Carg17029 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17029
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Acetyltransferase
Location	Carg_Chr09: 4220385 .. 4220678 (+)
RNA-Seq Expression	Carg17029
Synteny	Carg17029

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTCCAAACCCTATAGCAGGATCTGGAACCAACCCTCCAAAGATAATCTGGAATGATGCCCAACGGAGGTTCGAAACAGAGGACAAGAAGGCATATCTTCAGTACGTCATCAAAAATCAAGGTAAAGTCATCGATATGATTCACACTTTCGTTCCTTCTTCCAAAAGGGGTTTGGGATTGGCTTCTCATCTCTGCGCCGCCGCCTTCAATCACGCCGCCGCTCATTCCTTGGCCGTCGTTCCCTCCTGTTCTTACATTTCCGTGAGTTCTCTTCTCTGCAACTTCTAG

mRNA sequence

ATGGCGACTCCAAACCCTATAGCAGGATCTGGAACCAACCCTCCAAAGATAATCTGGAATGATGCCCAACGGAGGTTCGAAACAGAGGACAAGAAGGCATATCTTCAGTACGTCATCAAAAATCAAGGTAAAGTCATCGATATGATTCACACTTTCGTTCCTTCTTCCAAAAGGGGTTTGGGATTGGCTTCTCATCTCTGCGCCGCCGCCTTCAATCACGCCGCCGCTCATTCCTTGGCCGTCGTTCCCTCCTGTTCTTACATTTCCGTGAGTTCTCTTCTCTGCAACTTCTAG

Coding sequence (CDS)

ATGGCGACTCCAAACCCTATAGCAGGATCTGGAACCAACCCTCCAAAGATAATCTGGAATGATGCCCAACGGAGGTTCGAAACAGAGGACAAGAAGGCATATCTTCAGTACGTCATCAAAAATCAAGGTAAAGTCATCGATATGATTCACACTTTCGTTCCTTCTTCCAAAAGGGGTTTGGGATTGGCTTCTCATCTCTGCGCCGCCGCCTTCAATCACGCCGCCGCTCATTCCTTGGCCGTCGTTCCCTCCTGTTCTTACATTTCCGTGAGTTCTCTTCTCTGCAACTTCTAG

Protein sequence

MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGLGLASHLCAAAFNHAAAHSLAVVPSCSYISVSSLLCNF

Homology

[Close]

BLAST of Carg17029 vs. NCBI nr
Match: KAG7024765.1 (Acetyltransferase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.2 bits (500), Expect = 6.5e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60
          MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL
Sbjct: 1  MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60

Query: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYISVSSLLCNF 98
          GLASHLCAAAFNHAAAHSLAVVPSCSYISVSSLLCNF
Sbjct: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYISVSSLLCNF 97

[Close]

BLAST of Carg17029 vs. NCBI nr
Match: XP_022937145.1 (acetyltransferase At1g77540-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 182.2 bits (461), Expect = 2.2e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60
          MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL
Sbjct: 1  MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60

Query: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 90
          GLASHLCAAAFNHAAAHSLAVVPSCSYIS
Sbjct: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 89

[Close]

BLAST of Carg17029 vs. NCBI nr
Match: KAG6591893.1 (Acetyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182.2 bits (461), Expect = 2.2e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60
          MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL
Sbjct: 1  MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60

Query: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 90
          GLASHLCAAAFNHAAAHSLAVVPSCSYIS
Sbjct: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 89

[Close]

BLAST of Carg17029 vs. NCBI nr
Match: XP_022937144.1 (acetyltransferase At1g77540-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 182.2 bits (461), Expect = 2.2e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60
          MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL
Sbjct: 1  MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60

Query: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 90
          GLASHLCAAAFNHAAAHSLAVVPSCSYIS
Sbjct: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 89

[Close]

BLAST of Carg17029 vs. NCBI nr
Match: XP_023536547.1 (acetyltransferase At1g77540-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.6 bits (457), Expect = 6.3e-42
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60
          MATPNPIAGSGTNPPKIIWN+AQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL
Sbjct: 1  MATPNPIAGSGTNPPKIIWNEAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60

Query: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 90
          GLASHLCAAAFNHAAAHSLAVVPSCSYIS
Sbjct: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 89

[Close]

BLAST of Carg17029 vs. ExPASy Swiss-Prot
Match: Q9CAQ2 (Acetyltransferase At1g77540 OS=Arabidopsis thaliana OX=3702 GN=At1g77540 PE=1 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 9.2e-28
Identity = 51/82 (62.20%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 8  AGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGLGLASHLC 67
          A   T PPKI+WN+ +RRFETED +A+++Y ++N GKV+D++HT+VPS KRGLGLASHLC
Sbjct: 10 AKMATEPPKIVWNEGKRRFETEDHEAFIEYKMRNNGKVMDLVHTYVPSFKRGLGLASHLC 69

Query: 68 AAAFNHAAAHSLAVVPSCSYIS 90
           AAF HA++HS++++PSCSY+S
Sbjct: 70 VAAFEHASSHSISIIPSCSYVS 91

[Close]

BLAST of Carg17029 vs. ExPASy TrEMBL
Match: A0A6J1FAC0 (acetyltransferase At1g77540-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443529 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.0e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60
          MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL
Sbjct: 1  MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60

Query: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 90
          GLASHLCAAAFNHAAAHSLAVVPSCSYIS
Sbjct: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 89

[Close]

BLAST of Carg17029 vs. ExPASy TrEMBL
Match: A0A6J1FFQ5 (acetyltransferase At1g77540-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443529 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.0e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60
          MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL
Sbjct: 1  MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60

