Carg16986 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16986
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription initiation factor TFIID subunit 15-like
Location	Carg_Chr11: 6851568 .. 6854066 (-)
RNA-Seq Expression	Carg16986
Synteny	Carg16986

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCTATGCGGGTAAAGGAGCCCTCTCCAATGGATCTGTTTACATCTGCAACCTGCCCTTTGGGACTGATGAGAATATGCTTGCGGAATATTTTGGTACAATTGGGTTATTGAAGGTTGGGAGTTTAACCACAATTTTGTTGGCCCTTTTTCACTTTCTATACACATTGGATTTTGCTTTTATTGTTCTTATAATAACTGTTGGACATTTTTTGCTTAATCTTCAAAGAAAGACAAGCGAACAGGTAGACCGAAAATCTGGTTGTATCGCGATAAATCGACGAATGAGCCTAAAGGAGATGCTACTGTGACATATGAGGATCCACATGCAGCTTTAGCAGCTGTTGAATGGTTTGACAATAAGGATTTTCATGGTAACATCATTGAAGTTCATATAGCAGAGTCCAAAAGTAAAGATGATGTCTCGTTTAATGTGGGGGTCGATCCGATTGTTGTTGCTGATACTCTTGATTTTGAGGAAAATGTTGGGGGTGGTATGGACGGGGGCGGTGGAAGGGGGAGAGGTCGAGGTGATGCTCCTCCAGGAAAAGCATGGCAACAAGAGGGAGATTGGCTGTGTCCAAATACAAGGTCTGTGATGTGATATTGGTGAGCAGCTTCTTCTTGCTTCTTTCAATCTTGGCTGGATTCTATGTTCTATTTAGTGTTGTTGAAATGGTTTCTCATGCTCTATCCTACTGGCAGTTGTACCAATGTTAATTTTGCATTTCGTGGTGTGTGTAACCGGTGTGGAAGTGCCCGACCTTCTGGTGCTGCTGGCAGTGGTGCAGGCTCTATAGGTCGTGGCAGGGGCCGTGGCACTGGCAACCAGGAATCAGGAAGCAATAGTCGTCCAGTTGGTGGCCCTACTGGTCTCTTTGGTCCAAATGACTGGCCGTGTCCAATGTAAATATAATCTTCCTTTACTTATATGCCATCGCCATATTATGCGTCCATTAGTTTTAGCTTCGAGTCTAATTTTGTAAAACCTACCAAATTACTTGGTTTATTTTTTCAATGCAACTATACGGATCAAAGTAGATTATATTGACGTTTTAAAAAGAATAAAAAGATGGATTATATATAGTTAGAAGATATAATCACACATCCAAAGGAAAAGAAAAAAGGCGAAGAAGATGATTCGGTGTAGAATCAAACGACAGGAAGTTCATTTCAATATTGGATTTCACACATCTTTTTATCCACCCTTTACTTTTGGTTTAATCTTATGGAATAGAATAAGCATTAAAGACAGTGACACATCTGAATTTATGAAGTTATCTTGCTTTACATGGTTACTTTCTTGTTTCTTTCAGAATGTGTTCTTTTAATTAAATATTTTGAATATCATGGGATGGGGAATGTGATGTCTCACGTTGGTTGGGGAGGATAACAAATCACCCTTTATAAGGGTGTGGAAACCTTTCCCTAGCAGATGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTGGCGGTGGATCTAGGTCGTTACAAATGGTATCAGAGCCAGTCACCGGACGATGTGCCGGCCTTCTCGCTGTTCCCTGAAGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGTTGGGCTCCAAAGGGAGTGGATTTGGGGGCAGTCCCACATCGATTGGATAAAGGAACGAGCGCCAACGAGAACGCTGGGCCCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGAGAGGAGAACAAATCACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACAGCTTTGAGGAGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATTTGCTAGCGGTGAATCTGGGTCGTTACAGGGAAAGGAGGCATCTCTAATGTTAATGTTAATTTGAAGTTTCGGGAGAAGTGTTCTATCGTACGGTTATTTGTTTCTTTAATCTTGTTCTCTGCTTGGATAACACTGCTTGCTTGTGTAACTGGTTGATATTGGTGGTTCCTTCTGCTTTATGTTCCAGGTGTGGTAACATCAATTGGGCAAAGCGCTCGAAATGCAATATTTGTAACACGAACAAACCGGGTCACAATGAGGGTGGCGTGAGGTATAACATGAACTCTTTTGTGTATTTCCCAAGAGAAATAATGCCACTTTTTATTTGATCAAAATATGCTCTAGGCTTTTCTAATAAATTGATGTGAATTTGACTTTTGAGACTGAGTTCTGAGCTTAATCAATTAAATTTAAAGCAAATTTATGGTTCATCTGCAGTATCCTGAACTTTAATTTTGGTATATCTTGGAATAGCTTAGAAACTGGAAATCTATACTTGTTGTTACTACCCTGAAATGAATACTTACAGCCTACAACAAAATTTCTCTTATTTTGAATTATAATTGAACAGAGGTGGGCGGGGTGGAGGTTACAAAGAACTTGATGAAGAAGAGTTGGAGGAGACTAAACGACGTCGGCGTGAAGCTGAAGAAGTAAGATGCTGA

mRNA sequence

ATGGCAAGCTATGCGGGTAAAGGAGCCCTCTCCAATGGATCTGTTTACATCTGCAACCTGCCCTTTGGGACTGATGAGAATATGCTTGCGGAATATTTTGGTACAATTGGGTTATTGAAGAAAGACAAGCGAACAGGTAGACCGAAAATCTGGTTGTATCGCGATAAATCGACGAATGAGCCTAAAGGAGATGCTACTGTGACATATGAGGATCCACATGCAGCTTTAGCAGCTGTTGAATGGTTTGACAATAAGGATTTTCATGGTAACATCATTGAAGTTCATATAGCAGAGTCCAAAAGTAAAGATGATGTCTCGTTTAATGTGGGGGTCGATCCGATTGTTGTTGCTGATACTCTTGATTTTGAGGAAAATGTTGGGGGTGGTATGGACGGGGGCGGTGGAAGGGGGAGAGGTCGAGGTGATGCTCCTCCAGGAAAAGCATGGCAACAAGAGGGAGATTGGCTGTGTCCAAATACAAGTTGTACCAATGTTAATTTTGCATTTCGTGGTGTGTGTAACCGGTGTGGAAGTGCCCGACCTTCTGGTGCTGCTGGCAGTGGTGCAGGCTCTATAGGTCGTGGCAGGGGCCGTGGCACTGGCAACCAGGAATCAGGAAGCAATAGTCGTCCAGTTGGTGGCCCTACTGGTCTCTTTGGTCCAAATGACTGGCCGTGTCCAATGTGTGGTAACATCAATTGGGCAAAGCGCTCGAAATGCAATATTTGTAACACGAACAAACCGGGTCACAATGAGGGTGGCGTGAGAGGTGGGCGGGGTGGAGGTTACAAAGAACTTGATGAAGAAGAGTTGGAGGAGACTAAACGACGTCGGCGTGAAGCTGAAGAAGTAAGATGCTGA

Coding sequence (CDS)

ATGGCAAGCTATGCGGGTAAAGGAGCCCTCTCCAATGGATCTGTTTACATCTGCAACCTGCCCTTTGGGACTGATGAGAATATGCTTGCGGAATATTTTGGTACAATTGGGTTATTGAAGAAAGACAAGCGAACAGGTAGACCGAAAATCTGGTTGTATCGCGATAAATCGACGAATGAGCCTAAAGGAGATGCTACTGTGACATATGAGGATCCACATGCAGCTTTAGCAGCTGTTGAATGGTTTGACAATAAGGATTTTCATGGTAACATCATTGAAGTTCATATAGCAGAGTCCAAAAGTAAAGATGATGTCTCGTTTAATGTGGGGGTCGATCCGATTGTTGTTGCTGATACTCTTGATTTTGAGGAAAATGTTGGGGGTGGTATGGACGGGGGCGGTGGAAGGGGGAGAGGTCGAGGTGATGCTCCTCCAGGAAAAGCATGGCAACAAGAGGGAGATTGGCTGTGTCCAAATACAAGTTGTACCAATGTTAATTTTGCATTTCGTGGTGTGTGTAACCGGTGTGGAAGTGCCCGACCTTCTGGTGCTGCTGGCAGTGGTGCAGGCTCTATAGGTCGTGGCAGGGGCCGTGGCACTGGCAACCAGGAATCAGGAAGCAATAGTCGTCCAGTTGGTGGCCCTACTGGTCTCTTTGGTCCAAATGACTGGCCGTGTCCAATGTGTGGTAACATCAATTGGGCAAAGCGCTCGAAATGCAATATTTGTAACACGAACAAACCGGGTCACAATGAGGGTGGCGTGAGAGGTGGGCGGGGTGGAGGTTACAAAGAACTTGATGAAGAAGAGTTGGAGGAGACTAAACGACGTCGGCGTGAAGCTGAAGAAGTAAGATGCTGA

Protein sequence

MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTLDFEENVGGGMDGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEVRC

Homology

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BLAST of Carg16986 vs. NCBI nr
Match: KAG7022354.1 (Transcription initiation factor TFIID subunit 15, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 588.2 bits (1515), Expect = 3.9e-164
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60
           MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120
           PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120

Query: 121 DFEENVGGGMDGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180
           DFEENVGGGMDGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR
Sbjct: 121 DFEENVGGGMDGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180

Query: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240
           PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC
Sbjct: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240

Query: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEVRC 287
           NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEVRC
Sbjct: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEVRC 286

[Close]

BLAST of Carg16986 vs. NCBI nr
Match: KAG6588558.1 (Transcription initiation factor TFIID subunit 15, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 578.9 bits (1491), Expect = 2.3e-161
Identity = 282/283 (99.65%), Postives = 283/283 (100.00%), Query Frame = 0


Query: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60
           MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120
           PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120

Query: 121 DFEENVGGGMDGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180
           DFEENVGGGM+GGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR
Sbjct: 121 DFEENVGGGMNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180

Query: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240
           PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC
Sbjct: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240

Query: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE 284
           NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE
Sbjct: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE 283

[Close]

BLAST of Carg16986 vs. NCBI nr
Match: XP_022931706.1 (transcription initiation factor TFIID subunit 15-like [Cucurbita moschata])

HSP 1 Score: 578.9 bits (1491), Expect = 2.3e-161
Identity = 282/283 (99.65%), Postives = 283/283 (100.00%), Query Frame = 0


Query: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60
           MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120
           PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120

Query: 121 DFEENVGGGMDGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180
           DFEENVGGGM+GGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR
Sbjct: 121 DFEENVGGGMNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180

Query: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240
           PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC
Sbjct: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240

Query: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE 284
           NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE
Sbjct: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE 283

[Close]

BLAST of Carg16986 vs. NCBI nr
Match: XP_023531993.1 (transcription initiation factor TFIID subunit 15-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 573.5 bits (1477), Expect = 9.8e-160
Identity = 279/283 (98.59%), Postives = 281/283 (99.29%), Query Frame = 0


Query: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60
           MA+YAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MATYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120
           PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVV DTL
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVGDTL 120

Query: 121 DFEENVGGGMDGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180
           DFEEN GGGM+GGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR
Sbjct: 121 DFEENDGGGMNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180

Query: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240
           PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC
Sbjct: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240

Query: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE 284
           NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE
Sbjct: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE 283

[Close]

BLAST of Carg16986 vs. NCBI nr
Match: XP_022969708.1 (transcription initiation factor TFIID subunit 15-like [Cucurbita maxima])

HSP 1 Score: 570.1 bits (1468), Expect = 1.1e-158
Identity = 278/283 (98.23%), Postives = 279/283 (98.59%), Query Frame = 0


Query: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60
           MASYAGKGALSNGSVYICNLP GTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYAGKGALSNGSVYICNLPIGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120
           PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVV DTL
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVGDTL 120

Query: 121 DFEENVGGGMDGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180
           DFEENVG GM+GGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR
Sbjct: 121 DFEENVGDGMNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180

Query: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240
           PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC
Sbjct: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240

Query: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE 284
           NICNTNKPGHNEGGVRGGRGGGYKELDEEELEE KRRRREAEE
Sbjct: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEEIKRRRREAEE 283

[Close]

BLAST of Carg16986 vs. ExPASy Swiss-Prot
Match: Q9AST1 (Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702 GN=TAF15 PE=1 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 2.2e-109
Identity = 199/277 (71.84%), Postives = 221/277 (79.78%), Query Frame = 0


Query: 8   GALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNEPKGDATV 67
           G  +NGSVY+ NLP GTDENMLA+YFGTIGLLK+DKRTG PK+WLYRDK T+EPKGDATV
Sbjct: 3   GYPTNGSVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEPKGDATV 62

Query: 68  TYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTLDFEENVG 127
           TYEDPHAALAAVEWF+NKDFHGN I V +AESK+K+              D ++F E  G
Sbjct: 63  TYEDPHAALAAVEWFNNKDFHGNTIGVFMAESKNKN------------AGDAVEFVEFDG 122

Query: 128 GGMDGGGGRGRGRGDA-PPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSARPSGAAG 187
           G  +  GG GRGRG A    K WQQ+GDW+CPNTSCTNVNFAFRGVCNRCG+ARP+GA+G
Sbjct: 123 GAEETNGGAGRGRGQADSSAKPWQQDGDWMCPNTSCTNVNFAFRGVCNRCGTARPAGASG 182

Query: 188 SGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKCNICNTN 247
              G+ GRGRGRG G        +P G PTGLFGPNDW CPMCGN+NWAKR KCNICNTN
Sbjct: 183 GSMGA-GRGRGRGGGADGGAPGKQPSGAPTGLFGPNDWACPMCGNVNWAKRLKCNICNTN 242

Query: 248 KPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE 284
           KPG NEGGVRGGRGGGYKELDE+ELEETKRRRREAEE
Sbjct: 243 KPGQNEGGVRGGRGGGYKELDEQELEETKRRRREAEE 266

[Close]

BLAST of Carg16986 vs. ExPASy Swiss-Prot
Match: Q92804 (TATA-binding protein-associated factor 2N OS=Homo sapiens OX=9606 GN=TAF15 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.4e-31
Identity = 96/262 (36.64%), Postives = 131/262 (50.00%), Query Frame = 0


Query: 12  NGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNEPKGDATVTYED 71
           N ++++  L  G   + + E+F  IG++K +K+TG+P I LY DK T +PKG+ATV+++D
Sbjct: 233 NNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDD 292

Query: 72  PHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTLDFEENVGGGMD 131
           P +A AA++WFD K+FHGNII+V  A  +                       E + GG  
Sbjct: 293 PPSAKAAIDWFDGKEFHGNIIKVSFATRR----------------------PEFMRGGGS 352

Query: 132 GGGGRG----RGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSARPSGAAGS 191
           GGG RG    RGRG         + GDW+CPN SC N+NFA R  CN+C   RP  +  S
Sbjct: 353 GGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPS 412

Query: 192 GAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKCNICNTNK 251
           G    GRG G   G +  G      GG  G +G +       G      RS     + ++
Sbjct: 413 GGDFRGRGYGGERGYRGRGGR----GGDRGGYGGD-----RSGGGYGGDRSSGGGYSGDR 463

Query: 252 PGHNEGGVRGG------RGGGY 264
            G   GG R G      RGGGY
Sbjct: 473 SGGGYGGDRSGGGYGGDRGGGY 463

[Close]

BLAST of Carg16986 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 3.4e-30
Identity = 100/283 (35.34%), Postives = 135/283 (47.70%), Query Frame = 0


Query: 14  SVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPH 73
           ++++  +   T E  +  +FG IG++KKDKRT +PKIWLY++K T   KG+ATVTY+D +
Sbjct: 121 TIFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYDDTN 180

Query: 74  AALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTLDFEENVGGGMDGG 133
           AA +A+EWFD +DF+GN I+V +A+ ++  +     G                GGG  GG
Sbjct: 181 AAQSAIEWFDGRDFNGNAIKVSLAQRQNNWNKGGGGGGGGGGRGGFGGRRGGGGGGGGGG 240

Query: 134 GGRGR-----------------GRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRC 193
           GG GR                 G G    G    ++GDW C   SC N NFA+R  CNRC
Sbjct: 241 GGGGRFDRGGGGGGGRYDRGGGGGGGGGGGNVQPRDGDWKC--NSCNNTNFAWRNECNRC 300

Query: 194 --------GSARPSGAAGSGAGSIG----RGRGRGTG-----NQESGSNSRPVGGPTGLF 253
                   GS+   G  G G G  G    RG  RG+G     N++ G NS+  GG  G  
Sbjct: 301 KTPKGDDEGSSGGGGGGGYGGGGGGGGYDRGNDRGSGGGGYHNRDRGGNSQGGGGGGGGG 360

Query: 254 GPNDWPCPMCGNINWAKRSKCNICNTNKPGHNEGGVRGGRGGG 263
           G                         ++   N GG RGGRGGG
Sbjct: 361 G-----------------------GYSRFNDNNGGGRGGRGGG 378

[Close]

BLAST of Carg16986 vs. ExPASy Swiss-Prot
Match: P56959 (RNA-binding protein FUS OS=Mus musculus OX=10090 GN=Fus PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-28
Identity = 80/225 (35.56%), Postives = 114/225 (50.67%), Query Frame = 0


Query: 12  NGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNEPKGDATVTYED 71
           N ++++  L        +A+YF  IG++K +K+TG+P I LY D+ T + KG+ATV+++D
Sbjct: 277 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 336

Query: 72  PHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTLDFEENVGGGMD 131
           P +A AA++WFD K+F GN I+V  A  ++  +     G         +      GGG  
Sbjct: 337 PPSAKAAIDWFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMG-RGGYGGGGS 396

Query: 132 GGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSARPSGAAGS---- 191
           GGGGRG        G   Q+ GDW CPN +C N+NF++R  CN+C + +P G  G     
Sbjct: 397 GGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGS 456

Query: 192 -----------GAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGP 222
                      G G   RG  RG G    G      GG  G FGP
Sbjct: 457 HMGGNYGDDRRGRGGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGP 500

[Close]

BLAST of Carg16986 vs. ExPASy Swiss-Prot
Match: Q28009 (RNA-binding protein FUS OS=Bos taurus OX=9913 GN=FUS PE=2 SV=2)

HSP 1 Score: 127.5 bits (319), Expect = 2.4e-28
Identity = 80/226 (35.40%), Postives = 114/226 (50.44%), Query Frame = 0


Query: 12  NGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNEPKGDATVTYED 71
           N ++++  L        +A+YF  IG++K +K+TG+P I LY D+ T + KG+ATV+++D
Sbjct: 271 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 330

Query: 72  PHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTLDFEENVGGGMD 131
           P +A AA++WFD K+F GN I+V  A  ++  +     G         +      GGG  
Sbjct: 331 PPSAKAAIDWFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMG-RGGYGGGGS 390

Query: 132 GGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSARPSGAAG----- 191
           GGGGRG        G   Q+ GDW CPN +C N+NF++R  CN+C + +P G  G     
Sbjct: 391 GGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGS 450

Query: 192 -----------SGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGP 222
                       G G   RG  RG G    G      GG  G FGP
Sbjct: 451 HMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGP 495

[Close]

BLAST of Carg16986 vs. ExPASy TrEMBL
Match: A0A6J1EUE8 (transcription initiation factor TFIID subunit 15-like OS=Cucurbita moschata OX=3662 GN=LOC111437859 PE=4 SV=1)

HSP 1 Score: 578.9 bits (1491), Expect = 1.1e-161
Identity = 282/283 (99.65%), Postives = 283/283 (100.00%), Query Frame = 0


Query: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60
           MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120
           PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120

Query: 121 DFEENVGGGMDGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180
           DFEENVGGGM+GGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR
Sbjct: 121 DFEENVGGGMNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180

Query: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240
           PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC
Sbjct: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240

Query: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE 284
           NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE
Sbjct: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE 283

[Close]

BLAST of Carg16986 vs. ExPASy TrEMBL
Match: A0A6J1I1S4 (transcription initiation factor TFIID subunit 15-like OS=Cucurbita maxima OX=3661 GN=LOC111468746 PE=4 SV=1)

HSP 1 Score: 570.1 bits (1468), Expect = 5.3e-159
Identity = 278/283 (98.23%), Postives = 279/283 (98.59%), Query Frame = 0


Query: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60
           MASYAGKGALSNGSVYICNLP GTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYAGKGALSNGSVYICNLPIGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120
           PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVV DTL
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVGDTL 120

Query: 121 DFEENVGGGMDGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180
           DFEENVG GM+GGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR
Sbjct: 121 DFEENVGDGMNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180

Query: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240
           PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC
Sbjct: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240

Query: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE 284
           NICNTNKPGHNEGGVRGGRGGGYKELDEEELEE KRRRREAEE
Sbjct: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEEIKRRRREAEE 283

[Close]

BLAST of Carg16986 vs. ExPASy TrEMBL
Match: A0A6J1F8E5 (transcription initiation factor TFIID subunit 15-like OS=Cucurbita moschata OX=3662 GN=LOC111441809 PE=4 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 3.9e-146
Identity = 259/283 (91.52%), Postives = 269/283 (95.05%), Query Frame = 0


Query: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60
           MASYAGKGALSNGSVY+CNLP+GTD+NMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYAGKGALSNGSVYVCNLPYGTDDNMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120
           PKGDATVTYEDPHAALAAVEWF+NKDFHGNIIEVHIAESKSKDD+SFNVG DPIVV D L
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGNIIEVHIAESKSKDDLSFNVGDDPIVVGDDL 120

Query: 121 DFEENVGGGMDGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180
            FEEN    ++GGGGRGRGRGD  PGKAWQQEGDWLCPNTSC+NVNFAFRGVCNRCGSAR
Sbjct: 121 GFEEN-AADVNGGGGRGRGRGDV-PGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSAR 180

Query: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240
           PSGAAGSGAGSIGRGRGRGT NQ+SG NSR VGGPTGLFGPNDWPCPMCGNINWAKR+KC
Sbjct: 181 PSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGPNDWPCPMCGNINWAKRTKC 240

Query: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE 284
           NICNTNKPGHNEGG RGGRGGGYKELDEEELEETKRRRREAEE
Sbjct: 241 NICNTNKPGHNEGGTRGGRGGGYKELDEEELEETKRRRREAEE 281

[Close]

BLAST of Carg16986 vs. ExPASy TrEMBL
Match: A0A6J1J0B4 (transcription initiation factor TFIID subunit 15-like OS=Cucurbita maxima OX=3661 GN=LOC111482305 PE=4 SV=1)

HSP 1 Score: 526.9 bits (1356), Expect = 5.1e-146
Identity = 258/283 (91.17%), Postives = 269/283 (95.05%), Query Frame = 0


Query: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60
           MASYAGKGALSNGSVY+CNLP+GTD+NMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYAGKGALSNGSVYVCNLPYGTDDNMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120
           PKGDATVTYEDPHAALAAVEWF+NKDFHGNIIEVHIAESKSKDD+SFNVG DPIVV D L
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGNIIEVHIAESKSKDDLSFNVGDDPIVVGDDL 120

Query: 121 DFEENVGGGMDGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180
            FEEN    ++GGGGRGRGRGD  PGKAWQQEGDWLCPNTSC+NVNFAFRGVCNRCGSAR
Sbjct: 121 GFEEN-AADVNGGGGRGRGRGDV-PGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSAR 180

Query: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240
           PSG+AGSGAGSIGRGRGRGTGNQ+SG N R VGGPTGLFGPNDWPCPMCGNINWAKR+KC
Sbjct: 181 PSGSAGSGAGSIGRGRGRGTGNQDSGGNGRQVGGPTGLFGPNDWPCPMCGNINWAKRTKC 240

Query: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE 284
           NICNTNKPGHNEGG RGGRGGGYKELDEEELEETKRRRREAEE
Sbjct: 241 NICNTNKPGHNEGGTRGGRGGGYKELDEEELEETKRRRREAEE 281

[Close]

BLAST of Carg16986 vs. ExPASy TrEMBL
Match: A0A1S3B7U8 (transcription initiation factor TFIID subunit 15 OS=Cucumis melo OX=3656 GN=LOC103486976 PE=4 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 3.7e-144
Identity = 257/284 (90.49%), Postives = 270/284 (95.07%), Query Frame = 0


Query: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60
           MASY GKGA SNGS+YICNLP+GTDENMLAEYFGTIG+LKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVA-DT 120
           PKGDATVTYEDPHAALAAVEWF+NKDFHG+IIEVHIAESK+KDD+SFNVGVDPIV A D 
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKNKDDISFNVGVDPIVAAGDD 120

Query: 121 LDFEENVGGGMDGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSA 180
           +  EE+   GM+GGGGRGRGRGDA PGKAWQQEGDWLCPNTSC+NVNFAFRGVCNRCGSA
Sbjct: 121 IGPEEST-AGMNGGGGRGRGRGDA-PGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSA 180

Query: 181 RPSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSK 240
           RPSGAAGSGAGSIGRGRGRGT NQ+SG NSR VGGPTGLFGPNDWPCPMCGNINWAKR+K
Sbjct: 181 RPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGPNDWPCPMCGNINWAKRTK 240

Query: 241 CNICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE 284
           CNICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE
Sbjct: 241 CNICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE 282

[Close]

BLAST of Carg16986 vs. TAIR 10
Match: AT1G50300.1 (TBP-associated factor 15 )

HSP 1 Score: 396.7 bits (1018), Expect = 1.5e-110
Identity = 199/277 (71.84%), Postives = 221/277 (79.78%), Query Frame = 0


Query: 8   GALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNEPKGDATV 67
           G  +NGSVY+ NLP GTDENMLA+YFGTIGLLK+DKRTG PK+WLYRDK T+EPKGDATV
Sbjct: 3   GYPTNGSVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEPKGDATV 62

Query: 68  TYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTLDFEENVG 127
           TYEDPHAALAAVEWF+NKDFHGN I V +AESK+K+              D ++F E  G
Sbjct: 63  TYEDPHAALAAVEWFNNKDFHGNTIGVFMAESKNKN------------AGDAVEFVEFDG 122

Query: 128 GGMDGGGGRGRGRGDA-PPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSARPSGAAG 187
           G  +  GG GRGRG A    K WQQ+GDW+CPNTSCTNVNFAFRGVCNRCG+ARP+GA+G
Sbjct: 123 GAEETNGGAGRGRGQADSSAKPWQQDGDWMCPNTSCTNVNFAFRGVCNRCGTARPAGASG 182

Query: 188 SGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKCNICNTN 247
              G+ GRGRGRG G        +P G PTGLFGPNDW CPMCGN+NWAKR KCNICNTN
Sbjct: 183 GSMGA-GRGRGRGGGADGGAPGKQPSGAPTGLFGPNDWACPMCGNVNWAKRLKCNICNTN 242

Query: 248 KPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEE 284
           KPG NEGGVRGGRGGGYKELDE+ELEETKRRRREAEE
Sbjct: 243 KPGQNEGGVRGGRGGGYKELDEQELEETKRRRREAEE 266

[Close]

BLAST of Carg16986 vs. TAIR 10
Match: AT5G58470.1 (TBP-associated factor 15B )

HSP 1 Score: 57.0 bits (136), Expect = 2.9e-08
Identity = 38/82 (46.34%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 127 GGGMDGG--GGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSARPSGA 186
           GGG  GG  GGRG G G         ++GDW CPN SC NVNFA R  CN+CG+  PSG 
Sbjct: 66  GGGYQGGDRGGRGSGGGG--------RDGDWRCPNPSCGNVNFARRVECNKCGALAPSGT 125

Query: 187 AGSGAGSIGRGRGRGTGNQESG 207
           +       G G  RG G+ + G
Sbjct: 126 SSGANDRGGGGYSRGGGDSDRG 139

[Close]

BLAST of Carg16986 vs. TAIR 10
Match: AT5G58470.2 (TBP-associated factor 15B )

HSP 1 Score: 57.0 bits (136), Expect = 2.9e-08
Identity = 38/82 (46.34%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 127 GGGMDGG--GGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSARPSGA 186
           GGG  GG  GGRG G G         ++GDW CPN SC NVNFA R  CN+CG+  PSG 
Sbjct: 66  GGGYQGGDRGGRGSGGGG--------RDGDWRCPNPSCGNVNFARRVECNKCGALAPSGT 125

Query: 187 AGSGAGSIGRGRGRGTGNQESG 207
           +       G G  RG G+ + G
Sbjct: 126 SSGANDRGGGGYSRGGGDSDRG 139

The following BLAST results are available for this feature:

BLAST of Carg16986 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022354.1	3.9e-164	100.00	Transcription initiation factor TFIID subunit 15, partial [Cucurbita argyrosperm...	[more]
KAG6588558.1	2.3e-161	99.65	Transcription initiation factor TFIID subunit 15, partial [Cucurbita argyrosperm...	[more]
XP_022931706.1	2.3e-161	99.65	transcription initiation factor TFIID subunit 15-like [Cucurbita moschata]	[more]
XP_023531993.1	9.8e-160	98.59	transcription initiation factor TFIID subunit 15-like [Cucurbita pepo subsp. pep...	[more]
XP_022969708.1	1.1e-158	98.23	transcription initiation factor TFIID subunit 15-like [Cucurbita maxima]	[more]

BLAST of Carg16986 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AST1	2.2e-109	71.84	Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702...	[more]
Q92804	2.4e-31	36.64	TATA-binding protein-associated factor 2N OS=Homo sapiens OX=9606 GN=TAF15 PE=1 ...	[more]
Q27294	3.4e-30	35.34	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2	[more]
P56959	1.9e-28	35.56	RNA-binding protein FUS OS=Mus musculus OX=10090 GN=Fus PE=1 SV=1	[more]
Q28009	2.4e-28	35.40	RNA-binding protein FUS OS=Bos taurus OX=9913 GN=FUS PE=2 SV=2	[more]

BLAST of Carg16986 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EUE8	1.1e-161	99.65	transcription initiation factor TFIID subunit 15-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1I1S4	5.3e-159	98.23	transcription initiation factor TFIID subunit 15-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1F8E5	3.9e-146	91.52	transcription initiation factor TFIID subunit 15-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1J0B4	5.1e-146	91.17	transcription initiation factor TFIID subunit 15-like OS=Cucurbita maxima OX=366...	[more]
A0A1S3B7U8	3.7e-144	90.49	transcription initiation factor TFIID subunit 15 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Carg16986 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50300.1	1.5e-110	71.84	TBP-associated factor 15	[more]
AT5G58470.1	2.9e-08	46.34	TBP-associated factor 15B	[more]
AT5G58470.2	2.9e-08	46.34	TBP-associated factor 15B	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 264..284
None	No IPR available	GENE3D	4.10.1060.10		coord: 219..250 e-value: 2.8E-9 score: 38.1 coord: 149..184 e-value: 4.3E-13 score: 50.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 261..286
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..286
None	No IPR available	PANTHER	PTHR12999	ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED	coord: 1..283
None	No IPR available	PANTHER	PTHR12999:SF17	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15	coord: 1..283
None	No IPR available	CDD	cd12534	RRM_SARFH	coord: 15..97 e-value: 2.39127E-53 score: 166.441
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 222..246 e-value: 3.0E-6 score: 36.8 coord: 153..179 e-value: 1.0E-5 score: 35.0
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 152..182 e-value: 2.1E-7 score: 30.1 coord: 223..249 e-value: 2.5E-4 score: 20.3
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 224..243
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 155..176
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 151..182 score: 9.992108
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 220..249 score: 9.506543
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 14..95 e-value: 5.4E-12 score: 55.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 15..92 e-value: 4.3E-7 score: 29.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 13..99 score: 11.622288
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 12..95 e-value: 5.3E-21 score: 76.7
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 144..183
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 213..250
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 12..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16986-RA	Carg16986-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003676	nucleic acid binding