Carg16941 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16941
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	chaperonin-like RbcX protein 2, chloroplastic
Location	Carg_Chr10: 4831505 .. 4835193 (+)
RNA-Seq Expression	Carg16941
Synteny	Carg16941

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGAGCTTTATCCATCGTGGGTTCATCAGCGGTGGACTCTCATACTTCCCCATGTTTGTGTTTAGATGCTTTGCCCACAACGAGCAGTTCAATGGGTCGAAAGCGTTTGCCGAAACCAAAGCACTTGTATCTAAGCAGCTCGTTCGTAGATAGTGGCCGGGAGTGGCTGCTCTCGGCGGATAGGATAAGCAGGAGCTCAAGGAAGCAGCACAAGAACAGAAGACTTATAGTTGTTGATGAACTTGGGGGGCAATATGAAGATACCTTTGACGATGTTAAACTGGTAAGAACAGAAGACTTGTAGAGTGTTCTCTTGCTTAAACTGGTACGATAGCTTAGAGTAATAGCATTAGCACATCTGTTCTCTTGCTTGCTAGTGCTTTTGAAAAATTAAGCTAGCTAGAAAGTAACTTACCCGCTGAATTAGATCGATCAGTTGGTTGCTATGGACTGATTGCACGTAATGGGATTATCCTATTACTAGAATAACTTCCAATACACGGATTACAATTTTGACTGCTGAATAATCAATATAGTCCTCCCAAGGTATGGAATAGCAAGTCACATTAGTCAAACTTTGATTTTGATAAGTCGAGAACCGCATCATTCTGGCGGTTTCCAATATTACGTAGGAGTGAAAAACACCTTTCCATTGAATGAATGTTGGCATGGGGTTCTTTCAATTCCATTTTCATCTACTGAAAAGAGGGCCCGAAAGAGCTTACCGGATGCACCATCGACCGCAGACAGCTCAACTGCGAGAGTTTGACGCTAAAGTCGTTGGATGGGGTCAGGTGAGAAACCTTTGACCTTTTTTTTCTTTTTTTGCTGCGTCTATGATTAGGAGGCTTAGTCAGAAAGTGGGTTCGTGAACCATGTGCAGAGAGGGGGGCAAGGCTCCCATGGAGAACCAAACGTCTTCACTTGTGTAGAGTAGATCGTTCAACACCTGCAACACAAACTCATTTTTGACCTATTGGTCCTAGTATCATAGGCAGCTGCCATAACCACACTCGTAACTCAGTAAGATACACATGAAATACAACGGCCATCAGGTTGATGCATGGCAATGTTCTTTTAAATAACATGGGATATGCTTGAGACTTGAGTTTTCCATTGATTTTGTTTTGGTCAAGTTTAATATGATTTTGTTGTTTTTCCAGTTTCTTGAGCTTTATCCTTCTCCCATCCTTTGCATACTCATTTGCCTACAAATTAATTACTAAACTGACTGAGATTTCTCTGGCTGCAGCAAATACTTAATTATTTTACATACAAGGCTGTGAGGACTGTTATGAACCAGCTCTATGAAATGAATCCCCCACAGTACAGGTGGCTTTATGAGTAAGTGCCATCGTTTTTTACACATTGAGACTGGCCATTTTTCTGTGTTACAGGAACTGGAGTCAGTTTAGAAATAGTTGCAGTATTTTTTGTCATGGTAGCTCAAGTTGAAGCTGTCAAATTGTTCATGCTAGTTTGGTCGTGTTCTTGAATTTTGATCCTGTTCTATTCTTCTCCAACAGTTTTCTGTTATCTAACAAGCCATCAGATGGAAAACATTTCATGCGCACTCTTGTAAAGGTACTTCTTAAAAGTTCATACCTACTTCATGACTTGTACCAATCTATGCTTGGTACATGTTTTTCACTATTGGTTTTAGAGTATATTTTGGAATGATTTTGAAGGATTAAATCCATGTTTTTTAGTGATTTTGAATATGATACGGAAGATTTTAACCATTTCAAAATCACTCCCGAACGTTCCATTGAATTCTTACTATGACTGACTTGTTCTAACGATCTCATGTTTAACACCGGCTTTAGTTTTTAGCATTTTGCTATCTCAGTAGAAAGGGAAGGCCTAATATAAGCACACAGATGTTACAAAGTATGGTTAAATTGTGTATTTAGTTTCCATGCTTTAACTTCTAGTTTAGTTTACTTTTATAAGTTTCATTATAGTCTGTATCTTTTGATCAAACCTGCTACGAAGTAATATGAAATGCACCACATATCTACACATTCTTGAGTTATACACTCGAAAAATGGTTGTTCTAAGTGTATTCAATGCTCCATAACTTGCCAAGTTACACAAAGGCTTGTGTCCAAGTGTGGTCCTTTTGCTTGACACAAAGTTAGCTAAAATGATTCCTTTTACTTCTGAATCCAAACATTCCAGTTTGATGTTAGGACACAAAGATTTAAGGTCATTTACGGTCTCGAGGCACACCTTGTGAAATAGCGTTTTACTAAACCTGGATCATCATTTTTCTAATTGATAGGAAAAGCAAGATCTTGCTGAAAGAGTAATGATCACACGTCTCCACCTATATGGAAAATGGGTGAAGGTATTGCTATCATTGTAATGTTCCTTCAATACAGAAACTTTTTTTTTTTTCTTTTTTTTTTGGGAAGATCATGCAACAAAGTTTGCAAACATTTATTTCTTCTGTGGTGTAGAAATGTAACCATGCTGAAATATACCAAGAGATCTCGGACGAAAACGTAGAATTAATGCGTGAACGACTTATGCAGACTGTTATATGGCCTTCGGATGACACGAACACAGAGAAGATTGGCTAAGGAAGTATGGGTAATTTTGAGTTCTCTCTCCCTTGTCAATTCTCCTTGTATTGCATCCTTCAATCGTGATTAGTTTGATTGTTGAGTTGCCGATTGTATTCTTAGTTCAGTGAGGCAGTCTTTTTTTAGTTGAAGATATGTAAGCAATTAATCTTTATATTATGTAGAAAAGTTTATATATTCAGACTCCATTTCGGTTATTCTGATGGTATAGTGTAGGGCTGGGATTTTCTCAGAACTTGTGCTTCTATAAATCATGCATATTGGGATGAGATGGTACCAGAATGAGCAATAATGTGCAATTTACTGGTTGTTTCTTTGTTTGCACAGCTTGTTTAGCCTAATGGCCATTAAGATGTTTTCTTTAACTTGATTGTGCTTGATTGTGCTTGACTGTGCTTGATTTTGCCTGAGTTTTGAGATTCTTCAGTGAGTTATTCAGTATGACTTTGAGAATAACAGAAGTTTTCTTTAGTAATATGCAGAACAGAACTAATTGATTATTCAAGCAAGAGAAAGAGAACAGATTATAAGTCTATAAATCAGTCACTTTTCCAAAGATATTTTTTTAACTTGGCCAGTAGTTCTCAAAAGAAATTATTGAGCCACAAATTGCTCAAACCTCCTCCAAACCAAAGTGTTTTCTTCCCTAAAACATATCATACACACATACACCAAATAGATCAACAGATAAAAGATGCATTTACTCAAGTACTTTGCTAAATAGTTGTCAATAGAAGTAGGAAATCATGTTAGACCTACTTTGAACATCATAGAGCAAAACTTGAAATGAGAACGAAAGAAGACAGGGCAATGAAATTAATGAATTGTGATCAAAGCAAACACTAATTTTGTGTAAATATATCATTGAAGTCAATTCAACTGTAAAATGTACTATGTACCTCGAACATTGCATCTTTGTACACTGTAAAACAGAGCCCAGTGCGTTATTCCATCAACTATCCAGCACTTCAAACAAGCCACTTGGAGGATTCAACCATAGAAGGGGCCTGTCCATAATTATGACGAATCATTAGAGATTATGTTCTATTAATCAACAACAATACTCTAATTTAACCATCTGAAATTCTGCTGCCTC

