCACTCGTTCCTCTCTCAAATCGATGTGAGATCTCACAATCCACCTCACTTTAAGGTCCAATGTCCTTGCTGGCACTCGTTTC

Coding sequence (CDS)

ACCTTTCTGATTGGGCTATTTTTCACCATCCATCGAGAGCCAGAGGGCGAAGAACAAAACATGGCAACGCTTTACCAAGATGCCGAAGCTTGGAACGCAGTAAGCCGTTTCCGGAGGCTATCAAATGTCCAATCCATGGCGTCGAGTACTGTTCTTGACTACGACGAAGATGATAATGCCACTTCGCCTACCATCTCTGTGATGGCAAGTTGTTGCATGTGA

Protein sequence

TFLIGLFFTIHREPEGEEQNMATLYQDAEAWNAVSRFRRLSNVQSMASSTVLDYDEDDNATSPTISVMASCCM
Homology
[Close]
BLAST of Carg17037 vs. NCBI nr
Match: KAG7024772.1 (hypothetical protein SDJN02_13590, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  TFLIGLFFTIHREPEGEEQNMATLYQDAEAWNAVSRFRRLSNVQSMASSTVLDYDEDDNA 60
          TFLIGLFFTIHREPEGEEQNMATLYQDAEAWNAVSRFRRLSNVQSMASSTVLDYDEDDNA
Sbjct: 1  TFLIGLFFTIHREPEGEEQNMATLYQDAEAWNAVSRFRRLSNVQSMASSTVLDYDEDDNA 60

Query: 61 TSPTISVMASCCM 74
          TSPTISVMASCCM
Sbjct: 61 TSPTISVMASCCM 73

[Close]
BLAST of Carg17037 vs. NCBI nr
Match: KAG6591898.1 (hypothetical protein SDJN03_14244, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.1 bits (240), Expect = 6.9e-17
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 21 MATLYQDAEAWNAVSRFRRLSNVQSMASSTVLDYDEDDNATSPTISVMA 70
          MATLYQDAEAWNAVSRFRRLSNVQSMASSTVLDYDEDDNATSPTISVMA
Sbjct: 1  MATLYQDAEAWNAVSRFRRLSNVQSMASSTVLDYDEDDNATSPTISVMA 49

The following BLAST results are available for this feature:
BLAST of Carg17037 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024772.11.5e-32100.00hypothetical protein SDJN02_13590, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6591898.16.9e-17100.00hypothetical protein SDJN03_14244, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg17037 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17037 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17037 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17037-RACarg17037-RAmRNA