Carg16925 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16925
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA-binding protein Y14-like
Location	Carg_Chr10: 4703553 .. 4707230 (+)
RNA-Seq Expression	Carg16925
Synteny	Carg16925

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTAGCGGGCAAATCAGAAACCCTTGATTCGATCCCCCAAAAAACCCCGACATCTTCTTCTCTTCCGCTTCCCCTCGCCATTTTGCAGAAGCGACGAACAGTTCCCAGAGACGTTGCTTAGCCATGGCGAGCGCTGATGTAGAGGCTGTTGACTTCGAGCCCGAGGAAGACGACCTCATGGACGAGGATGGAGCCGCCGAAGCCGATGCCTCTCCCCGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACCGGTGGCGCATCTTCCTCGCTGGCCGGTGGTCCAAAGAAGACCAAGGGTCGTGGATTTCGAGAAGAGTCTGATCGTAACACCCGCCTTACTGGGTCCGACTTCGATTCCCTCAAGTCTGCTGATGGCCCTGGCCCCCAACGATGTTAGTTTTACTCTTCTCTATTTCTACATCTCCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTAATTTACCTAGTTTTACAGATTTGGTTTTTCCACTTCGTTTTGCTGGTTTTTCCTTTCGTTCATTATAGCTAGGGTTGTGAAATTTTGGATGGTTATTTACTCGGTAGGTGGCGGGTTAGATGTATTATTATTATTATTACCATCTTAGGAAAGGAGGATAATCTTCTCAATTGGTTTAAGAATTAAGATCCTCTAATTTTGTAAGCCCTAGAGTTAACATTACAAGAACCTCCTTTACCAGTATGAATGTCGAAGCGAGGTAGCAACATGGATGGTGTTACAGATTCATGGTTCATTAGTTACATATTGTTTCTAAGAGGTAATTTGAGGTTGGTTTCCATTAAGCCTTTGGAGTTCGGGAGGATTTCTGGCTACTCATCTTAAAGGGAGTGTTCTCTTCTTTGTTGGTGGAAGAATAACCTTGTTTGCTGGGTTTTTTCAAATTACCTCACTCTTCCCCTTTTCTAAGCCCCTTCAAAAGTTATTTAGAAATTGGAGTTGGTTCAATTAGGTCATTCAAATGATCTTACCTAGTTTCTCCCCCTTGTTTGGCTTTCTGAGCATGTCCTTGGTACACTGTTGTGAACAACTAATGTTTCATTATGTGATATAAACAGTTCTAGAATAGTTCATATGGAGAGCAACAGATTCTCTAAGTAATACTACTTTGATTAATGTCTTATTCTAGTTAATTTGTGTAGCTATTGAAGGATGGATCATTCTGGTAACTGGTGTACATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATACGGAATTTGCATCTAAACCTCGATCGTCGTACTGGATTCGTCAAGGTATATTGGTTCCTATATTATTAAATTTTCCCTTACATAAACAATAATTTGTGCAGCTTTGTTTGTAATTAGAGAAAAGAAGAACATGCATGTATTTGCTTATTTTTTAGTTTTAAAAAGTAGAAAACTAGGAGATTTTTGGAGGAACTAAAATAAAAATTTCATATTTTGCTAATGATCAGATGGTCTGTAAGAAGAATGAACTGGTATTGCAGAATTTATTTTTTTATATTTGAAAACATTTTTTTTTATTCGTTTATTCTCCTTTGAAAGCATGATAAATTGTTTTATTCTTCAATAAGTTGTACCAAATAGTTCCCCACCCTTTCATGTCTATTCTCTTTTATCAAGTCAACCCATTGGGGGCAATTCTTTTCAAGCTCCATTTGATCTTGTTTATATCATCTTTCTTGATTGAAACTAAGGGCATTCCTTATGAAAATCAATTATTCAATGGAGTAGAAAAGGGCAACCTGAGTACAGCTCAAGTGGCAACTATATTATGGTTTGCAAGTTTGAACCCCTACCTTCTTCTTTGCAATATAAGGAAATTGAAGGCGAGTTTCTTGATTTCTATGCCAAAGTATATACTAGAGATGACTATCGACGGCTTTTGCCTACAAATGTGGATTGGAGTCCAATTTCTGGGAAACAAGCGCTTGTTTTAGAAGCGCCTTTTAACTCTTTGGGGAAAAACTAAACTTCGAGTCCAGATGGTTCTACAATTGGATTTTTCGAACATATTGGAAAGTTATCAAATCTGACATTGTGGCCATGTTCCTGGATTTCTATAATTCTAGTGTTATAAATGTGTCTCACAATCCTACATATTTGTTTAATCCCAAAGAAGTCAGATGTGCATGCTTATGGGTCTTATAGTCTCAGACTAATAGGAGCTCCAGAAGCGTTCGATTAAAGGAGTCTGCCTTTTCCTTTGAACGACACCGTGAAGGGACTTTGGGGGAGCCACTCTGCACCATTTCTTTTAGGATCATCTGGACTTCGAAACCACTTTTCTTCAGTCCTTGTGATGCTCATATTTGTTGCTTGTTGTTCTAAGAATTCACAATATTATGAAATGTTTCCTGCGACTGGATTAAAGTAAACCTAATCTGAAGGCCAGTTGACAAGCTTCTGTATAGCCCTTCTCTTTTGCACTTGCATATCTCTCATTGAAAGTTTGTTTCTTGTCACAAAGTATAAAATAGCGGAGTATACTGCTTTACCAGTGATAATTTCTTTATAACATCATCATCATCATCATTCCCTTGCTATGTTATAACCATGTATTTATGTTCCCAACCAGCCTCAATTTTTGTCAAATGAATGCCATGTTTCGTTACAGACATAGTCATGATATGAACGGACCGCAAGCATATCATATTGTTTTAGCACATTCATATTTATGTCACGTTGGTTGAGTTTTGTCTGAGAATATATGTGTAACTATTTCCTTTCTTATCCATATTTGGAAGTATTTATTCGTTTGTATAGAGAACAGTCTGTATATTATAATAATATGTTTTAACATAGTTTTTTCGTGGAAGAAGCATAAGCATTACACTTTGAGACCTGAACTATTTTGGGCATAGATGTTGTGTAGGCAATCTTCTTATTTAAGTGGCAGCAGTAGGAGCTATAAATAGATACGCTAAGTTGTATTCTAACTTTATATCTTGAAATAATTGATGAAACTACCATTTGGGTTTCCATTATATCTCATCTATTATCGGCTATTGACTATTGTTCTATTGTTACTATTTTATATAAATTTTCTGAATTTTTTATTTTGGGTTTGTCAAGGGATATGCGTTGATCGAATACGAGAACTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGGTCTGAACTTCTGACCCAAATTATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGGAGGAAGAACACAAGGTATGCTTCTCCTAGATCACTGAATGTTTGGTTTGCATTGTAGGAAATTCATGAACCAACCACATGTATCTTTTTTTTCCTAATTTAATTGCTGCAGGCCTACTCGGGAACGACGCTCAAGGAGTCCTAGGAGGAGATATTAGTCTTGAGGTGAAGGAACTTCATGTGTGGTGTTTATGGATTTTAATTGGAAATGAGTTTTTGTTGTGGAATGGATTAGAAGATGTTTCTACTGAGCTCTACTCGTTGTCTCGAGATTTCCCATGGTTTCCAGCCTTTCTTTCTCGGACGTTGTTTTGGGTTGATTTATGTAACTTAGAAGATTTGAGGTTCATGATTCTCTTTTTTTTTCCTTCTTTTGAGTACTTGAGGTTTATGCCTTAATTGTGTTGAATATCATCTGCTATATTATATAATATTTTTTTGTTCC

