Carg16848 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16848
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	outer envelope membrane protein 7-like
Location	Carg_Chr19: 283333 .. 283545 (-)
RNA-Seq Expression	Carg16848
Synteny	Carg16848

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGAAACCGTCTGGGTCCAAGCAAGCATTTTTCATCCTCGGAGCCTTGGCACTGGGTTGGCTAGCCATTGAGATGGCCTTCAAGCCCTTCCTCGATAAGGCCCGCTCCGCCATGGACAACTCTGATCCGACTCGGGATCCCGACGACCGTCTCGATAAACAATCTGATCACTTACAATCGGACGACGATCGAAGTACCACTGCTTGA

mRNA sequence

ATGGGAAAGAAACCGTCTGGGTCCAAGCAAGCATTTTTCATCCTCGGAGCCTTGGCACTGGGTTGGCTAGCCATTGAGATGGCCTTCAAGCCCTTCCTCGATAAGGCCCGCTCCGCCATGGACAACTCTGATCCGACTCGGGATCCCGACGACCGTCTCGATAAACAATCTGATCACTTACAATCGGACGACGATCGAAGTACCACTGCTTGA

Coding sequence (CDS)

ATGGGAAAGAAACCGTCTGGGTCCAAGCAAGCATTTTTCATCCTCGGAGCCTTGGCACTGGGTTGGCTAGCCATTGAGATGGCCTTCAAGCCCTTCCTCGATAAGGCCCGCTCCGCCATGGACAACTCTGATCCGACTCGGGATCCCGACGACCGTCTCGATAAACAATCTGATCACTTACAATCGGACGACGATCGAAGTACCACTGCTTGA

Protein sequence

MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHLQSDDDRSTTA

Homology

[Close]

BLAST of Carg16848 vs. NCBI nr
Match: XP_022963695.1 (outer envelope membrane protein 7-like [Cucurbita moschata] >XP_022963696.1 outer envelope membrane protein 7-like [Cucurbita moschata] >XP_022963697.1 outer envelope membrane protein 7-like [Cucurbita moschata] >KAG7011240.1 Outer envelope membrane protein 7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.5 bits (345), Expect = 4.4e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL 60
          MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL
Sbjct: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL 60

Query: 61 QSDDDRSTTA 71
          QSDDDRSTTA
Sbjct: 61 QSDDDRSTTA 70

[Close]

BLAST of Carg16848 vs. NCBI nr
Match: XP_023553591.1 (outer envelope membrane protein 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.8 bits (338), Expect = 2.9e-28
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL 60
          MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDD LDKQSDHL
Sbjct: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDLLDKQSDHL 60

Query: 61 QSDDDRSTTA 71
          QSDDDRSTTA
Sbjct: 61 QSDDDRSTTA 70

[Close]

BLAST of Carg16848 vs. NCBI nr
Match: XP_022967520.1 (outer envelope membrane protein 7-like [Cucurbita maxima] >XP_022967521.1 outer envelope membrane protein 7-like [Cucurbita maxima])

HSP 1 Score: 131.3 bits (329), Expect = 3.2e-27
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL 60
          MGKKPSGSKQAFFILGALALGWLAIE+AFKPFLDKARSAMDNSDPTRDPDD LDKQSDHL
Sbjct: 1  MGKKPSGSKQAFFILGALALGWLAIEIAFKPFLDKARSAMDNSDPTRDPDDLLDKQSDHL 60

Query: 61 QSDDDRSTTA 71
          QSDDDRST A
Sbjct: 61 QSDDDRSTNA 70

[Close]

BLAST of Carg16848 vs. NCBI nr
Match: XP_038888886.1 (outer envelope membrane protein 7-like [Benincasa hispida] >XP_038888887.1 outer envelope membrane protein 7-like [Benincasa hispida] >XP_038888888.1 outer envelope membrane protein 7-like [Benincasa hispida] >XP_038888889.1 outer envelope membrane protein 7-like [Benincasa hispida])

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL 60
          MGKKPSG+KQAFF+ GALALGWLAIEMAFKPFLDKARSAMDNSDP +DPDD +D QSD  
Sbjct: 1  MGKKPSGTKQAFFVFGALALGWLAIEMAFKPFLDKARSAMDNSDPAQDPDDLVDNQSDQS 60

Query: 61 QSDDDRSTTA 71
           SDDD+STTA
Sbjct: 61 PSDDDQSTTA 70

[Close]

BLAST of Carg16848 vs. NCBI nr
Match: XP_022155586.1 (outer envelope membrane protein 7-like [Momordica charantia])

HSP 1 Score: 114.0 bits (284), Expect = 5.2e-22
Identity = 58/70 (82.86%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL 60
          MGKKPSG+KQAF + GALALGWLAIEMAFKPFLDKARSAMD SDPTRDPDD +D  SDH 
Sbjct: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60

Query: 61 QSDDDRSTTA 71
           SDDD STTA
Sbjct: 61 PSDDDESTTA 70

[Close]

BLAST of Carg16848 vs. ExPASy Swiss-Prot
Match: Q9SVC4 (Outer envelope membrane protein 7 OS=Arabidopsis thaliana OX=3702 GN=OEP7 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-12
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 4  KPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDD 52
          K SG+KQA  ++ A+ALGWLAIE+AFKPFLDK RS++D SDPT+DPDD
Sbjct: 3  KTSGAKQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKSDPTKDPDD 50

[Close]

BLAST of Carg16848 vs. ExPASy TrEMBL
Match: A0A6J1HGS4 (outer envelope membrane protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111463949 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.1e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL 60
          MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL
Sbjct: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL 60

Query: 61 QSDDDRSTTA 71
          QSDDDRSTTA
Sbjct: 61 QSDDDRSTTA 70

[Close]

BLAST of Carg16848 vs. ExPASy TrEMBL
Match: A0A6J1HUQ5 (outer envelope membrane protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111467002 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-27
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL 60
          MGKKPSGSKQAFFILGALALGWLAIE+AFKPFLDKARSAMDNSDPTRDPDD LDKQSDHL
Sbjct: 1  MGKKPSGSKQAFFILGALALGWLAIEIAFKPFLDKARSAMDNSDPTRDPDDLLDKQSDHL 60

Query: 61 QSDDDRSTTA 71
          QSDDDRST A
Sbjct: 61 QSDDDRSTNA 70

[Close]

BLAST of Carg16848 vs. ExPASy TrEMBL
Match: A0A6J1DS29 (outer envelope membrane protein 7-like OS=Momordica charantia OX=3673 GN=LOC111022685 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.5e-22
Identity = 58/70 (82.86%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL 60
          MGKKPSG+KQAF + GALALGWLAIEMAFKPFLDKARSAMD SDPTRDPDD +D  SDH 
Sbjct: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60

Query: 61 QSDDDRSTTA 71
           SDDD STTA
Sbjct: 61 PSDDDESTTA 70

[Close]

BLAST of Carg16848 vs. ExPASy TrEMBL
Match: A0A5A7URM9 (6.7 kDa chloroplast outer envelope membrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00570 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL 60
          M K+PSG+ QAFF+  ALA+GWLAIEMAFKPFLDKARSAMD SDP RDPD+ +D QSDH 
Sbjct: 1  MSKRPSGTTQAFFVFSALAMGWLAIEMAFKPFLDKARSAMDKSDPARDPDELVDNQSDHT 60

Query: 61 QSDDDRST 69
           SDDD+ST
Sbjct: 61 SSDDDQST 68

[Close]

BLAST of Carg16848 vs. ExPASy TrEMBL
Match: A0A0A0KJE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409970 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-14
Identity = 47/69 (68.12%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL 60
          M  K S +KQAFF+ GALA+GWLAIEMAFKP L KARSAMD SDP RDPD+ L    DH 
Sbjct: 1  MTNKSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDELL----DHT 60

Query: 61 QSDDDRSTT 70
           SDDDR+ T
Sbjct: 61 SSDDDRNAT 65

[Close]

BLAST of Carg16848 vs. TAIR 10
Match: AT3G52420.1 (outer envelope membrane protein 7 )

HSP 1 Score: 73.6 bits (179), Expect = 7.3e-14
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 4  KPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDD 52
          K SG+KQA  ++ A+ALGWLAIE+AFKPFLDK RS++D SDPT+DPDD
Sbjct: 3  KTSGAKQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKSDPTKDPDD 50

[Close]

BLAST of Carg16848 vs. TAIR 10
Match: AT3G63160.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: outer envelope membrane protein 7 (TAIR:AT3G52420.1); Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 3.3e-06
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 3  KKPSGSKQ-AFFILGALALGWLAIEMAFKPFLDKARSAMDNSD 45
          +KP+G KQ A  ++G LA+GWLAIE+ FKP   K  S+ D SD
Sbjct: 15 EKPTGKKQTATVVVGVLAVGWLAIELVFKPLFKKLSSSKDKSD 57

The following BLAST results are available for this feature:

BLAST of Carg16848 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963695.1	4.4e-29	100.00	outer envelope membrane protein 7-like [Cucurbita moschata] >XP_022963696.1 oute...	[more]
XP_023553591.1	2.9e-28	98.57	outer envelope membrane protein 7-like [Cucurbita pepo subsp. pepo]	[more]
XP_022967520.1	3.2e-27	95.71	outer envelope membrane protein 7-like [Cucurbita maxima] >XP_022967521.1 outer ...	[more]
XP_038888886.1	1.4e-22	82.86	outer envelope membrane protein 7-like [Benincasa hispida] >XP_038888887.1 outer...	[more]
XP_022155586.1	5.2e-22	82.86	outer envelope membrane protein 7-like [Momordica charantia]	[more]

BLAST of Carg16848 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVC4	1.0e-12	70.83	Outer envelope membrane protein 7 OS=Arabidopsis thaliana OX=3702 GN=OEP7 PE=1 S...	[more]

BLAST of Carg16848 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HGS4	2.1e-29	100.00	outer envelope membrane protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1HUQ5	1.5e-27	95.71	outer envelope membrane protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC1114670...	[more]
A0A6J1DS29	2.5e-22	82.86	outer envelope membrane protein 7-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A5A7URM9	1.5e-19	75.00	6.7 kDa chloroplast outer envelope membrane protein OS=Cucumis melo var. makuwa ...	[more]
A0A0A0KJE9	1.5e-14	68.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409970 PE=4 SV=1	[more]

BLAST of Carg16848 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52420.1	7.3e-14	70.83	outer envelope membrane protein 7	[more]
AT3G63160.1	3.3e-06	53.49	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..70
None	No IPR available	PANTHER	PTHR33982:SF5	OUTER ENVELOPE MEMBRANE PROTEIN 7	coord: 5..61
IPR038944	Outer envelope membrane protein 7-like	PANTHER	PTHR33982	OUTER ENVELOPE MEMBRANE PROTEIN 7-RELATED	coord: 5..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16848-RA	Carg16848-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031359	integral component of chloroplast outer membrane