mRNA sequence

ATGGTGGGAGCTTTATCCATCGTGGGTTCATCAGCGGTGGACTCTCATACTTCCCCATGTTTGTGTTTAGATGCTTTGCCCACAACGAGCAGTTCAATGGGTCGAAAGCGTTTGCCGAAACCAAAGCACTTGTATCTAAGCAGCTCGTTCGTAGATAGTGGCCGGGAGTGGCTGCTCTCGGCGGATAGGATAAGCAGGAGCTCAAGGAAGCAGCACAAGAACAGAAGACTTATAGTTGTTGATGAACTTGGGGGGCAATATGAAGATACCTTTGACGATGTTAAACTGGGCCCGAAAGAGCTTACCGGATGCACCATCGACCGCAGACAGCTCAACTGCGAGAGTTTGACGCTAAAGTCGTTGGATGGGGTCAGTTTTCTGTTATCTAACAAGCCATCAGATGGAAAACATTTCATGCGCACTCTTGTAAAGGAAAAGCAAGATCTTGCTGAAAGAGTAATGATCACACGTCTCCACCTATATGGAAAATGGGTGAAGATCATGCAACAAAGTTTGCAAACATTTATTTCTTCTGTGAAATGTAACCATGCTGAAATATACCAAGAGATCTCGGACGAAAACGTAGAATTAATGCGTGAACGACTTATGCAGACTGTTATATGGCCTTCGGATGACACGAACACAGAGAAGATTGGCTAAGGAAGTATGGGTAATTTTGAGTTCTCTCTCCCTTGTCAATTCTCCTTGTATTGCATCCTTCAATCGTGATTAGTTTGATTGTTGAGTTGCCGATTGTATTCTTAGTTCAGTGAGGCAGTCTTTTTTTAGTTGAAGATATGTAAGCAATTAATCTTTATATTATGTAGAAAAGTTTATATATTCAGACTCCATTTCGGTTATTCTGATGGTATAGTGTAGGGCTGGGATTTTCTCAGAACTTGTGCTTCTATAAATCATGCATATTGGGATGAGATGGTACCAGAATGAGCAATAATGTGCAATTTACTGGTTGTTTCTTTGTTTGCACAGCTTGTTTAGCCTAATGGCCATTAAGATGTTTTCTTTAACTTGATTGTGCTTGATTGTGCTTGACTGTGCTTGATTTTGCCTGAGTTTTGAGATTCTTCAGTGAGTTATTCAGTATGACTTTGAGAATAACAGAAGTTTTCTTTAGTAATATGCAGAACAGAACTAATTGATTATTCAAGCAAGAGAAAGAGAACAGATTATAAGTCTATAAATCAGTCACTTTTCCAAAGATATTTTTTTAACTTGGCCAGTAGTTCTCAAAAGAAATTATTGAGCCACAAATTGCTCAAACCTCCTCCAAACCAAAGTGTTTTCTTCCCTAAAACATATCATACACACATACACCAAATAGATCAACAGATAAAAGATGCATTTACTCAAGTACTTTGCTAAATAGTTGTCAATAGAAGTAGGAAATCATGTTAGACCTACTTTGAACATCATAGAGCAAAACTTGAAATGAGAACGAAAGAAGACAGGGCAATGAAATTAATGAATTGTGATCAAAGCAAACACTAATTTTGTGTAAATATATCATTGAAGTCAATTCAACTGTAAAATGTACTATGTACCTCGAACATTGCATCTTTGTACACTGTAAAACAGAGCCCAGTGCGTTATTCCATCAACTATCCAGCACTTCAAACAAGCCACTTGGAGGATTCAACCATAGAAGGGGCCTGTCCATAATTATGACGAATCATTAGAGATTATGTTCTATTAATCAACAACAATACTCTAATTTAACCATCTGAAATTCTGCTGCCTC

Coding sequence (CDS)

ATGGTGGGAGCTTTATCCATCGTGGGTTCATCAGCGGTGGACTCTCATACTTCCCCATGTTTGTGTTTAGATGCTTTGCCCACAACGAGCAGTTCAATGGGTCGAAAGCGTTTGCCGAAACCAAAGCACTTGTATCTAAGCAGCTCGTTCGTAGATAGTGGCCGGGAGTGGCTGCTCTCGGCGGATAGGATAAGCAGGAGCTCAAGGAAGCAGCACAAGAACAGAAGACTTATAGTTGTTGATGAACTTGGGGGGCAATATGAAGATACCTTTGACGATGTTAAACTGGGCCCGAAAGAGCTTACCGGATGCACCATCGACCGCAGACAGCTCAACTGCGAGAGTTTGACGCTAAAGTCGTTGGATGGGGTCAGTTTTCTGTTATCTAACAAGCCATCAGATGGAAAACATTTCATGCGCACTCTTGTAAAGGAAAAGCAAGATCTTGCTGAAAGAGTAATGATCACACGTCTCCACCTATATGGAAAATGGGTGAAGATCATGCAACAAAGTTTGCAAACATTTATTTCTTCTGTGAAATGTAACCATGCTGAAATATACCAAGAGATCTCGGACGAAAACGTAGAATTAATGCGTGAACGACTTATGCAGACTGTTATATGGCCTTCGGATGACACGAACACAGAGAAGATTGGCTAA

Protein sequence

MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLSADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLGPKELTGCTIDRRQLNCESLTLKSLDGVSFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKIMQQSLQTFISSVKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG

Homology

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BLAST of Carg16941 vs. NCBI nr
Match: XP_022960983.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 332.0 bits (850), Expect = 3.8e-87
Identity = 180/221 (81.45%), Postives = 182/221 (82.35%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60
           MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS
Sbjct: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60

Query: 61  ADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLGPKELTGCTIDRRQLN--CESLTL 120
           ADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKL           R  +N   E    
Sbjct: 61  ADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120

Query: 121 KSLDGVSFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKIMQQSLQTFISS 180
           +      FLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVK            
Sbjct: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVK------------ 180

Query: 181 VKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 220
            KCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 -KCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 208

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BLAST of Carg16941 vs. NCBI nr
Match: XP_022988213.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 330.1 bits (845), Expect = 1.5e-86
Identity = 178/221 (80.54%), Postives = 182/221 (82.35%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60
           MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS
Sbjct: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60

Query: 61  ADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLGPKELTGCTIDRRQLN--CESLTL 120
           ADRI+RSSRKQHKNRRLIVVDELGGQYEDTFDDVKL           R  +N   E    
Sbjct: 61  ADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120

Query: 121 KSLDGVSFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKIMQQSLQTFISS 180
           +      FLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVK            
Sbjct: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVK------------ 180

Query: 181 VKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 220
            KCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEK+G
Sbjct: 181 -KCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKLG 208

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BLAST of Carg16941 vs. NCBI nr
Match: XP_023515990.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.9 bits (842), Expect = 3.2e-86
Identity = 178/221 (80.54%), Postives = 181/221 (81.90%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60
           MVGALSIVGSSAVDSHTSPCLCLDALPTTS SMGRKRLPKPKHLYLSSSFVDSGREWLLS
Sbjct: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSCSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60

Query: 61  ADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLGPKELTGCTIDRRQLN--CESLTL 120
           ADRI+RSSRKQHKNRRLIVVDELGGQYEDTFDDVKL           R  +N   E    
Sbjct: 61  ADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120

Query: 121 KSLDGVSFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKIMQQSLQTFISS 180
           +      FLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVK            
Sbjct: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVK------------ 180

Query: 181 VKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 220
            KCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 -KCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 208

[Close]

BLAST of Carg16941 vs. NCBI nr
Match: XP_022926878.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata] >KAG7022086.1 Chaperonin-like RbcX protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 297.7 bits (761), Expect = 8.0e-77
Identity = 163/236 (69.07%), Postives = 177/236 (75.00%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTS-------------SSMGRKRLPKPKHLYLS 60
           MV  LS+VGSS VDSHTSPCLCLD LPTTS             +SMGRKRLPKPKHL LS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDSGREWLLSADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLGPKELTGCTID 120
           SSFVD+GREWLLSAD I+RSSRKQHKNRRL+V+DELGGQYEDTFDDVK+           
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RRQLN----CESLTLKSLDGVSFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGK 180
           R  +N        T + L    F+LSNKPSDGKHF+RTLVKE+QDLAERVMITRLHLYGK
Sbjct: 121 RTVMNQLYEMNPPTYRWL--YDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGK 180

Query: 181 WVKIMQQSLQTFISSVKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 220
           WVK             KCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 WVK-------------KCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of Carg16941 vs. NCBI nr
Match: KAG6588188.1 (Chaperonin-like RbcX protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 297.0 bits (759), Expect = 1.4e-76
Identity = 163/236 (69.07%), Postives = 176/236 (74.58%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTS-------------SSMGRKRLPKPKHLYLS 60
           MV  LS+VGSS VDSHTSPCLCLD LPTTS              SMGRKRLPKPKHL LS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMRKHSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDSGREWLLSADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLGPKELTGCTID 120
           SSFVD+GREWLLSAD I+RSSRKQHKNRRL+V+DELGGQYEDTFDDVK+           
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RRQLN----CESLTLKSLDGVSFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGK 180
           R  +N        T + L    F+LSNKPSDGKHF+RTLVKE+QDLAERVMITRLHLYGK
Sbjct: 121 RTVMNQLYEMNPPTYRWL--YDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGK 180

Query: 181 WVKIMQQSLQTFISSVKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 220
           WVK             KCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 WVK-------------KCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

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BLAST of Carg16941 vs. ExPASy Swiss-Prot
Match: Q8L9X2 (Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX2 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-41
Identity = 103/221 (46.61%), Postives = 138/221 (62.44%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60
           MV A  +VGS  +DS +SPCLCLDA  TT +   +K L K ++L L SSF  S   + LS
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDA-HTTGTIRRKKILGKARNLELGSSFTGSRIVFRLS 60

Query: 61  ADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVK------LGPKELTGCTIDRRQLNCE 120
             R+SR + ++ K + LIV +++ G Y+DTF DV+         K +        ++N  
Sbjct: 61  PKRVSRIANRKSK-KLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAVRTVLHQLYEMNPP 120

Query: 121 SLTLKSLDGVSFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKIMQQSLQT 180
             T       + +++N+P+DGK F+R L KE Q+LAERVMITRLHLYGKW+K        
Sbjct: 121 QYTW----FYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKWIK-------- 180

Query: 181 FISSVKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNT 216
                KC+H +IYQEISDEN+ LMRERLM+TVIWPSDDTN+
Sbjct: 181 -----KCDHGKIYQEISDENLALMRERLMETVIWPSDDTNS 202

[Close]

BLAST of Carg16941 vs. ExPASy TrEMBL
Match: A0A6J1HAK7 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111461620 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.8e-87
Identity = 180/221 (81.45%), Postives = 182/221 (82.35%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60
           MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS
Sbjct: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60

Query: 61  ADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLGPKELTGCTIDRRQLN--CESLTL 120
           ADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKL           R  +N   E    
Sbjct: 61  ADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120

Query: 121 KSLDGVSFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKIMQQSLQTFISS 180
           +      FLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVK            
Sbjct: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVK------------ 180

Query: 181 VKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 220
            KCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 -KCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 208

[Close]

BLAST of Carg16941 vs. ExPASy TrEMBL
Match: A0A6J1JLL9 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111485517 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 7.0e-87
Identity = 178/221 (80.54%), Postives = 182/221 (82.35%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60
           MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS
Sbjct: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60

Query: 61  ADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLGPKELTGCTIDRRQLN--CESLTL 120
           ADRI+RSSRKQHKNRRLIVVDELGGQYEDTFDDVKL           R  +N   E    
Sbjct: 61  ADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120

Query: 121 KSLDGVSFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKIMQQSLQTFISS 180
           +      FLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVK            
Sbjct: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVK------------ 180

Query: 181 VKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 220
            KCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEK+G
Sbjct: 181 -KCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKLG 208

[Close]

BLAST of Carg16941 vs. ExPASy TrEMBL
Match: A0A6J1EJF5 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433858 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.9e-77
Identity = 163/236 (69.07%), Postives = 177/236 (75.00%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTS-------------SSMGRKRLPKPKHLYLS 60
           MV  LS+VGSS VDSHTSPCLCLD LPTTS             +SMGRKRLPKPKHL LS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDSGREWLLSADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLGPKELTGCTID 120
           SSFVD+GREWLLSAD I+RSSRKQHKNRRL+V+DELGGQYEDTFDDVK+           
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RRQLN----CESLTLKSLDGVSFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGK 180
           R  +N        T + L    F+LSNKPSDGKHF+RTLVKE+QDLAERVMITRLHLYGK
Sbjct: 121 RTVMNQLYEMNPPTYRWL--YDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGK 180

Query: 181 WVKIMQQSLQTFISSVKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 220
           WVK             KCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 WVK-------------KCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of Carg16941 vs. ExPASy TrEMBL
Match: A0A6J1HZ31 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467533 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 8.6e-77
Identity = 163/236 (69.07%), Postives = 176/236 (74.58%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTS-------------SSMGRKRLPKPKHLYLS 60
           MV  LS+VGSS VDSHTSPCLCLD LPTTS              SMGRKRLPKPKHL LS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDILPTTSINLKSSGDFVMKKHSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDSGREWLLSADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLGPKELTGCTID 120
           SSFVD+GREWLLSAD I+RSSRKQHKNRRL+V+DELGGQYEDTFDDVK+           
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RRQLN----CESLTLKSLDGVSFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGK 180
           R  +N        T + L    F+LSNKPSDGKHF+RTLVKE+QDLAERVMITRLHLYGK
Sbjct: 121 RTVMNQLYEMNPPTYRWL--YDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGK 180

Query: 181 WVKIMQQSLQTFISSVKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 220
           WVK             KCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 WVK-------------KCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of Carg16941 vs. ExPASy TrEMBL
Match: A0A5D3D5P8 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00500 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 4.0e-74
Identity = 160/235 (68.09%), Postives = 173/235 (73.62%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTS--------------SSMGRKRLPKPKHLYL 60
           MVGALS+VGSS VDSHTSPCLCLDALPTTS               SMGR+RLPKPKHL L
Sbjct: 1   MVGALSMVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKYSMGRQRLPKPKHLDL 60

Query: 61  SSSFVDSGREWLLSADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLGPKELTGCTI 120
           SSSFVD+G EWLLS D I+RSSRKQ KNRRL+VVDELGGQYED FDDVK+          
Sbjct: 61  SSSFVDNGLEWLLSVDMINRSSRKQTKNRRLVVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 DRRQLN--CESLTLKSLDGVSFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKW 180
            R  +N   E    +      F+L+NKP+DGKHF+R LVKE+QDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKIMQQSLQTFISSVKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 220
           VK             KCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 VK-------------KCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of Carg16941 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 171.4 bits (433), Expect = 8.0e-43
Identity = 103/221 (46.61%), Postives = 138/221 (62.44%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60
           MV A  +VGS  +DS +SPCLCLDA  TT +   +K L K ++L L SSF  S   + LS
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDA-HTTGTIRRKKILGKARNLELGSSFTGSRIVFRLS 60

Query: 61  ADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVK------LGPKELTGCTIDRRQLNCE 120
             R+SR + ++ K + LIV +++ G Y+DTF DV+         K +        ++N  
Sbjct: 61  PKRVSRIANRKSK-KLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAVRTVLHQLYEMNPP 120

Query: 121 SLTLKSLDGVSFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKIMQQSLQT 180
             T       + +++N+P+DGK F+R L KE Q+LAERVMITRLHLYGKW+K        
Sbjct: 121 QYTW----FYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKWIK-------- 180

Query: 181 FISSVKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNT 216
                KC+H +IYQEISDEN+ LMRERLM+TVIWPSDDTN+
Sbjct: 181 -----KCDHGKIYQEISDENLALMRERLMETVIWPSDDTNS 202

The following BLAST results are available for this feature:

BLAST of Carg16941 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960983.1	3.8e-87	81.45	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata]	[more]
XP_022988213.1	1.5e-86	80.54	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita maxima]	[more]
XP_023515990.1	3.2e-86	80.54	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022926878.1	8.0e-77	69.07	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata] >KAG7022086.1...	[more]
KAG6588188.1	1.4e-76	69.07	Chaperonin-like RbcX protein 2, chloroplastic, partial [Cucurbita argyrosperma s...	[more]

BLAST of Carg16941 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9X2	1.1e-41	46.61	Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Carg16941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAK7	1.8e-87	81.45	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JLL9	7.0e-87	80.54	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EJF5	3.9e-77	69.07	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HZ31	8.6e-77	69.07	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A5D3D5P8	4.0e-74	68.09	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Carg16941 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19855.1	8.0e-43	46.61	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 118..216 e-value: 7.6E-19 score: 69.8
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 125..216
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 125..184 e-value: 8.2E-5 score: 22.8
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..95
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 126..219
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 1..95
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 126..219

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16941-RA	Carg16941-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006457	protein folding
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
molecular_function	GO:0044183	protein folding chaperone