Query: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 90
          GLASHLCAAAFNHAAAHSLAVVPSCSYIS
Sbjct: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 89

[Close]

BLAST of Carg17029 vs. ExPASy TrEMBL
Match: A0A6J1INF9 (acetyltransferase At1g77540-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477115 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.4e-40
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60
          MA+ NPIAGSGTN PKIIWN+AQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL
Sbjct: 1  MASTNPIAGSGTNAPKIIWNEAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60

Query: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 90
          GLASHLCAAAFNHAAAHSLAVVPSCSYIS
Sbjct: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 89

[Close]

BLAST of Carg17029 vs. ExPASy TrEMBL
Match: A0A6J1IKQ1 (acetyltransferase At1g77540-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111477115 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.4e-40
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60
          MA+ NPIAGSGTN PKIIWN+AQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL
Sbjct: 1  MASTNPIAGSGTNAPKIIWNEAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60

Query: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 90
          GLASHLCAAAFNHAAAHSLAVVPSCSYIS
Sbjct: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 89

[Close]

BLAST of Carg17029 vs. ExPASy TrEMBL
Match: A0A6J1IPX1 (acetyltransferase At1g77540-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477115 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.4e-40
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MATPNPIAGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60
          MA+ NPIAGSGTN PKIIWN+AQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL
Sbjct: 1  MASTNPIAGSGTNAPKIIWNEAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGL 60

Query: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 90
          GLASHLCAAAFNHAAAHSLAVVPSCSYIS
Sbjct: 61 GLASHLCAAAFNHAAAHSLAVVPSCSYIS 89

[Close]

BLAST of Carg17029 vs. TAIR 10
Match: AT1G77540.1 (Acyl-CoA N-acyltransferases (NAT) superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 6.5e-29
Identity = 51/82 (62.20%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 8  AGSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGLGLASHLC 67
          A   T PPKI+WN+ +RRFETED +A+++Y ++N GKV+D++HT+VPS KRGLGLASHLC
Sbjct: 10 AKMATEPPKIVWNEGKRRFETEDHEAFIEYKMRNNGKVMDLVHTYVPSFKRGLGLASHLC 69

Query: 68 AAAFNHAAAHSLAVVPSCSYIS 90
           AAF HA++HS++++PSCSY+S
Sbjct: 70 VAAFEHASSHSISIIPSCSYVS 91

[Close]

BLAST of Carg17029 vs. TAIR 10
Match: AT1G21770.1 (Acyl-CoA N-acyltransferases (NAT) superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 5.2e-26
Identity = 48/85 (56.47%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 9  GSGTNPPKIIWNDAQRRFETEDKKAYLQYVIKNQGKVIDMIHTFVPSSKRGLGLASHLCA 68
          G+ T  PKI+WN+ + RFET+D +A+++Y +KN GKV+D++ TFVP SK GLGLASHLC 
Sbjct: 4  GTATEKPKIVWNEGRHRFETDDHEAFIEYKMKNDGKVMDLVRTFVPPSKAGLGLASHLCV 63

Query: 69 AAFNHAAAHSLAVVPSCSYISVSSL 94
          AAF HA+ HS +++P+CSY+S + L
Sbjct: 64 AAFEHASEHSFSIIPTCSYVSETFL 88

The following BLAST results are available for this feature:

BLAST of Carg17029 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024765.1	6.5e-47	100.00	Acetyltransferase, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022937145.1	2.2e-42	100.00	acetyltransferase At1g77540-like isoform X2 [Cucurbita moschata]	[more]
KAG6591893.1	2.2e-42	100.00	Acetyltransferase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022937144.1	2.2e-42	100.00	acetyltransferase At1g77540-like isoform X1 [Cucurbita moschata]	[more]
XP_023536547.1	6.3e-42	98.88	acetyltransferase At1g77540-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg17029 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAQ2	9.2e-28	62.20	Acetyltransferase At1g77540 OS=Arabidopsis thaliana OX=3702 GN=At1g77540 PE=1 SV...	[more]

BLAST of Carg17029 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FAC0	1.0e-42	100.00	acetyltransferase At1g77540-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1FFQ5	1.0e-42	100.00	acetyltransferase At1g77540-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1INF9	6.4e-40	95.51	acetyltransferase At1g77540-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1IKQ1	6.4e-40	95.51	acetyltransferase At1g77540-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1IPX1	6.4e-40	95.51	acetyltransferase At1g77540-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of Carg17029 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77540.1	6.5e-29	62.20	Acyl-CoA N-acyltransferases (NAT) superfamily protein	[more]
AT1G21770.1	5.2e-26	56.47	Acyl-CoA N-acyltransferases (NAT) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.630.30		coord: 10..93 e-value: 3.5E-28 score: 99.6
None	No IPR available	PANTHER	PTHR31435:SF8	ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN	coord: 12..93
IPR031165	Yjdj-type Gcn5-related N-acetyltransferase	PFAM	PF14542	Acetyltransf_CG	coord: 26..89 e-value: 3.7E-18 score: 65.4
IPR031165	Yjdj-type Gcn5-related N-acetyltransferase	PROSITE	PS51729	GNAT_YJDJ	coord: 16..97 score: 14.943969
IPR045057	Gcn5-related N-acetyltransferase	PANTHER	PTHR31435	PROTEIN NATD1	coord: 12..93
IPR016181	Acyl-CoA N-acyltransferase	SUPERFAMILY	55729	Acyl-CoA N-acyltransferases (Nat)	coord: 16..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17029-RA	Carg17029-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity