Carg16862 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16862
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr19: 367704 .. 369602 (+)
RNA-Seq ExpressionCarg16862
SyntenyCarg16862
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAATAACTCATGCTTGTTCACAGTGTCATATAATGTACGCCGGCATGTTTGCTTTTGCTATCTGTACGTTTATGACAATCTTGCATCCTCTTTGTTGGCATCTGTGTGTGTCTATTTCTCTTGTACGGCACGGCGTTCAGCCCCTTTGATTTCCTTAATTGTGTTGTGGTTTTTATATTCCACCTCTGCAAACTGTTTTATCCTTGAGAAGCATCGGTAATTATATTTGAATTGATTACACAATTTTCCTCTTTCCTTCAGAGCGATAAATTGAAGCCAGAATTTCTCCATCGAAATATTACATTTTCCATGTGGCCAAACCCCAGAATGTTTGAGGAGAGCCTATCATCCTACAACCTTGGCAGGGAGCTGCTTCATATTCCCCATGGAATAACCTGGAAAATTTCTCCCTAATATCCCCCACGAGATACGAGATGGTTTGTTGTAAGTCCATATTCTCATTTATTTTGGTTATTAACTCTTATTTAGTTCATAACCATTTTGGTTCATATTTTATATTTTTTATTCATATATGTGCATTAATATTGGTATGCCTATATAAAAGTTTGTCTAGCATTGTTTTGAGACATGGACCCATTACCATTTTGTATTTGCTTAGAGATAATTGGGAGAAACTTTGTTGAGAGACTTTTCCGTGTGAGAGATACACTTGTAAACACTTTGTTATAATGACTGGCTTAACTTAGGGATGTAGGAGAATTTTCTCTCTGAACCATGTAAATCTTTGTCCCTTTGTTTAATTTCTGTTTGTGGGTGTGTGAGTGCGATCGATCTTGCTTCTGCTTTCGCTACAACAATCGGATAGTAGAGCATTGAAGGTTGTGACATTAGGATATTTCTCAATGGGTTAATAGGAGGAAAATGTTTTCTTTAGCCATTGAATTCTCTATTTGCTTTGCGGATGGTTTTCATATGAGCCATCATGACAAATAATAGGCTTCACATGAGGGTAATGGTTTGAATTGTTATCTAGTTATTACCAATCTTCAATAGTTTCAAGCGGTACACGCATCACCTATGGTACGGGTTGTCTAGGTAGACTGCAAGCTGCCATATGGATTGCTTAGAGCTTGTGTTATTTACTACCTCATCATTGTAACCAGTTGGTAGTTAAGGTCTCATGGGTACATGGGTAGGATTTGGTGACTTAACGGCGAAGCCTCAAAAGTTGGCTAGCTTCTTGTGATTGGTTTAGTCGGTATTTTATCAGGTTTATCTTTAGTTGGTAATTCTTTTTGCATATTCTCTCTTTTGTTCTTCATGTTTTTCATTTAGATTGAGCGTGTAGATCCTTGATCCTAACAATTTTGGAATGATTTTAATATTTTTAAAACCACTTCAAACAATAATATTTTTCAGATCTCTATTCTTGTTCGATGATGCCTAAAATGATGAATATGGAGGGGACAAGAAGTTTGATGTTCATGGTAACATTTCATGATTTTCATCCCTCTGTTGCTCTCAATCATTAATTTTGAATCTGTTGTCTAGAGAAAAAACATGAACACGAAGCATTTTGTCTTCTGCAGAAAGAAAAAGAAAAAAAAAAATTATTTCTGTATTGTTTTGTTGTAGGAAAATGGAGAAGAAACTGTTATTTTTCAGATGGGATGATGTCAAACTTGAAATGATGAAAAAGTTTGGTTCACAAAATGCCATGAATTCTGTTAGGGTTCGTAGATTCGTGCAATTGTTTTCATTGATCTACGATAAACTAATCTGGTCATCCTATTCACAGCGACCTAATTTCTATACAAGTTGTATCACTGCATTTGTTCAGTCGGGTTGTCAAAGGGTGATTTATGCTAACATGACCGGAACTGGAGTCTCAGATTTTGCAGTTTCATGGCTACATATTCAGTCAAGCACATGA