mRNA sequence

GGTTAGCGGGCAAATCAGAAACCCTTGATTCGATCCCCCAAAAAACCCCGACATCTTCTTCTCTTCCGCTTCCCCTCGCCATTTTGCAGAAGCGACGAACAGTTCCCAGAGACGTTGCTTAGCCATGGCGAGCGCTGATGTAGAGGCTGTTGACTTCGAGCCCGAGGAAGACGACCTCATGGACGAGGATGGAGCCGCCGAAGCCGATGCCTCTCCCCGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACCGGTGGCGCATCTTCCTCGCTGGCCGGTGGTCCAAAGAAGACCAAGGGTCGTGGATTTCGAGAAGAGTCTGATCGTAACACCCGCCTTACTGGGTCCGACTTCGATTCCCTCAAGTCTGCTGATGGCCCTGGCCCCCAACGATCTATTGAAGGATGGATCATTCTGGTAACTGGTGTACATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATACGGAATTTGCATCTAAACCTCGATCGTCGTACTGGATTCGTCAAGGGATATGCGTTGATCGAATACGAGAACTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGGTCTGAACTTCTGACCCAAATTATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGGAGGAAGAACACAAGGCCTACTCGGGAACGACGCTCAAGGAGTCCTAGGAGGAGATATTAGTCTTGAGGTGAAGGAACTTCATGTGTGGTGTTTATGGATTTTAATTGGAAATGAGTTTTTGTTGTGGAATGGATTAGAAGATGTTTCTACTGAGCTCTACTCGTTGTCTCGAGATTTCCCATGGTTTCCAGCCTTTCTTTCTCGGACGTTGTTTTGGGTTGATTTATGTAACTTAGAAGATTTGAGGTTCATGATTCTCTTTTTTTTTCCTTCTTTTGAGTACTTGAGGTTTATGCCTTAATTGTGTTGAATATCATCTGCTATATTATATAATATTTTTTTGTTCC

Coding sequence (CDS)

ATGGCGAGCGCTGATGTAGAGGCTGTTGACTTCGAGCCCGAGGAAGACGACCTCATGGACGAGGATGGAGCCGCCGAAGCCGATGCCTCTCCCCGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACCGGTGGCGCATCTTCCTCGCTGGCCGGTGGTCCAAAGAAGACCAAGGGTCGTGGATTTCGAGAAGAGTCTGATCGTAACACCCGCCTTACTGGGTCCGACTTCGATTCCCTCAAGTCTGCTGATGGCCCTGGCCCCCAACGATCTATTGAAGGATGGATCATTCTGGTAACTGGTGTACATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATACGGAATTTGCATCTAAACCTCGATCGTCGTACTGGATTCGTCAAGGGATATGCGTTGATCGAATACGAGAACTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGGTCTGAACTTCTGACCCAAATTATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGGAGGAAGAACACAAGGCCTACTCGGGAACGACGCTCAAGGAGTCCTAGGAGGAGATATTAG

Protein sequence

MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGRGFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRSRSPRRRY

Homology

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BLAST of Carg16925 vs. NCBI nr
Match: XP_022961208.1 (RNA-binding protein Y14-like [Cucurbita moschata] >XP_023516370.1 RNA-binding protein Y14-like [Cucurbita pepo subsp. pepo] >KAG6590187.1 RNA-binding protein Y14, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023840.1 RNA-binding protein Y14 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 383.6 bits (984), Expect = 9.9e-103
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           NTRPTRERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]

BLAST of Carg16925 vs. NCBI nr
Match: XP_022988215.1 (RNA-binding protein Y14A-like [Cucurbita maxima])

HSP 1 Score: 379.8 bits (974), Expect = 1.4e-101
Identity = 195/197 (98.98%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASP APFPKLKSAITGGASSSLAGGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPLAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRQESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           NTRPTRERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]

BLAST of Carg16925 vs. NCBI nr
Match: XP_038880227.1 (RNA-binding protein Y14A [Benincasa hispida])

HSP 1 Score: 373.2 bits (957), Expect = 1.3e-99
Identity = 190/197 (96.45%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG+FGE
Sbjct: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGDFGE 120

Query: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           NTRP RERRSRSPRRRY
Sbjct: 181 NTRPARERRSRSPRRRY 197

[Close]

BLAST of Carg16925 vs. NCBI nr
Match: XP_004139049.1 (RNA-binding protein Y14 [Cucumis sativus] >XP_008450386.1 PREDICTED: RNA-binding protein 8A-B [Cucumis melo] >KGN66511.1 hypothetical protein Csa_007313 [Cucumis sativus])

HSP 1 Score: 372.5 bits (955), Expect = 2.3e-99
Identity = 190/197 (96.45%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+GGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           N RP RERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]

BLAST of Carg16925 vs. NCBI nr
Match: XP_022154366.1 (RNA-binding protein Y14A [Momordica charantia])

HSP 1 Score: 369.8 bits (948), Expect = 1.5e-98
Identity = 191/197 (96.95%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA GPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA-GPKKTKGR 60

Query: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAE+AISAMDGSELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           NTRPTRERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 196

[Close]

BLAST of Carg16925 vs. ExPASy Swiss-Prot
Match: B7FAL5 (RNA-binding protein Y14A OS=Oryza sativa subsp. japonica OX=39947 GN=Y14A PE=1 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-64
Identity = 136/205 (66.34%), Postives = 163/205 (79.51%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAG--GPKKTK 60
           + +ADVEAVDF+P++DDLMDED    AD +P AP P+L+S I GG      G  G +KTK
Sbjct: 4   VTNADVEAVDFDPDDDDLMDEDA---ADPTP-APAPRLRSTIAGGGGGGGGGDDGQRKTK 63

Query: 61  GRGFREE-SDRNTRLTG----SDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQN 120
           GRGFR++ + R++RL G    SDFDSL S  GPGP RSIEGWI+LVTGVHEEAQEDDL N
Sbjct: 64  GRGFRDDAAPRDSRLAGAGRASDFDSLGSDGGPGPVRSIEGWIVLVTGVHEEAQEDDLHN 123

Query: 121 AFGEFGEIRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFS 180
            F +FG+++NLHLNLDRRTGFVKGYALIEYE FEEA+ AI A+DG+ELLTQII+VDWAFS
Sbjct: 124 IFRDFGQVKNLHLNLDRRTGFVKGYALIEYETFEEAQAAIKALDGTELLTQIISVDWAFS 183

Query: 181 HGPIRRKNTRPTRERRSRS-PRRRY 198
           +GP++R+N R    RRSRS PRRRY
Sbjct: 184 NGPVKRRNIRKRSPRRSRSPPRRRY 204

[Close]

BLAST of Carg16925 vs. ExPASy Swiss-Prot
Match: F4I9J7 (RNA-binding protein Y14 OS=Arabidopsis thaliana OX=3702 GN=Y14 PE=1 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-64
Identity = 139/206 (67.48%), Postives = 161/206 (78.16%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAA--EADASPRAPFPKLKSAITGGASSSLAGGPKKTK 60
           MA+ + EAVDFEPEEDDLMDE+G A   AD SPRA  P+LKSAI G    S     KKTK
Sbjct: 1   MANIESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGES----AKKTK 60

Query: 61  GRGFREE--SDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG 120
           GRGFREE  SDR  RL+  DF+SL S   PGPQRS+EGWIILV+GVHEE QE+D+ NAFG
Sbjct: 61  GRGFREEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFG 120

Query: 121 EFGEIRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGP 180
           +FGEI+NL+LNLDRR+G+VKGYALIEYE  EEA+ AISAM+G+ELLTQ ++VDWAFS GP
Sbjct: 121 DFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGP 180

Query: 181 -----IRRKNTRPTRERRSRSPRRRY 198
                 RRKN+R  R +RSRSPRRRY
Sbjct: 181 SGGESYRRKNSRYGRSQRSRSPRRRY 202

[Close]

BLAST of Carg16925 vs. ExPASy Swiss-Prot
Match: Q6ATR0 (RNA-binding protein Y14B OS=Oryza sativa subsp. japonica OX=39947 GN=Y14B PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.1e-39
Identity = 98/203 (48.28%), Postives = 130/203 (64.04%), Query Frame = 0


Query: 2   ASADVEAVDF---EPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTK 61
           A+ DVE VD+   E EE+D MDED           P P + S            G  +++
Sbjct: 4   AAEDVEFVDYDRDEEEEEDAMDEDDRGGGRGGRALPVPHIVSQ-----------GVMRSR 63

Query: 62  GRGFREESDRNTRLTGSD---FDSLKSADGP--GPQRSIEGWIILVTGVHEEAQEDDLQN 121
           GR       R+T +  S+   FDSL  A  P  GPQRSIEGWI+LV+GV E+A+EDDL N
Sbjct: 64  GRLL----GRSTSVLASNRDRFDSLADAGNPGHGPQRSIEGWILLVSGVKEDAEEDDLYN 123

Query: 122 AFGEFGEIRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFS 181
            F +FG +++LHLNL+RRTG+ KGYAL+EYE+FEEA+ AI AM+G++LLT+ + VDWAFS
Sbjct: 124 TFSDFGHVKDLHLNLERRTGYAKGYALVEYESFEEAQTAIKAMNGTQLLTRTVYVDWAFS 183

Query: 182 HGPIRRKNTRPTRERRSRSPRRR 197
            GPI++  +     RRSR+P RR
Sbjct: 184 RGPIQKLTSTRPLHRRSRTPPRR 191

[Close]

BLAST of Carg16925 vs. ExPASy Swiss-Prot
Match: Q6PH90 (RNA-binding protein 8A-B OS=Xenopus laevis OX=8355 GN=rbm8a-b PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-38
Identity = 81/143 (56.64%), Postives = 105/143 (73.43%), Query Frame = 0


Query: 55  KKTKGRGFREESDRNTRLTGSDFDSL-KSADGPGPQRSIEGWIILVTGVHEEAQEDDLQN 114
           KK KGRGF  +    TR+   D+DS+ +  D PGPQRS+EGWI+ VTGVHEEA E+D+ +
Sbjct: 33  KKRKGRGFGADEGTRTRIR-EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHD 92

Query: 115 AFGEFGEIRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFS 174
            FGEFGEI+N+HLNLDRRTGF+KGYAL+EYE ++EA  A+  ++G +L+ Q ++VDW F 
Sbjct: 93  KFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFV 152

Query: 175 HGPIRRKNTRPTRERRSRSPRRR 197
            GP   K  R +  RRSRSP RR
Sbjct: 153 RGP--PKGKRRSGRRRSRSPERR 172

[Close]

BLAST of Carg16925 vs. ExPASy Swiss-Prot
Match: Q28BZ1 (RNA-binding protein 8A OS=Xenopus tropicalis OX=8364 GN=rbm8a PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.0e-38
Identity = 81/143 (56.64%), Postives = 104/143 (72.73%), Query Frame = 0


Query: 55  KKTKGRGFREESDRNTRLTGSDFDSL-KSADGPGPQRSIEGWIILVTGVHEEAQEDDLQN 114
           KK KGRGF  +     R+   D+DS+ +  D PGPQRS+EGWI+ VTGVHEEA E+D+ +
Sbjct: 33  KKRKGRGFGADEGTRARIR-EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHD 92

Query: 115 AFGEFGEIRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFS 174
            FGEFGEI+N+HLNLDRRTGF+KGYAL+EYE ++EA  A+  ++G +L+ Q I+VDW F 
Sbjct: 93  KFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPISVDWGFV 152

Query: 175 HGPIRRKNTRPTRERRSRSPRRR 197
            GP   K  R +  RRSRSP RR
Sbjct: 153 RGP--PKGKRRSGRRRSRSPERR 172

[Close]

BLAST of Carg16925 vs. ExPASy TrEMBL
Match: A0A6J1HB67 (RNA-binding protein Y14-like OS=Cucurbita moschata OX=3662 GN=LOC111461789 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 4.8e-103
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           NTRPTRERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]

BLAST of Carg16925 vs. ExPASy TrEMBL
Match: A0A6J1JIZ0 (RNA-binding protein Y14A-like OS=Cucurbita maxima OX=3661 GN=LOC111485519 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 7.0e-102
Identity = 195/197 (98.98%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASP APFPKLKSAITGGASSSLAGGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPLAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRQESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           NTRPTRERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]

BLAST of Carg16925 vs. ExPASy TrEMBL
Match: A0A0A0M2V3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G616290 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.1e-99
Identity = 190/197 (96.45%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+GGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           N RP RERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]

BLAST of Carg16925 vs. ExPASy TrEMBL
Match: A0A1S3BNH9 (RNA-binding protein 8A-B OS=Cucumis melo OX=3656 GN=LOC103492008 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.1e-99
Identity = 190/197 (96.45%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+GGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           N RP RERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]

BLAST of Carg16925 vs. ExPASy TrEMBL
Match: A0A6J1DNH7 (RNA-binding protein Y14A OS=Momordica charantia OX=3673 GN=LOC111021647 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 7.2e-99
Identity = 191/197 (96.95%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA GPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA-GPKKTKGR 60

Query: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAE+AISAMDGSELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           NTRPTRERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 196

[Close]

BLAST of Carg16925 vs. TAIR 10
Match: AT1G51510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 247.7 bits (631), Expect = 7.9e-66
Identity = 139/206 (67.48%), Postives = 161/206 (78.16%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAA--EADASPRAPFPKLKSAITGGASSSLAGGPKKTK 60
           MA+ + EAVDFEPEEDDLMDE+G A   AD SPRA  P+LKSAI G    S     KKTK
Sbjct: 1   MANIESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGES----AKKTK 60

Query: 61  GRGFREE--SDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG 120
           GRGFREE  SDR  RL+  DF+SL S   PGPQRS+EGWIILV+GVHEE QE+D+ NAFG
Sbjct: 61  GRGFREEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFG 120

Query: 121 EFGEIRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGP 180
           +FGEI+NL+LNLDRR+G+VKGYALIEYE  EEA+ AISAM+G+ELLTQ ++VDWAFS GP
Sbjct: 121 DFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGP 180

Query: 181 -----IRRKNTRPTRERRSRSPRRRY 198
                 RRKN+R  R +RSRSPRRRY
Sbjct: 181 SGGESYRRKNSRYGRSQRSRSPRRRY 202

[Close]

BLAST of Carg16925 vs. TAIR 10
Match: AT3G11400.1 (eukaryotic translation initiation factor 3G1 )

HSP 1 Score: 58.2 bits (139), Expect = 8.9e-09
Identity = 26/91 (28.57%), Postives = 53/91 (58.24%), Query Frame = 0


Query: 81  KSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIRNLHLNLDRRTGFVKGYAL 140
           +SA G   +R  +   + VT + E+ +E DL   F  FG +  +++ +D++TG  +G+  
Sbjct: 199 RSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGF 258

Query: 141 IEYENFEEAEKAISAMDGSELLTQIINVDWA 172
           + + + E+A++AI+ ++G      I+ V+WA
Sbjct: 259 VNFVSREDAQRAINKLNGYGYDNLILRVEWA 289

[Close]

BLAST of Carg16925 vs. TAIR 10
Match: AT3G11400.2 (eukaryotic translation initiation factor 3G1 )

HSP 1 Score: 58.2 bits (139), Expect = 8.9e-09
Identity = 26/91 (28.57%), Postives = 53/91 (58.24%), Query Frame = 0


Query: 81  KSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIRNLHLNLDRRTGFVKGYAL 140
           +SA G   +R  +   + VT + E+ +E DL   F  FG +  +++ +D++TG  +G+  
Sbjct: 226 RSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGF 285

Query: 141 IEYENFEEAEKAISAMDGSELLTQIINVDWA 172
           + + + E+A++AI+ ++G      I+ V+WA
Sbjct: 286 VNFVSREDAQRAINKLNGYGYDNLILRVEWA 316

[Close]

BLAST of Carg16925 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-08
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 87  GPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIRNLHLNLDRRTGFVKGYALIEYENF 146
           GP    + + +LV  +      DDL   F ++G++ ++ +  DRRTG  +G+A + Y+  
Sbjct: 8   GPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK 67

Query: 147 EEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTR--------PTRERRSRSPRR 196
           +EA KA+  +DG  +  + I V +A  +GP   K ++         +R  RSRSPRR
Sbjct: 68  DEAHKAVERLDGRVVDGREITVQFA-KYGPNAEKISKGRVVEPPPKSRRSRSRSPRR 123

[Close]

BLAST of Carg16925 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-08
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 87  GPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIRNLHLNLDRRTGFVKGYALIEYENF 146
           GP    + + +LV  +      DDL   F ++G++ ++ +  DRRTG  +G+A + Y+  
Sbjct: 8   GPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK 67

Query: 147 EEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTR--------PTRERRSRSPRR 196
           +EA KA+  +DG  +  + I V +A  +GP   K ++         +R  RSRSPRR
Sbjct: 68  DEAHKAVERLDGRVVDGREITVQFA-KYGPNAEKISKGRVVEPPPKSRRSRSRSPRR 123

The following BLAST results are available for this feature:

BLAST of Carg16925 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961208.1	9.9e-103	100.00	RNA-binding protein Y14-like [Cucurbita moschata] >XP_023516370.1 RNA-binding pr...	[more]
XP_022988215.1	1.4e-101	98.98	RNA-binding protein Y14A-like [Cucurbita maxima]	[more]
XP_038880227.1	1.3e-99	96.45	RNA-binding protein Y14A [Benincasa hispida]	[more]
XP_004139049.1	2.3e-99	96.45	RNA-binding protein Y14 [Cucumis sativus] >XP_008450386.1 PREDICTED: RNA-binding...	[more]
XP_022154366.1	1.5e-98	96.95	RNA-binding protein Y14A [Momordica charantia]	[more]

BLAST of Carg16925 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B7FAL5	1.1e-64	66.34	RNA-binding protein Y14A OS=Oryza sativa subsp. japonica OX=39947 GN=Y14A PE=1 S...	[more]
F4I9J7	1.1e-64	67.48	RNA-binding protein Y14 OS=Arabidopsis thaliana OX=3702 GN=Y14 PE=1 SV=1	[more]
Q6ATR0	2.1e-39	48.28	RNA-binding protein Y14B OS=Oryza sativa subsp. japonica OX=39947 GN=Y14B PE=1 S...	[more]
Q6PH90	1.4e-38	56.64	RNA-binding protein 8A-B OS=Xenopus laevis OX=8355 GN=rbm8a-b PE=2 SV=1	[more]
Q28BZ1	4.0e-38	56.64	RNA-binding protein 8A OS=Xenopus tropicalis OX=8364 GN=rbm8a PE=2 SV=1	[more]

BLAST of Carg16925 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HB67	4.8e-103	100.00	RNA-binding protein Y14-like OS=Cucurbita moschata OX=3662 GN=LOC111461789 PE=4 ...	[more]
A0A6J1JIZ0	7.0e-102	98.98	RNA-binding protein Y14A-like OS=Cucurbita maxima OX=3661 GN=LOC111485519 PE=4 S...	[more]
A0A0A0M2V3	1.1e-99	96.45	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G616290 PE=4 SV...	[more]
A0A1S3BNH9	1.1e-99	96.45	RNA-binding protein 8A-B OS=Cucumis melo OX=3656 GN=LOC103492008 PE=4 SV=1	[more]
A0A6J1DNH7	7.2e-99	96.95	RNA-binding protein Y14A OS=Momordica charantia OX=3673 GN=LOC111021647 PE=4 SV=...	[more]

BLAST of Carg16925 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51510.1	7.9e-66	67.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G11400.1	8.9e-09	28.57	eukaryotic translation initiation factor 3G1	[more]
AT3G11400.2	8.9e-09	28.57	eukaryotic translation initiation factor 3G1	[more]
AT5G64200.1	1.5e-08	31.62	ortholog of human splicing factor SC35	[more]
AT5G64200.2	1.5e-08	31.62	ortholog of human splicing factor SC35	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008111	RNA-binding motif protein 8	PRINTS	PR01738	RNABINDINGM8	coord: 51..63 score: 50.77 coord: 86..100 score: 79.33 coord: 160..172 score: 55.38 coord: 142..158 score: 44.12
IPR008111	RNA-binding motif protein 8	PANTHER	PTHR45894	RNA-BINDING PROTEIN 8A	coord: 2..197
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 96..169 e-value: 4.0E-19 score: 79.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 97..161 e-value: 2.0E-15 score: 56.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 95..173 score: 15.834971
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..190 e-value: 1.3E-29 score: 105.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..197
None	No IPR available	PANTHER	PTHR45894:SF6	RNA-BINDING PROTEIN Y14A-LIKE	coord: 2..197
IPR033744	RBM8, RNA recognition motif	CDD	cd12324	RRM_RBM8	coord: 89..176 e-value: 5.06715E-60 score: 180.491
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 88..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16925-RA	Carg16925-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008380	RNA splicing
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0035145	exon-exon junction complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding