Carg16825 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16825
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr19: 124498 .. 124944 (+)
RNA-Seq Expression	Carg16825
Synteny	Carg16825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCCTCACAACCTCAGAATCCCGACGAGTACTCTGTCTCTTCGACAGTTATCACCTTCGGACGCCCAATTCCTCTTCTTCGTGGGCCAATTCGAGCCGGTCAATCCGAAAATCCCTCGGCAGGTCCGTACATGCTTGGATTTAGGGATCCCCAAGCGTGGGAATCTGCATACAAAATATGCGAGTTGAACATTATTGAACAGTGCGAGGCCGGCGCGAGGATTGGCTGTTCAATAATTGCTTCCGACAAATGCAAGCCGCGGTGGTGGGGATTTTTGATGCAATCGAAGAAGGGGTTGGATTTGAAGGCGAGGGAGATGTGCGAAGAGCGAGAAATGGAGGCTTGCTTGGCTGCTGCAAAGGAGAAGTATGTTGGTTTCGCGAAGGAGAAGTGTTCTAAGCCGTTCATGGATGCTAGAATTGGAATTTTTCAAAAGGTCTGA

mRNA sequence

ATGGAGTCCTCACAACCTCAGAATCCCGACGAGTACTCTGTCTCTTCGACAGTTATCACCTTCGGACGCCCAATTCCTCTTCTTCGTGGGCCAATTCGAGCCGGTCAATCCGAAAATCCCTCGGCAGGTCCGTACATGCTTGGATTTAGGGATCCCCAAGCGTGGGAATCTGCATACAAAATATGCGAGTTGAACATTATTGAACAGTGCGAGGCCGGCGCGAGGATTGGCTGTTCAATAATTGCTTCCGACAAATGCAAGCCGCGGTGGTGGGGATTTTTGATGCAATCGAAGAAGGGGTTGGATTTGAAGGCGAGGGAGATGTGCGAAGAGCGAGAAATGGAGGCTTGCTTGGCTGCTGCAAAGGAGAAGTATGTTGGTTTCGCGAAGGAGAAGTGTTCTAAGCCGTTCATGGATGCTAGAATTGGAATTTTTCAAAAGGTCTGA

Coding sequence (CDS)

ATGGAGTCCTCACAACCTCAGAATCCCGACGAGTACTCTGTCTCTTCGACAGTTATCACCTTCGGACGCCCAATTCCTCTTCTTCGTGGGCCAATTCGAGCCGGTCAATCCGAAAATCCCTCGGCAGGTCCGTACATGCTTGGATTTAGGGATCCCCAAGCGTGGGAATCTGCATACAAAATATGCGAGTTGAACATTATTGAACAGTGCGAGGCCGGCGCGAGGATTGGCTGTTCAATAATTGCTTCCGACAAATGCAAGCCGCGGTGGTGGGGATTTTTGATGCAATCGAAGAAGGGGTTGGATTTGAAGGCGAGGGAGATGTGCGAAGAGCGAGAAATGGAGGCTTGCTTGGCTGCTGCAAAGGAGAAGTATGTTGGTTTCGCGAAGGAGAAGTGTTCTAAGCCGTTCATGGATGCTAGAATTGGAATTTTTCAAAAGGTCTGA

Protein sequence

MESSQPQNPDEYSVSSTVITFGRPIPLLRGPIRAGQSENPSAGPYMLGFRDPQAWESAYKICELNIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAAAKEKYVGFAKEKCSKPFMDARIGIFQKV

Homology

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BLAST of Carg16825 vs. NCBI nr
Match: KAG7011217.1 (hypothetical protein SDJN02_26120, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308.9 bits (790), Expect = 2.3e-80
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MESSQPQNPDEYSVSSTVITFGRPIPLLRGPIRAGQSENPSAGPYMLGFRDPQAWESAYK 60
           MESSQPQNPDEYSVSSTVITFGRPIPLLRGPIRAGQSENPSAGPYMLGFRDPQAWESAYK
Sbjct: 1   MESSQPQNPDEYSVSSTVITFGRPIPLLRGPIRAGQSENPSAGPYMLGFRDPQAWESAYK 60

Query: 61  ICELNIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120
           ICELNIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA
Sbjct: 61  ICELNIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120

Query: 121 AKEKYVGFAKEKCSKPFMDARIGIFQKV 149
           AKEKYVGFAKEKCSKPFMDARIGIFQKV
Sbjct: 121 AKEKYVGFAKEKCSKPFMDARIGIFQKV 148

[Close]

BLAST of Carg16825 vs. NCBI nr
Match: XP_022963883.1 (uncharacterized protein LOC111464060 [Cucurbita moschata])

HSP 1 Score: 295.8 bits (756), Expect = 2.0e-76
Identity = 143/148 (96.62%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MESSQPQNPDEYSVSSTVITFGRPIPLLRGPIRAGQSENPSAGPYMLGFRDPQAWESAYK 60
           MESSQPQNPDEYS SSTVITFGRPIPLLRGPIRAGQSENPSAGP ML FRDPQAWESAYK
Sbjct: 8   MESSQPQNPDEYSASSTVITFGRPIPLLRGPIRAGQSENPSAGPSMLAFRDPQAWESAYK 67

Query: 61  ICELNIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120
           ICEL IIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA
Sbjct: 68  ICELKIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 127

Query: 121 AKEKYVGFAKEKCSKPFMDARIGIFQKV 149
           AKEK VGFAKEKCSKPFMDARIGIFQKV
Sbjct: 128 AKEKCVGFAKEKCSKPFMDARIGIFQKV 155

[Close]

BLAST of Carg16825 vs. NCBI nr
Match: KAG6571451.1 (hypothetical protein SDJN03_28179, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.1 bits (658), Expect = 4.7e-65
Identity = 123/126 (97.62%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MESSQPQNPDEYSVSSTVITFGRPIPLLRGPIRAGQSENPSAGPYMLGFRDPQAWESAYK 60
           MESSQPQNPDEYS SSTVITFGRPIPLLRGPIRAGQSENPSAGPYML FRDPQAWESAYK
Sbjct: 1   MESSQPQNPDEYSASSTVITFGRPIPLLRGPIRAGQSENPSAGPYMLAFRDPQAWESAYK 60

Query: 61  ICELNIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120
           ICEL IIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA
Sbjct: 61  ICELKIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120

Query: 121 AKEKYV 127
           AKEKYV
Sbjct: 121 AKEKYV 126

[Close]

BLAST of Carg16825 vs. NCBI nr
Match: XP_022145972.1 (uncharacterized protein LOC111015296 [Momordica charantia] >XP_022145973.1 uncharacterized protein LOC111015296 [Momordica charantia] >XP_022145974.1 uncharacterized protein LOC111015296 [Momordica charantia] >XP_022145975.1 uncharacterized protein LOC111015296 [Momordica charantia] >XP_022145976.1 uncharacterized protein LOC111015296 [Momordica charantia])

HSP 1 Score: 256.5 bits (654), Expect = 1.4e-64
Identity = 121/142 (85.21%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MESSQPQNPDEYSVSSTVITFGRPIPLLRGPIRAGQSENPSAGPYMLGFRDPQAWESAYK 60
           ME SQPQNPD+YS SST+ITF RPIPL+RGPIRAG SENPSAGPY+L FRDPQAWESAYK
Sbjct: 9   MEPSQPQNPDDYSASSTIITFQRPIPLIRGPIRAGPSENPSAGPYLLAFRDPQAWESAYK 68

Query: 61  ICELNIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120
           ICE  IIEQCEAGARIGCSI AS+KCKP WWGFL+ S KGLDLK RE CEEREMEACLAA
Sbjct: 69  ICESKIIEQCEAGARIGCSITASNKCKPPWWGFLIHSSKGLDLKEREHCEEREMEACLAA 128

Query: 121 AKEKYVGFAKEKCSKPFMDARI 143
           AKEK VGFAKEKCSKPFM+ARI
Sbjct: 129 AKEKCVGFAKEKCSKPFMEARI 150

[Close]

BLAST of Carg16825 vs. NCBI nr
Match: XP_022995502.1 (uncharacterized protein LOC111491021 [Cucurbita maxima] >XP_022995503.1 uncharacterized protein LOC111491021 [Cucurbita maxima] >XP_022995504.1 uncharacterized protein LOC111491021 [Cucurbita maxima] >XP_022995505.1 uncharacterized protein LOC111491021 [Cucurbita maxima] >XP_022995506.1 uncharacterized protein LOC111491021 [Cucurbita maxima])

HSP 1 Score: 250.4 bits (638), Expect = 9.9e-63
Identity = 118/142 (83.10%), Postives = 127/142 (89.44%), Query Frame = 0


Query: 1   MESSQPQNPDEYSVSSTVITFGRPIPLLRGPIRAGQSENPSAGPYMLGFRDPQAWESAYK 60
           ME SQPQNPD+YS ++T+ITF RPIPLLRGPIRAG+SENPSAGPY+L FRDPQAWESAYK
Sbjct: 9   MEPSQPQNPDDYSAATTIITFQRPIPLLRGPIRAGRSENPSAGPYLLAFRDPQAWESAYK 68