mRNA sequence

ATGAGCGATAAATTGAAGCCAGAATTTCTCCATCGAAATATTACATTTTCCATGTGGCCAAACCCCAGAATGAAAATGGAGAAGAAACTGTTATTTTTCAGATGGGATGATGTCAAACTTGAAATGATGAAAAAGTTTGGTTCACAAAATGCCATGAATTCTGTTAGGGTTCGTAGATTCGTGCAATTGTTTTCATTGATCTACGATAAACTAATCTGGTCATCCTATTCACAGCGACCTAATTTCTATACAAGTTGTATCACTGCATTTGTTCAGTCGGGTTGTCAAAGGGTGATTTATGCTAACATGACCGGAACTGGAGTCTCAGATTTTGCAGTTTCATGGCTACATATTCAGTCAAGCACATGA

Coding sequence (CDS)

ATGAGCGATAAATTGAAGCCAGAATTTCTCCATCGAAATATTACATTTTCCATGTGGCCAAACCCCAGAATGAAAATGGAGAAGAAACTGTTATTTTTCAGATGGGATGATGTCAAACTTGAAATGATGAAAAAGTTTGGTTCACAAAATGCCATGAATTCTGTTAGGGTTCGTAGATTCGTGCAATTGTTTTCATTGATCTACGATAAACTAATCTGGTCATCCTATTCACAGCGACCTAATTTCTATACAAGTTGTATCACTGCATTTGTTCAGTCGGGTTGTCAAAGGGTGATTTATGCTAACATGACCGGAACTGGAGTCTCAGATTTTGCAGTTTCATGGCTACATATTCAGTCAAGCACATGA

Protein sequence

MSDKLKPEFLHRNITFSMWPNPRMKMEKKLLFFRWDDVKLEMMKKFGSQNAMNSVRVRRFVQLFSLIYDKLIWSSYSQRPNFYTSCITAFVQSGCQRVIYANMTGTGVSDFAVSWLHIQSST
Homology
[Close]
BLAST of Carg16862 vs. NCBI nr
Match: KAG7011252.1 (hypothetical protein SDJN02_26156, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.7 bits (644), Expect = 1.6e-63
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 1   MSDKLKPEFLHRNITFSMWPNPRMKMEKKLLFFRWDDVKLEMMKKFGSQNAMNSVRVRRF 60
           MSDKLKPEFLHRNITFSMWPNPRMKMEKKLLFFRWDDVKLEMMKKFGSQNAMNSVRVRRF
Sbjct: 1   MSDKLKPEFLHRNITFSMWPNPRMKMEKKLLFFRWDDVKLEMMKKFGSQNAMNSVRVRRF 60

Query: 61  VQLFSLIYDKLIWSSYSQRPNFYTSCITAFVQSGCQRVIYANMTGTGVSDFAVSWLHIQS 120
           VQLFSLIYDKLIWSSYSQRPNFYTSCITAFVQSGCQRVIYANMTGTGVSDFAVSWLHIQS
Sbjct: 61  VQLFSLIYDKLIWSSYSQRPNFYTSCITAFVQSGCQRVIYANMTGTGVSDFAVSWLHIQS 120

Query: 121 ST 123
           ST
Sbjct: 121 ST 122

[Close]
BLAST of Carg16862 vs. NCBI nr
Match: KAG6571489.1 (Histone H1.2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-04
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 1   MSDKLKPEFLHRNITFSMWPNPRM 25
           +SDKLKPEFLHRNITFSMWPNPRM
Sbjct: 267 LSDKLKPEFLHRNITFSMWPNPRM 290

The following BLAST results are available for this feature:
BLAST of Carg16862 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011252.11.6e-63100.00hypothetical protein SDJN02_26156, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6571489.12.9e-0495.83Histone H1.2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Carg16862 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16862 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16862 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16862-RACarg16862-RAmRNA