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Carg16806 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTAGAGAAGAAAAACGGTGTACGGACTATACTTGAGCTTCAGATCAATGTATCCAAAAGCAAGGAGTATGCATGCGTCTTTCAATGAGAACATTGAAAAAACCTAATTCAGCTCTATGTAAGATAGCCCAAGTACGAAAACGGTGCACAGACCGTACTCGAGCTTTGGATCAATATCCCCAGAAGCCAGGAGTACATTTGCGTCTTTCAACGAGAACACTTAAAAAAACCTAATTCAAATCCACGTAAGATAGCCAAAGTACGAAAACGGCGCATGGACCATACTCAAGCTTCGAATCAATGTCCTCAGAAGCAAAGTGTACGCTCATGTCTTTCAACGAGAATACTGAAAAAACATAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGCACACGGATTGTACTCGAGCTTCAAATCAATATTCACAAAAGCAAGGAGTACGCTTGCGTCTTTCAACGAGAACACTAAAAAAACCTAATTCAACTCTATGTAAGATAAACAAAGTACGAAAATGGCACAGGGACTGTACTCAAGCTTCAGATCAATATCCCAAGAAGCAAGGAGTATGCGCCCGTCCTTCAACGAGAACACGAAAAAATCTGATTCAACTCAACGTAAGATAGCCAAAGTACGAAAACGGCGCACGAACTGTACTAGAGCTTCAGATCAATATCTCCAGAAGCAAGAAGTATGCCCGCGTCTTTCAACGAGAACACCGAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGTGCACGGACCGTACTCGAGCTTTGGATCAATGTCCCCTGAAGCAAAGAGTACGCTTGCGTCTTTCAACGAGAAAATCAAAAAAATCTAATTCAGCTATACTTAAGATAGCCAAAGTACGAAAACAGCGCACAGACCGTACTTGAGCTTCAGATCAATATCCCCAGAAGCAAGGAGTACGCCCACGTCTTTCAACGAGAACACCGAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGCACACGGACCGTACTCGAGCTTCAGATCAATGTCCCTTGAAGCAAGGAGTACGCCCGCGTCTTTCAACAAGAATATCGAAAAAACCTAATTAAGCTCTACTTAAGATAGCCAAAGTACGAAAACGGCGCACGAAATCGTACTTGAGCTTCAGATCAATATCCCTAGAAGCAAGGAGTACGCTCGTGTCTTTCAATGAGAATACTGAAAAAAAACCTAATTTAGCTCTACGTAAGATAGACAAAGTACAAAAATGGCGCACGGACTGTACTCGAGCTTTGGATCAATATCCTCATAAGCATGGAGTACACTCGCGTCTTTCAATGAGAACACTGAAAAAACCTAATTCAACTCTATGTAAGATAGACAAAGTACGTAAATGGCGCACGGACTGTACTCGAGCTTCGGATCAATATCCCTAG ATGGTAGAGAAGAAAAACGGTGTACGGACTATACTTGAGCTTCAGATCAATGTATCCAAAAGCAAGGAGTATGCATGCCCCAAGTACGAAAACGGTGCACAGACCGTACTCGAGCTTTGGATCAATATCCCCAGAAGCCAGGAGTACATTTGCGTCTTTCAACGAGAACACTTAAAAAAACCTAATTCAAATCCACGTAAGATAGCCAAAGTACGAAAACGGCGCATGGACCATACTCAAGCTTCGAATCAATGTCCTCAGAAGCAAAGTGTACGCTCATGTCTTTCAACGAGAATACTGAAAAAACATAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGCACACGGATTGTACTCGAGCTTCAAATCAATATTCACAAAAGCAAGGAGTACGCTTGCGTCTTTCAACGAGAACACTAAAAAAACCTAATTCAACTCTATGTAAGATAAACAAAGTACGAAAATGGCACAGGGACTGTACTCAAGCTTCAGATCAATATCCCAAGAAGCAAGGAGTATGCGCCCGTCCTTCAACGAGAACACGAAAAAATCTGATTCAACTCAACCCAAAGTACGAAAACGGCGCACGAACTGTACTAGAGCTTCAGATCAATATCTCCAGAAGCAAGAAGTATGCCCGCGTCTTTCAACGAGAACACCGAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGTGCACGGACCGTACTCGAGCTTTGGATCAATGTCCCCTGAAGCAAAGATACGAAAACAGCGCACAGACCGTACTTGAGCTTCAGATCAATATCCCCAGAAGCAAGGAGTACGCCCACGTCTTTCAACGAGAACACCGAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGCACACGGACCGTACTCGAGCTTCAGATCAATGTCCCTTGAAGCAAGGAATAGCCAAAGTACGAAAACGGCGCACGAAATCGTACTTGAGCTTCAGATCAATATCCCTAGAAGCAAGGAGTACGCTCGTGTCTTTCAATGAGAATACTGAAAAAAAACCTAATTTAGCTCTACGTAAGATAGACAAAGTACAAAAATGGCGCACGGACTGTACTCGAGCTTTGGATCAATATCCTCATAAGCATGGAGTACACTCGCGTCTTTCAATGAGAACACTGAAAAAACCTAATTCAACTCTATGTAAGATAGACAAAGTACGTAAATGGCGCACGGACTGTACTCGAGCTTCGGATCAATATCCCTAG