Carg16981 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16981
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L30
LocationCarg_Chr11: 6799954 .. 6802131 (-)
RNA-Seq ExpressionCarg16981
SyntenyCarg16981
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAGAACCCGTGGGAGCTCTATATATATATTCTTGGAATTAGGGTTTTGGCTGTAGTTGAACAATCTCGGCGTGTTGAGCAGCAGCAGCTTCTAATCTTCCATCATGGTGGCCGCAAAGAAGACGGTGAGTTTCTTCTTTCATTTCCGGTGATTTTGGGCGTTCTTTCTTACATTTTCGATCTGGAGTATGCTCATATGTTTTTGATTGTGAAACCTACAACAGAAGAAGACCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACTGTCCTCAAGACCTTGAGGAACTCTAAAGGTAATCTATTGATTTTGTTTTCCACTTTGTGTTATTGATCTGCTCTCTGGACATTACCTCGATGTATGCTTGTTCGTTGATAAGGCAGTTCATTAGGTGATTGTTTTCGTGATTGATATTTGGTTGATTTTTCAGTTGACCAATTGTGTTTTAGTTGGTTCTAGTTTTCGCTGGAATTACTGAAATTTTCGAATCAAAGTCTGATGTTTAGCATGAGATCATGGAAATGTTGTATGCCGTCGATCTGAAACCTTGTTTCTTACAGTATTCAAAGCATTATCAGATATTTTTATTACTATTCTTCTAGTCTTAATCCAACACTCAGTAGTTGATTTAGTTTACTAACTTTTGTTATCCTATTAAATAAACTACTATGTTGCCGTCTTTCCCTTGAGCAGTGAAGAGGTCCGTAGTGTCTGATTTGTTTGTTGTCCATGTTCTCTGTTACGTTGATTTTATGCATTTGAGGTTATGTCTGATTATTTTGTTGGATTTTCAGGTAAGCTTATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCTGAGATCGAATATTATGCGATGTTGGCAAAGGTTGGAGTTCACCATTACAATGGAAGTAAGTTTCTAACCTTTCTTTTAAAATTAAGGATTTGGCCTTTTTTGGTACTACTTTTTAATTTATTTGGCATTTAGAATAAGAACATGTATCCACCTGCATCTGGAGATTAGTGAAAGATAAAATTTTGTTTCTTGGTTGGGAAATTGTTAATATCGAGCTAGAATTTTTGGATTACTTGATGGCCTTTATTCATAACAAACTAAGCAATTGCTACCTGTCGTGATTATGTTAATACTTTTGATAATTCAGAGGCCAAGACTTAGGCTTCAAACAACAACCTAGGCGATGGGTAGAGACACCCCCCACCCCCTCCCCCCTAAAATCTCAAGGAATTAGAGCCTCCCATTCAGAGGATAGGCTGTAACTATAAAAGAATTTAGACCCTTTATCCTTATTATTTGTTTCTGCCTCGTGTCTTGTGTTTCGCGTTGATTATGATGGTGTTTGCCCAAATTACACTTGAGAACTGATCTCTATTTTTGTATGTTTTCAGGCAACGTAGACCTTGGAACCGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCTGGTACGTATACTTTTCGATAATCCCATGTTCTATTCTTAGATAACTAGCCATCGCATAATGTTCTAATTATGGTATTTAATGTCCTTCAGGCGATTCAGATATCATCAAGAGCTTGCCCGGAGAAAGTTAGGTTGCAGATCATAGATTTTTGTTTCAGAGTTTCATTTTAATCCACTTGATTTTGGGTTGGGCGTAGCGATATTTTGAACGAACCGTTTCGTTATAAACTCTTTTATGTACGAGAATGCATTAATGTCAGTTCAAATCTGTTCCTGGTTTGTATTCATAATATCAATCTTGTGAGGCATTTCAGACAAGTTTCATATCGTTAGTTTGGTTTCTAAATCTTCCCTGATTACAAAACAAGCATGTCTCCAAATATTACGTTAGTTCATCTTTCCTTTGATAATGCATTAATGCCCGTTCCAATCTGTTCTTGGTGTTTGTATCACATAATCTCAAGAACAGAATCGAAATCAAATGCCAACCCTCGGCTGCTTGGCTGGATGGATATAGCTTTCTTAATCTTGTTTGTTTCTTAAGATATGTTGGGAGATGATTTCAGTAACGACTCTAATTGATTTAAATCCTAAGTCTATTTTCATCAAGTTTTGTGGAAGGGTCGAGATTCTAGGCATTGACATATGGATTTAACATTTATAAATTTTTGTAAGATATGAA

mRNA sequence

GGAAGAACCCGTGGGAGCTCTATATATATATTCTTGGAATTAGGGTTTTGGCTGTAGTTGAACAATCTCGGCGTGTTGAGCAGCAGCAGCTTCTAATCTTCCATCATGGTGGCCGCAAAGAAGACGAAGAAGACCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACTGTCCTCAAGACCTTGAGGAACTCTAAAGGTAAGCTTATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCTGAGATCGAATATTATGCGATGTTGGCAAAGGTTGGAGTTCACCATTACAATGGAAGCAACGTAGACCTTGGAACCGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCTGGCGATTCAGATATCATCAAGAGCTTGCCCGGAGAAAGTTAGGTTGCAGATCATAGATTTTTGTTTCAGAGTTTCATTTTAATCCACTTGATTTTGGGTTGGGCGTAGCGATATTTTGAACGAACCGTTTCGTTATAAACTCTTTTATGTACGAGAATGCATTAATGTCAGTTCAAATCTGTTCCTGGTTTGTATTCATAATATCAATCTTGTGAGGCATTTCAGACAAGTTTCATATCGTTAGTTTGGTTTCTAAATCTTCCCTGATTACAAAACAAGCATGTCTCCAAATATTACGTTAGTTCATCTTTCCTTTGATAATGCATTAATGCCCGTTCCAATCTGTTCTTGGTGTTTGTATCACATAATCTCAAGAACAGAATCGAAATCAAATGCCAACCCTCGGCTGCTTGGCTGGATGGATATAGCTTTCTTAATCTTGTTTGTTTCTTAAGATATGTTGGGAGATGATTTCAGTAACGACTCTAATTGATTTAAATCCTAAGTCTATTTTCATCAAGTTTTGTGGAAGGGTCGAGATTCTAGGCATTGACATATGGATTTAACATTTATAAATTTTTGTAAGATATGAA

Coding sequence (CDS)

ATGGTGGCCGCAAAGAAGACGAAGAAGACCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACTGTCCTCAAGACCTTGAGGAACTCTAAAGGTAAGCTTATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCTGAGATCGAATATTATGCGATGTTGGCAAAGGTTGGAGTTCACCATTACAATGGAAGCAACGTAGACCTTGGAACCGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCTGGCGATTCAGATATCATCAAGAGCTTGCCCGGAGAAAGTTAG

Protein sequence

MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES
Homology
[Close]
BLAST of Carg16981 vs. NCBI nr
Match: XP_022960585.1 (60S ribosomal protein L30-like [Cucurbita moschata] >XP_022988235.1 60S ribosomal protein L30-like [Cucurbita maxima] >XP_023515547.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >KAG7022349.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.6 bits (584), Expect = 1.4e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES 113
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES 112

[Close]
BLAST of Carg16981 vs. NCBI nr
Match: XP_038878626.1 (60S ribosomal protein L30 [Benincasa hispida])

HSP 1 Score: 228.8 bits (582), Expect = 2.3e-56
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES 113
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+PGES
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGES 112

[Close]
BLAST of Carg16981 vs. NCBI nr
Match: KAG6590249.1 (60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.0 bits (580), Expect = 4.0e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGE 112
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGE
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGE 111

[Close]
BLAST of Carg16981 vs. NCBI nr
Match: XP_022157366.1 (60S ribosomal protein L30 [Momordica charantia])

HSP 1 Score: 227.3 bits (578), Expect = 6.8e-56
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGE 112
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+PGE
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGE 111

[Close]
BLAST of Carg16981 vs. NCBI nr
Match: XP_022925483.1 (60S ribosomal protein L30 [Cucurbita moschata] >XP_022968625.1 60S ribosomal protein L30 [Cucurbita maxima] >XP_023529418.1 60S ribosomal protein L30 [Cucurbita pepo subsp. pepo] >KAG6588153.1 60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022046.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.7 bits (574), Expect = 2.0e-55
Identity = 109/112 (97.32%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES 113
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+PG+S
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS 112

[Close]
BLAST of Carg16981 vs. ExPASy Swiss-Prot
Match: O49884 (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 8.3e-57
Identity = 105/111 (94.59%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLK+LR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGE 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSI+DPGDSDIIK+LPG+
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGD 111

[Close]
BLAST of Carg16981 vs. ExPASy Swiss-Prot
Match: Q9M5M6 (60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 8.6e-54
Identity = 100/111 (90.09%), Postives = 110/111 (99.10%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESIN+RLALVMKSGK+TLGYKTVL++LR++KGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGE 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RVCCLSIID GDSDIIKS+PG+
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGD 111

[Close]
BLAST of Carg16981 vs. ExPASy Swiss-Prot
Match: Q9C8F7 (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.0e-51
Identity = 95/111 (85.59%), Postives = 108/111 (97.30%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGE 112
           EYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPGDSDIIKSLPG+
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGD 111

[Close]
BLAST of Carg16981 vs. ExPASy Swiss-Prot
Match: Q8VZ19 (60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.5e-50
Identity = 93/111 (83.78%), Postives = 105/111 (94.59%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGE 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPGDSDIIKS+PG+
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGD 111

[Close]
BLAST of Carg16981 vs. ExPASy Swiss-Prot
Match: O48558 (60S ribosomal protein L30 OS=Zea mays OX=4577 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.0e-50
Identity = 94/111 (84.68%), Postives = 105/111 (94.59%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVA KKTKK+ ++INN+L LVMKSGKYTLGYKTVL+TLRNSK KL+IIANNCPPLRKSEI
Sbjct: 1   MVATKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKSKLVIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGE 112
           EYYAMLAKV VHH++G+NVDLGTACGKY+RVCCLSIIDPGDSDIIK+ PGE
Sbjct: 61  EYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTTPGE 111

[Close]
BLAST of Carg16981 vs. ExPASy TrEMBL
Match: A0A6J1JJ11 (60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111485536 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 6.6e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES 113
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES 112

[Close]
BLAST of Carg16981 vs. ExPASy TrEMBL
Match: A0A6J1H9H7 (60S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111461321 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 6.6e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES 113
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES 112

[Close]
BLAST of Carg16981 vs. ExPASy TrEMBL
Match: A0A6J1DXV1 (60S ribosomal protein L30 OS=Momordica charantia OX=3673 GN=LOC111024087 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.3e-56
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGE 112
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+PGE
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGE 111

[Close]
BLAST of Carg16981 vs. ExPASy TrEMBL
Match: A0A6J1HXQ4 (60S ribosomal protein L30 OS=Cucurbita maxima OX=3661 GN=LOC111467784 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.5e-56
Identity = 109/112 (97.32%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES 113
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKS+PG+S
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS 112

[Close]
BLAST of Carg16981 vs. ExPASy TrEMBL
Match: A0A2N9FM19 (Ribosomal_L7Ae domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16095 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.5e-56
Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKL+IIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLVIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGE 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIKS+PGE
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGE 111

[Close]
BLAST of Carg16981 vs. TAIR 10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 201.8 bits (512), Expect = 2.8e-52
Identity = 95/111 (85.59%), Postives = 108/111 (97.30%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGE 112
           EYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPGDSDIIKSLPG+
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGD 111

[Close]
BLAST of Carg16981 vs. TAIR 10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-51
Identity = 93/111 (83.78%), Postives = 105/111 (94.59%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGE 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPGDSDIIKS+PG+
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGD 111

[Close]
BLAST of Carg16981 vs. TAIR 10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 196.8 bits (499), Expect = 9.1e-51
Identity = 92/111 (82.88%), Postives = 106/111 (95.50%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVA KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGE 112
           EYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DPGDSDIIK+LPG+
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGD 111

The following BLAST results are available for this feature:
BLAST of Carg16981 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022960585.11.4e-56100.0060S ribosomal protein L30-like [Cucurbita moschata] >XP_022988235.1 60S ribosoma... [more]
XP_038878626.12.3e-5699.1160S ribosomal protein L30 [Benincasa hispida][more]
KAG6590249.14.0e-56100.0060S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022157366.16.8e-5699.1060S ribosomal protein L30 [Momordica charantia][more]
XP_022925483.12.0e-5597.3260S ribosomal protein L30 [Cucurbita moschata] >XP_022968625.1 60S ribosomal pro... [more]
BLAST of Carg16981 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O498848.3e-5794.5960S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1[more]
Q9M5M68.6e-5490.0960S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1[more]
Q9C8F74.0e-5185.59Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A P... [more]
Q8VZ191.5e-5083.7860S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1[more]
O485582.0e-5084.6860S ribosomal protein L30 OS=Zea mays OX=4577 GN=RPL30 PE=3 SV=1[more]
BLAST of Carg16981 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JJ116.6e-57100.0060S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111485536 PE=3 ... [more]
A0A6J1H9H76.6e-57100.0060S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111461321 PE=... [more]
A0A6J1DXV13.3e-5699.1060S ribosomal protein L30 OS=Momordica charantia OX=3673 GN=LOC111024087 PE=3 SV... [more]
A0A6J1HXQ49.5e-5697.3260S ribosomal protein L30 OS=Cucurbita maxima OX=3661 GN=LOC111467784 PE=3 SV=1[more]
A0A2N9FM199.5e-5697.30Ribosomal_L7Ae domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCU... [more]
BLAST of Carg16981 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G36240.12.8e-5285.59Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT1G77940.11.1e-5183.78Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT3G18740.19.1e-5182.88Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 13..105
e-value: 2.3E-24
score: 84.9
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 2..107
e-value: 3.9E-54
score: 182.8
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 13..106
NoneNo IPR availablePANTHERPTHR11449:SF2360S RIBOSOMAL PROTEIN L30coord: 1..112
IPR039109Ribosomal protein L30/YlxQPANTHERPTHR11449RIBOSOMAL PROTEIN L30coord: 1..112
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00709RIBOSOMAL_L30E_1coord: 24..48
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00993RIBOSOMAL_L30E_2coord: 80..100
IPR000231Ribosomal protein L30eHAMAPMF_00481Ribosomal_L30ecoord: 12..109
score: 21.396666

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16981-RACarg16981-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome