Carg16849 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16849
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSmall nuclear ribonucleoprotein Sm D1
LocationCarg_Chr19: 284368 .. 289177 (-)
RNA-Seq ExpressionCarg16849
SyntenyCarg16849
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTCCTCTCCCGCTTCGCTTGTTTGTCTGTGTTTGAAACCCTACATTCATTTCCCCTGCGATTATGAAGCTCGTTAGGTAATGCTCTTACGCTCTTCTCTTTTCTAATTTCGATCTCCCTCTTCTCGATCTACTCGCTGTTCTCTACCCAGAATGGCCGTTTTTATGTTTAGAAACTTGGATTTTGGTGAATGTACAGGTTTTTGATGAAGCTGAACAATGAGACAGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGTATCCTTCTCACTTTCACTCACAACCACGCACATTGATATTTTCTAAATCTTGTTAAACCCTAGATTTACCAGCTTTGTAGCAAAGCTTTTTTTTTAACTTCCAACTTCTGTTTTGTTTTCTTCTTTGAACTCCACTGTAGTGCAAGTTGTAGAATGTTTCAGTTGGAAGGGATAGTTGGAATATGGGTTCTACTGGCAATTTGGAGTGGTTTATGATTTATCTTGAACCTTCTTGTTCTTGATAATTTGGCTTACATAGATTTTTCTCTGCTACATTGCTGCTAGAAATTTAATTAATGTTTCGTTTAAAACTGTGTGTGGCTATTTTTCTTGCGATGGGTGAAGTACATTGCTACTATTAGTCACGCCAAGGTTCAGTCTGTCCGCCAGTGTACGATAATCGTTTTTTCTTGCTTATGTCTCACAACTATCTCCCAACATTTGTTCCTGCAATTGTGTAGTTGTGAAAGCTAACTCAAGAGTTCTGGCAAGCACGCGCTTGGAGAACCGCTATCCCACTCCCATTTTGAATCTTAAAAAATAGTACTAGCCCACTCCTAGCAGATATTGTCCTCTTTGAGTTTTCCCTTTCGAGCTTCCCCTCAAGGTTTTTAAAACGCGTTTGCTATGGAGAAGTTTCCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACCAATTTGGGATATCACAAAACACCCCCCTTTGGGACCCAGCGTCTTCGCTGGCACTCGTTCCCTTCTCCAACCAATGTGGGACCCTCAATCCACCCCCCTTTGGGGCTCAGCCTCCACGCTGGCACATCGTCCGATGTCTAGCTCTGATACCATTTGTAACAGTCTAAGCCCACCGCTAGCAGATATTGTTTTCTTTGGGCTTTCTCTTTCGGGCTTCCTCTCAAGGTTTTTAAAACGCGTCTTCTAGGGAGAGGGTTCCACACTCTTATAAATAATGCTTCGTTCTCCTCCTCAACCAACGTGGGATCTCACAATTATCATCATTAAAAAAAAAAAAGAAAAAAAAAAAGAAAACTAGTATTAAACTCATAGGTTGTTTACGGGCAATTAAATTCCTTGTCATCTGAGTGTTGGGAGGATGTGGTATTTTCTCTGTATAGTTTTTATTTTTATCATTCTTAACAAACAAATCAATTTGAACAATTGACTTCTGTCTACTGATGCTGAATGTCCATTCTATTTCATGGCATATCAGTAGATTTAAACAAATCTTTTGAATGTCCTCTCACATTTATATGGACTGATTCCTACTATTCCTTCTTTCCCCTTTGTTTTGTAGGGGTTGTTTCTTAAACCAAGTGAATATACTTCAACTTTTAACTTGAACTGTTTATCACATGCACTAGAATGGCATCAACTTAGTCTGATTAAACACTAACTTCTGCTGAACCCCAGTATTTTTGGATTGTGTTGCTCAAATGCCATTCTTCGGTGCATTATGATATATGCCATCCTTTCGTTTTGGGTTTTGTCTTCTTTATCGTTTGAAACGTAATAATAGTTACCATCCCTAAATGCAAAAACCCTTGCATTTAGGGTTTTTCTTCTTTATTAATTAATAAAAAAATTATATGTAGTGCACATTACAAAAGAAAGGCCTTGCTTTTTTATTTTTTTGCACCTTGCACGACATAAGGCTATTGTGCCTTGAGCTTTAGAAAACACTGATTACAATAGAATATGAATATCTTGTATTTGAATAACCATTGTAAAATGTTTGCGATACATTACAAATAGAATCTATAATAGATTATTTTTTCCTTAAGAAATTCATAGAAGCACAATTCCAAAAGATCTTAGCCTTAAATTTAAGCCATCAGGCCGTGAGGGCTTCCAAGAAAAATCGTCAACCAAGCTGGGTTGGCATAAACAGAAACCAGGCTCATTGAACATGAAAGACCACCTCCTATAGAAAAAGGTCAGTGGAGGTAATGGTAGTTTTGGGTTTCACCATAGGAATAGCAGAGGAACAAACCAGGGAAACAACCCAATTTTGAAACTTTTTTGGAGCCGCTTGGGGTGTTGAGGCTTCTTTAAGTAAGTGACCACACAATCATATTAACCTTTCTGGGGAAGTTAAACTTCCAAACTGATTTAACCAAAGGAGTTTTCAGCTTTAGCAAGGTCATAGAGAGTTTAATGAAGGTGATTTAGAGGAGAAGCAGTTGAATGAATCAATGTATTCTACCAGTCTTGGCCAGCTTCTAATTGAAACGTATCAATGTTTCCTATAAAGGCTATACAACTACCAATTTCTCTATGAAAAGAGCGAGCAAGCACCCCACAATTATCCCCCAATATTACCTATGGTTTTGGTTTAGGCTTCCTTGCCTATCTTTCTGGTTTGACCCCTTGTTGCCAACCATCACTCTTCTCCCTAAGCATTTAAGAATTAGAGCGTTATTTCCCTACTTCTGGAAAGAGCCAATGGAAGGGAAGTCCAACTCCCTTTTAATGGGTGCCTCAGGAGTTGGTGAATATTGATTAGATTGCATTAAGAAGTAGGATGTTATTTTCTCTACTTCCGGAAAGAGCCAATGGAAGGAAAGTCCAACTCCCTTTTATTGGGTGCTTCCATTTAACGTATCTCTCTATGCGGCTGCTACTGAAACTAGTTATTTTACTCACAGAGTCGTTTCTCACAAGATGCCTTTATGGGAGAATTGGGACTCAATTTCATAATTTTAGTTGGTTACCTCTTTTGTGGGAGGATTTCAACTGAGATTATAAACAATGTTTTAAAAAGCTAAAGGCAGCCTTGAGACTTTTCCTCCGGTGGAGGCGAGGTGAAAGCCTCAAGGTGGTATGAAGCATAAGACTAATTTAATTAAATTTTTTTTTACCAACAAACTTAGTAATCATAAAAAGTAAAAAAAAAAAAAAAAAAAGAAGCATGGACACATATGTCCGGACATGCTTTGGCCATGCTATACATGGCTAGACACACCTCTAGATAATATTTAACCCATAAAATAGGGGAAATTTTGAGATTTTCTTATAGATTGAATCTTTAAATATTGATCAATCCTAAAGTATTAGGATGACATGTTCATCCTCTTGCAGCTAACTAATCTTTTTATATGTTTTAAGGTTTCAAATATTGTTAGTTGACTTAACTATGGATGTTTTTAGTGAAGCATATTTTATTTTTATGTTTAATTCACATTTTATCTATTAAAAAAAAAAAATACTAATATACCTATATCGATACATATTTTATATAAAAAAACTTGTCCCGAAGGTGCTTGTGCTACTTTTTAAGAATTTGATGTGTCTCAGTGTTTATATCATTGTCTTGTATCTGTGCTTCTTAGATCATTCATGTCAATTGCACCTAAACATAAACTCTAAAGTGATATCTTTAACGTCACTACTATTATCATTAAGAGGAATCACTGTTTGGTTGATTTTGAGTGATTCTTTTGTGTTTCATAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACACCGAGGGTCAAGCCGAAGAAACCAACTGCAGGTACGTGTTGTCCTTGTATTCATGCCTATACTTATGGTCATTTCTGCGAATCAACTTGTGTATACCGAATCATATACTACCCATTATCAAATGTGTTGCTTAAGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGACGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGGTATAGCAATTCACTGCTCAATCTCATGTGTTTATTACAACGTTATCCAGTTGTTTTTCTATGATTGACGTAGCCTTACTATGTTTTTTTTTGATGCCTGGGGTCTGTTATTGATTTACACTCTAATAGCATCACAATGATCAAACTCTGGCATGTCTCTAGATTGGAATCTCGTCTCTTATCTTCAACTTTGATTGATGTAGTCATGCAGTACTTAAGTTGGTTACAATGAAAGACTATTGTGTCAAGTCATTTCTGTAAGACTTCTTTAGAGCTCTTCCTCCTCCATTTGCTTTACTCGTTCACTTTGCGGGTAATGCTAGAGGCCCTGAGGTCTGTATGCCCGCTTTGGACCTGTTCTTGAATTTCTCCAAGTTCATTGTTAGTAGATATTGTTCTCTTTCAACTTTCTTTTCTAGGTTTTTCCTCAAGGTTTTTAAAATGCGTTTGTTAAGCCCTGAAGTCTGTACAGTTGCTTCAGGTCCGCTGTTCTTAAACTTTCTCAAGTTCACCACTAGGATATATTGTTTGTTTTAGGCATTCTCTTTTGGGTTTTTCTTGAAGGTTTTTAAAACGTGTTGGTAGGGAAATTTTTTTATATTCTTGTAAAAA

mRNA sequence

AATTTCCTCTCCCGCTTCGCTTGTTTGTCTGTGTTTGAAACCCTACATTCATTTCCCCTGCGATTATGAAGCTCGTTAGGTTTTTGATGAAGCTGAACAATGAGACAGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACACCGAGGGTCAAGCCGAAGAAACCAACTGCAGGGAAGCCTATGGGACGTGGACGAGGACGTGGACGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGGTATAGCAATTCACTGCTCAATCTCATGTGTTTATTACAACGTTATCCAGTTGTTTTTCTATGATTGACGTAGCCTTACTATGTTTTTTTTTGATGCCTGGGGTCTGTTATTGATTTACACTCTAATAGCATCACAATGATCAAACTCTGGCATGTCTCTAGATTGGAATCTCGTCTCTTATCTTCAACTTTGATTGATGTAGTCATGCAGTACTTAAGTTGGTTACAATGAAAGACTATTGTGTCAAGTCATTTCTGTAAGACTTCTTTAGAGCTCTTCCTCCTCCATTTGCTTTACTCGTTCACTTTGCGGGTAATGCTAGAGGCCCTGAGGTCTGTATGCCCGCTTTGGACCTGTTCTTGAATTTCTCCAAGTTCATTGTTAGTAGATATTGTTCTCTTTCAACTTTCTTTTCTAGGTTTTTCCTCAAGGTTTTTAAAACGTGTTGGTAGGGAAATTTTTTTATATTCTTGTAAAAA

Coding sequence (CDS)

ATGAAGCTCGTTAGGTTTTTGATGAAGCTGAACAATGAGACAGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACACCGAGGGTCAAGCCGAAGAAACCAACTGCAGGGAAGCCTATGGGACGTGGACGAGGACGTGGACGTGGGCGCGGTCGTGGTCGTGGACGCTAG

Protein sequence

MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR
Homology
[Close]
BLAST of Carg16849 vs. NCBI nr
Match: XP_022963993.1 (small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] >XP_023553601.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita pepo subsp. pepo] >KAG7011241.1 Small nuclear ribonucleoprotein SmD1b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.0 bits (554), Expect = 4.2e-53
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Carg16849 vs. NCBI nr
Match: XP_022931093.1 (small nuclear ribonucleoprotein SmD1b [Cucurbita moschata] >XP_022995872.1 small nuclear ribonucleoprotein SmD1b [Cucurbita maxima] >XP_023533992.1 small nuclear ribonucleoprotein SmD1b [Cucurbita pepo subsp. pepo] >KAG7036369.1 Small nuclear ribonucleoprotein SmD1b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.9 bits (551), Expect = 9.3e-53
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKP+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Carg16849 vs. NCBI nr
Match: XP_004150106.1 (small nuclear ribonucleoprotein SmD1b [Cucumis sativus] >XP_008454659.1 PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis melo] >XP_022155676.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157762.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157763.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_038896755.1 small nuclear ribonucleoprotein SmD1b isoform X1 [Benincasa hispida] >XP_038897023.1 small nuclear ribonucleoprotein SmD1b isoform X1 [Benincasa hispida] >KGN59890.1 hypothetical protein Csa_002314 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 2.1e-52
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+P+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Carg16849 vs. NCBI nr
Match: XP_022967529.1 (small nuclear ribonucleoprotein SmD1a [Cucurbita maxima])

HSP 1 Score: 215.7 bits (548), Expect = 2.1e-52
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKP AGKPMGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAGKPMGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Carg16849 vs. NCBI nr
Match: XP_004242330.1 (small nuclear ribonucleoprotein SmD1b [Solanum lycopersicum] >XP_004247138.1 small nuclear ribonucleoprotein SmD1b [Solanum lycopersicum] >XP_006352764.1 PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Solanum tuberosum] >XP_015079618.1 small nuclear ribonucleoprotein SmD1b [Solanum pennellii] >XP_015086367.1 small nuclear ribonucleoprotein SmD1b [Solanum pennellii] >TMX04529.1 hypothetical protein EJD97_007857 [Solanum chilense] >QPG92975.1 SmD1a [Solanum lycopersicum] >QPG92976.1 SmD1b [Solanum lycopersicum])

HSP 1 Score: 215.7 bits (548), Expect = 2.1e-52
Identity = 111/114 (97.37%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLKAVK+TLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKAVKITLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Carg16849 vs. ExPASy Swiss-Prot
Match: Q9SY09 (Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-52
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGK-PMGRGRGRGRGRGRGRG 114
           RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAGK P GRGRGRGRGRGRGRG
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRG 114

[Close]
BLAST of Carg16849 vs. ExPASy Swiss-Prot
Match: Q9SSF1 (Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-51
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AGK +GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Carg16849 vs. ExPASy Swiss-Prot
Match: Q3ZC10 (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.0e-39
Identity = 86/114 (75.44%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 115
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Carg16849 vs. ExPASy Swiss-Prot
Match: P62314 (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.0e-39
Identity = 86/114 (75.44%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 115
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Carg16849 vs. ExPASy Swiss-Prot
Match: Q4R5F6 (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.0e-39
Identity = 86/114 (75.44%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 115
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Carg16849 vs. ExPASy TrEMBL
Match: A0A6J1HJI3 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111464127 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.0e-53
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Carg16849 vs. ExPASy TrEMBL
Match: A0A6J1K070 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC111491270 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.5e-53
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKP+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Carg16849 vs. ExPASy TrEMBL
Match: A0A6J1EXE6 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111437383 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.5e-53
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKP+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Carg16849 vs. ExPASy TrEMBL
Match: A0A7S9KJJ1 (SmD1a OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.0e-52
Identity = 111/114 (97.37%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLKAVK+TLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKAVKITLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Carg16849 vs. ExPASy TrEMBL
Match: A0A6J1DVC4 (Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC111024391 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.0e-52
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+P+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Carg16849 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 206.5 bits (524), Expect = 1.2e-53
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGK-PMGRGRGRGRGRGRGRG 114
           RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAGK P GRGRGRGRGRGRGRG
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRG 114

[Close]
BLAST of Carg16849 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 203.8 bits (517), Expect = 7.6e-53
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AGK +GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Carg16849 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 203.8 bits (517), Expect = 7.6e-53
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AGK +GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114

[Close]
BLAST of Carg16849 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 198.4 bits (503), Expect = 3.2e-51
Identity = 107/124 (86.29%), Postives = 112/124 (90.32%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGK 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTIT          GVD+SMNTHLKAVKLTLKGK
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGK 60

Query: 61  NPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGK-PMGRGRGRGRGRG 114
           NPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAGK P GRGRGRGRGRG
Sbjct: 61  NPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRG 120

[Close]
BLAST of Carg16849 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 50.8 bits (120), Expect = 8.2e-07
Identity = 33/113 (29.20%), Postives = 59/113 (52.21%), Query Frame = 0 

Query: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGN 63
           V+ L + +   V++ELK+G +  G++   + + N  L+ +  T K      ++H+ +RG+
Sbjct: 9   VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGS 68

Query: 64  NIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGR---GRGRGRG 114
            +R+ ++PD L    +      R+K K  + G   GRG  RG+   G GRG G
Sbjct: 69  KVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRGAMRGKPAAGPGRGTG 121

The following BLAST results are available for this feature:
BLAST of Carg16849 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022963993.14.2e-53100.00small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] >XP_023553601.1 ... [more]
XP_022931093.19.3e-5399.12small nuclear ribonucleoprotein SmD1b [Cucurbita moschata] >XP_022995872.1 small... [more]
XP_004150106.12.1e-5298.25small nuclear ribonucleoprotein SmD1b [Cucumis sativus] >XP_008454659.1 PREDICTE... [more]
XP_022967529.12.1e-5299.12small nuclear ribonucleoprotein SmD1a [Cucurbita maxima][more]
XP_004242330.12.1e-5297.37small nuclear ribonucleoprotein SmD1b [Solanum lycopersicum] >XP_004247138.1 sma... [more]
BLAST of Carg16849 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SY091.7e-5293.86Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B P... [more]
Q9SSF11.1e-5191.23Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A P... [more]
Q3ZC108.0e-3975.44Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1[more]
P623148.0e-3975.44Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=... [more]
Q4R5F68.0e-3975.44Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 P... [more]
BLAST of Carg16849 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HJI32.0e-53100.00Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111464... [more]
A0A6J1K0704.5e-5399.12Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC11149127... [more]
A0A6J1EXE64.5e-5399.12Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111437... [more]
A0A7S9KJJ11.0e-5297.37SmD1a OS=Solanum lycopersicum OX=4081 PE=2 SV=1[more]
A0A6J1DVC41.0e-5298.25Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC11102... [more]
BLAST of Carg16849 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G02840.11.2e-5393.86Small nuclear ribonucleoprotein family protein [more]
AT3G07590.17.6e-5391.23Small nuclear ribonucleoprotein family protein [more]
AT3G07590.27.6e-5391.23Small nuclear ribonucleoprotein family protein [more]
AT4G02840.23.2e-5186.29Small nuclear ribonucleoprotein family protein [more]
AT1G20580.18.2e-0729.20Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..70
e-value: 1.1E-16
score: 71.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 5..69
e-value: 4.0E-18
score: 64.9
NoneNo IPR availableGENE3D2.30.30.100coord: 1..49
e-value: 2.3E-19
score: 71.5
coord: 50..82
e-value: 1.9E-11
score: 46.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..114
NoneNo IPR availablePANTHERPTHR23338:SF50SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1coord: 1..110
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..110
IPR034102Small nuclear ribonucleoprotein D1CDDcd01724Sm_D1coord: 2..93
e-value: 1.08955E-57
score: 171.254
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16849-RACarg16849-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0006396 RNA processing
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0000243 commitment complex
cellular_component GO:0034715 pICln-Sm protein complex
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0034719 SMN-Sm protein complex
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0005682 U5 snRNP
molecular_function GO:0003723 RNA binding