ATGGTAGAGAAGAAAAACGGTGTACGGACTATACTTGAGCTTCAGATCAATGTATCCAAAAGCAAGGAGTATGCATGCCCCAAGTACGAAAACGGTGCACAGACCGTACTCGAGCTTTGGATCAATATCCCCAGAAGCCAGGAGTACATTTGCGTCTTTCAACGAGAACACTTAAAAAAACCTAATTCAAATCCACGTAAGATAGCCAAAGTACGAAAACGGCGCATGGACCATACTCAAGCTTCGAATCAATGTCCTCAGAAGCAAAGTGTACGCTCATGTCTTTCAACGAGAATACTGAAAAAACATAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGCACACGGATTGTACTCGAGCTTCAAATCAATATTCACAAAAGCAAGGAGTACGCTTGCGTCTTTCAACGAGAACACTAAAAAAACCTAATTCAACTCTATGTAAGATAAACAAAGTACGAAAATGGCACAGGGACTGTACTCAAGCTTCAGATCAATATCCCAAGAAGCAAGGAGTATGCGCCCGTCCTTCAACGAGAACACGAAAAAATCTGATTCAACTCAACCCAAAGTACGAAAACGGCGCACGAACTGTACTAGAGCTTCAGATCAATATCTCCAGAAGCAAGAAGTATGCCCGCGTCTTTCAACGAGAACACCGAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGTGCACGGACCGTACTCGAGCTTTGGATCAATGTCCCCTGAAGCAAAGATACGAAAACAGCGCACAGACCGTACTTGAGCTTCAGATCAATATCCCCAGAAGCAAGGAGTACGCCCACGTCTTTCAACGAGAACACCGAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGAAAACGGCACACGGACCGTACTCGAGCTTCAGATCAATGTCCCTTGAAGCAAGGAATAGCCAAAGTACGAAAACGGCGCACGAAATCGTACTTGAGCTTCAGATCAATATCCCTAGAAGCAAGGAGTACGCTCGTGTCTTTCAATGAGAATACTGAAAAAAAACCTAATTTAGCTCTACGTAAGATAGACAAAGTACAAAAATGGCGCACGGACTGTACTCGAGCTTTGGATCAATATCCTCATAAGCATGGAGTACACTCGCGTCTTTCAATGAGAACACTGAAAAAACCTAATTCAACTCTATGTAAGATAGACAAAGTACGTAAATGGCGCACGGACTGTACTCGAGCTTCGGATCAATATCCCTAG MVEKKNGVRTILELQINVSKSKEYACPKYENGAQTVLELWINIPRSQEYICVFQREHLKKPNSNPRKIAKVRKRRMDHTQASNQCPQKQSVRSCLSTRILKKHNSAPRKIAKVRKRHTDCTRASNQYSQKQGVRLRLSTRTLKKPNSTLCKINKVRKWHRDCTQASDQYPKKQGVCARPSTRTRKNLIQLNPKYENGARTVLELQINISRSKKYARVFQREHRKKPNSAPRKIAKVRKRCTDRTRALDQCPLKQRYENSAQTVLELQINIPRSKEYAHVFQREHRKKPNSAPRKIAKVRKRHTDRTRASDQCPLKQGIAKVRKRRTKSYLSFRSISLEARSTLVSFNENTEKKPNLALRKIDKVQKWRTDCTRALDQYPHKHGVHSRLSMRTLKKPNSTLCKIDKVRKWRTDCTRASDQYP Homology
BLAST of Carg16806 vs. NCBI nr
Match: KAG2611575.1 (hypothetical protein PVAP13_4KG104120 [Panicum virgatum]) HSP 1 Score: 68.9 bits (167), Expect = 1.2e-07 Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 0
BLAST of Carg16806 vs. NCBI nr
Match: XP_042751547.1 (ribosomal protein S12, mitochondrial-like [Lactuca sativa]) HSP 1 Score: 60.1 bits (144), Expect = 5.4e-05 Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of Carg16806 vs. NCBI nr
Match: KAF1855339.1 (hypothetical protein Lal_00015650 [Lupinus albus] >KAF1856919.1 hypothetical protein Lal_00002102 [Lupinus albus]) HSP 1 Score: 58.5 bits (140), Expect = 1.6e-04 Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of Carg16806 vs. NCBI nr
Match: AAB88456.1 (ribosomal protein S12 [Lupinus luteus] >AAB88460.1 ribosomal protein S12 [Lupinus mutabilis] >AAB88462.1 ribosomal protein S12 [Lupinus angustifolius]) HSP 1 Score: 58.5 bits (140), Expect = 1.6e-04 Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of Carg16806 vs. NCBI nr
Match: XP_023545340.1 (uncharacterized protein LOC111804778 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 58.5 bits (140), Expect = 1.6e-04 Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of Carg16806 vs. ExPASy Swiss-Prot
Match: P60096 (Ribosomal protein S12, mitochondrial OS=Magnolia grandiflora OX=3406 GN=RPS12 PE=2 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 1.7e-06 Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0
BLAST of Carg16806 vs. ExPASy Swiss-Prot
Match: P60097 (Ribosomal protein S12, mitochondrial OS=Magnolia soulangeana OX=3407 GN=RPS12 PE=2 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 1.7e-06 Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0
BLAST of Carg16806 vs. ExPASy Swiss-Prot
Match: P27070 (Ribosomal protein S12, mitochondrial OS=Panax ginseng OX=4054 GN=RPS12 PE=3 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 1.7e-06 Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0
BLAST of Carg16806 vs. ExPASy Swiss-Prot
Match: P28520 (Ribosomal protein S12, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPS12 PE=3 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 1.5e-05 Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0
BLAST of Carg16806 vs. ExPASy Swiss-Prot
Match: Q95869 (Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPS12 PE=3 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 1.9e-05 Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 0
BLAST of Carg16806 vs. ExPASy TrEMBL
Match: A0A6A5L832 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00002102 PE=3 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 7.6e-05 Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of Carg16806 vs. ExPASy TrEMBL
Match: A0A385G2D2 (Ribosomal protein S12 OS=Ammopiptanthus mongolicus OX=126911 GN=rps12 PE=3 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 7.6e-05 Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of Carg16806 vs. ExPASy TrEMBL
Match: Q7J5Z4 (Ribosomal protein S12 OS=Lupinus luteus OX=3873 GN=rps12 PE=3 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 7.6e-05 Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of Carg16806 vs. ExPASy TrEMBL
Match: A0A6A4P1M9 (Putative ribosomal protein S12/S23 OS=Lupinus albus OX=3870 GN=Lalb_Chr17g0337391 PE=3 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 7.6e-05 Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of Carg16806 vs. ExPASy TrEMBL
Match: O47435 (Ribosomal protein S12 OS=Lupinus albus OX=3870 GN=rps12 PE=3 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 7.6e-05 Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of Carg16806 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein ) HSP 1 Score: 48.1 bits (113), Expect = 2.0e-05 Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0
BLAST of Carg16806 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein ) HSP 1 Score: 48.1 bits (113), Expect = 2.0e-05 Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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