Query: 61  ICELNIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120
           ICE  IIEQCEAGARIGCSI A +KCK  WW FL+QSKKGLDLK RE CEEREMEACLA 
Sbjct: 69  ICESKIIEQCEAGARIGCSITAINKCKRPWWSFLIQSKKGLDLKDREQCEEREMEACLAG 128

Query: 121 AKEKYVGFAKEKCSKPFMDARI 143
           AKEK VGFAKEKCSKPFM+ARI
Sbjct: 129 AKEKCVGFAKEKCSKPFMEARI 150

[Close]

BLAST of Carg16825 vs. ExPASy TrEMBL
Match: A0A6J1HJ78 (uncharacterized protein LOC111464060 OS=Cucurbita moschata OX=3662 GN=LOC111464060 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 9.9e-77
Identity = 143/148 (96.62%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MESSQPQNPDEYSVSSTVITFGRPIPLLRGPIRAGQSENPSAGPYMLGFRDPQAWESAYK 60
           MESSQPQNPDEYS SSTVITFGRPIPLLRGPIRAGQSENPSAGP ML FRDPQAWESAYK
Sbjct: 8   MESSQPQNPDEYSASSTVITFGRPIPLLRGPIRAGQSENPSAGPSMLAFRDPQAWESAYK 67

Query: 61  ICELNIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120
           ICEL IIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA
Sbjct: 68  ICELKIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 127

Query: 121 AKEKYVGFAKEKCSKPFMDARIGIFQKV 149
           AKEK VGFAKEKCSKPFMDARIGIFQKV
Sbjct: 128 AKEKCVGFAKEKCSKPFMDARIGIFQKV 155

[Close]

BLAST of Carg16825 vs. ExPASy TrEMBL
Match: A0A6J1CY74 (uncharacterized protein LOC111015296 OS=Momordica charantia OX=3673 GN=LOC111015296 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.7e-65
Identity = 121/142 (85.21%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MESSQPQNPDEYSVSSTVITFGRPIPLLRGPIRAGQSENPSAGPYMLGFRDPQAWESAYK 60
           ME SQPQNPD+YS SST+ITF RPIPL+RGPIRAG SENPSAGPY+L FRDPQAWESAYK
Sbjct: 9   MEPSQPQNPDDYSASSTIITFQRPIPLIRGPIRAGPSENPSAGPYLLAFRDPQAWESAYK 68

Query: 61  ICELNIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120
           ICE  IIEQCEAGARIGCSI AS+KCKP WWGFL+ S KGLDLK RE CEEREMEACLAA
Sbjct: 69  ICESKIIEQCEAGARIGCSITASNKCKPPWWGFLIHSSKGLDLKEREHCEEREMEACLAA 128

Query: 121 AKEKYVGFAKEKCSKPFMDARI 143
           AKEK VGFAKEKCSKPFM+ARI
Sbjct: 129 AKEKCVGFAKEKCSKPFMEARI 150

[Close]

BLAST of Carg16825 vs. ExPASy TrEMBL
Match: A0A6J1JZ34 (uncharacterized protein LOC111491021 OS=Cucurbita maxima OX=3661 GN=LOC111491021 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.8e-63
Identity = 118/142 (83.10%), Postives = 127/142 (89.44%), Query Frame = 0


Query: 1   MESSQPQNPDEYSVSSTVITFGRPIPLLRGPIRAGQSENPSAGPYMLGFRDPQAWESAYK 60
           ME SQPQNPD+YS ++T+ITF RPIPLLRGPIRAG+SENPSAGPY+L FRDPQAWESAYK
Sbjct: 9   MEPSQPQNPDDYSAATTIITFQRPIPLLRGPIRAGRSENPSAGPYLLAFRDPQAWESAYK 68

Query: 61  ICELNIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120
           ICE  IIEQCEAGARIGCSI A +KCK  WW FL+QSKKGLDLK RE CEEREMEACLA 
Sbjct: 69  ICESKIIEQCEAGARIGCSITAINKCKRPWWSFLIQSKKGLDLKDREQCEEREMEACLAG 128

Query: 121 AKEKYVGFAKEKCSKPFMDARI 143
           AKEK VGFAKEKCSKPFM+ARI
Sbjct: 129 AKEKCVGFAKEKCSKPFMEARI 150

[Close]

BLAST of Carg16825 vs. ExPASy TrEMBL
Match: A0A6J1ES78 (uncharacterized protein LOC111437258 OS=Cucurbita moschata OX=3662 GN=LOC111437258 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.8e-62
Identity = 116/142 (81.69%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MESSQPQNPDEYSVSSTVITFGRPIPLLRGPIRAGQSENPSAGPYMLGFRDPQAWESAYK 60
           ME SQPQNPD+YS ++T+ITF RPIPLLRGPIR+G+SENPSAGPY+L FRDPQAW+SAYK
Sbjct: 9   MEPSQPQNPDDYSAATTIITFQRPIPLLRGPIRSGRSENPSAGPYLLAFRDPQAWKSAYK 68

Query: 61  ICELNIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120
           ICE  IIEQCEAGARIGCSI A +KCK  WW FL+QSKKGLDLK RE+CEEREMEACLA 
Sbjct: 69  ICESKIIEQCEAGARIGCSITAINKCKRPWWSFLIQSKKGLDLKDRELCEEREMEACLAG 128

Query: 121 AKEKYVGFAKEKCSKPFMDARI 143
           AKEK VGFAKEKCSKPFM+ARI
Sbjct: 129 AKEKCVGFAKEKCSKPFMEARI 150

[Close]

BLAST of Carg16825 vs. ExPASy TrEMBL
Match: A0A5A7UV37 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G002790 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 7.6e-61
Identity = 115/142 (80.99%), Postives = 123/142 (86.62%), Query Frame = 0


Query: 1   MESSQPQNPDEYSVSSTVITFGRPIPLLRGPIRAGQSENPSAGPYMLGFRDPQAWESAYK 60
           ME SQP NP EYS SST+ITF RPIPLLRGP+RA QSENPSAGPY+L F+D QAWESA+K
Sbjct: 9   MEPSQPHNPHEYSASSTIITFQRPIPLLRGPVRASQSENPSAGPYLLAFKDRQAWESAFK 68

Query: 61  ICELNIIEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAA 120
            CE  IIEQCEAGARIGCSI AS+KCKP WWGFL +SKKGLDLK RE CEE EMEACLAA
Sbjct: 69  ACESKIIEQCEAGARIGCSITASNKCKPPWWGFLFRSKKGLDLKEREQCEELEMEACLAA 128

Query: 121 AKEKYVGFAKEKCSKPFMDARI 143
           AKEK VGFAKEKC KPFM+ARI
Sbjct: 129 AKEKCVGFAKEKCYKPFMEARI 150

[Close]

BLAST of Carg16825 vs. TAIR 10
Match: AT3G63390.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-34
Identity = 68/136 (50.00%), Postives = 90/136 (66.18%), Query Frame = 0


Query: 7   QNPDEYSVSSTVITFGRPIPLLRGPIRAGQSENPSAGPYMLGFRDPQAWESAYKICELNI 66
           ++ D++S ++T + F RPIPLLRGP+       PS G Y+L FR   +W +A+K CE  I
Sbjct: 3   EDDDDFSAAATTVVFDRPIPLLRGPV-------PSGGSYVLAFRSLDSWSAAFKRCETLI 62

Query: 67  IEQCEAGARIGCSIIASDKCKPRWWGFLMQSKKGLDLKAREMCEEREMEACLAAAKEKYV 126
            +QCE GA+IGC++ AS+ CKP WW        G D++ RE CEERE E C+AAAK K  
Sbjct: 63  KDQCEEGAKIGCAVSASNNCKPPWW-----RGSGGDMREREKCEEREFEGCVAAAKGKCA 122

Query: 127 GFAKEKCSKPFMDARI 143
            FAK+KCS  F+DARI
Sbjct: 123 AFAKDKCSGAFLDARI 126

The following BLAST results are available for this feature:

BLAST of Carg16825 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011217.1	2.3e-80	100.00	hypothetical protein SDJN02_26120, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022963883.1	2.0e-76	96.62	uncharacterized protein LOC111464060 [Cucurbita moschata]	[more]
KAG6571451.1	4.7e-65	97.62	hypothetical protein SDJN03_28179, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022145972.1	1.4e-64	85.21	uncharacterized protein LOC111015296 [Momordica charantia] >XP_022145973.1 uncha...	[more]
XP_022995502.1	9.9e-63	83.10	uncharacterized protein LOC111491021 [Cucurbita maxima] >XP_022995503.1 uncharac...	[more]

BLAST of Carg16825 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg16825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJ78	9.9e-77	96.62	uncharacterized protein LOC111464060 OS=Cucurbita moschata OX=3662 GN=LOC1114640...	[more]
A0A6J1CY74	6.7e-65	85.21	uncharacterized protein LOC111015296 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1JZ34	4.8e-63	83.10	uncharacterized protein LOC111491021 OS=Cucurbita maxima OX=3661 GN=LOC111491021...	[more]
A0A6J1ES78	1.8e-62	81.69	uncharacterized protein LOC111437258 OS=Cucurbita moschata OX=3662 GN=LOC1114372...	[more]
A0A5A7UV37	7.6e-61	80.99	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Carg16825 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63390.1	1.6e-34	50.00	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36773	EXPRESSED PROTEIN	coord: 3..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16825-RA	Carg16825-RA	mRNA