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Carg16794 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACTCCGTCTTTGCTGCTGCGACGAGCAACATAGCTATATGTTGCGTTTCGAAGGCCTTGAATCGGAGGCTCTCCGAAATTGTTCGTAGAAGATGCGTTCGCGGTGGTGACCGAGCTCGCAATTTCAGCTGCATTTCCAGTTACCTTGCTCTATACGGAACTGGACTTATTGGTTCTTCTTCACCGTCGCTTAGGACTCTGCAAGTTGTTTTGCCTTCGCTGCAGCGTCGTTTGCGTTGCGTTTCGAGTTCCTCTGTGTCTTTTGCATCTGGTGGCGGGAATGGTGGTTTTGGAGGGAATAATGGCGGCGGAGGTCGTGGTGGAGATGGTGGACTGGGCGGTGGAGATGCGAATAAGTTTGTTTCTGGAAGTGCCGAGGAGGTTTCTTCACTATTGCCTAACGTGATTATTCTGGATGTTGGAGTATGGATTTCGCATCGCTTCCTTGGTTATTGCTTTATCTTTTCATCGCACGTCTTCGTATTTTAACTCTACCGAAATCTTTGATGATTATTTTTATTCTGATTTTCTTCTGTGCAATATTATTGTAATTATTTTTTTTCTCATAGAAAAAAAAAAAATCGTAGGGAATGACATGCGGGGGATGTGCAGCAAGTGTGAAGAGAATACTAGAGAATCAGGTTATAGTTACTAA ATGGACTCCGTCTTTGCTGCTGCGACGAGCAACATAGCTATATGTTGCGTTTCGAAGGCCTTGAATCGGAGGCTCTCCGAAATTGTTCGTAGAAGATGCGTTCGCGGTGGTGACCGAGCTCGCAATTTCAGCTGCATTTCCAGTTACCTTGCTCTATACGGAACTGGACTTATTGGTTCTTCTTCACCGTCGCTTAGGACTCTGCAAGTTGTTTTGCCTTCGCTGCAGCGTCGTTTGCGTTGCGTTTCGAGTTCCTCTGTGTCTTTTGCATCTGGTGGCGGGAATGGTGGTTTTGGAGGGAATAATGGCGGCGGAGGTCGTGGTGGAGATGGTGGACTGGGCGGTGGAGATGCGAATAAGTTTGTTTCTGGAAGTGCCGAGGAGGTTTCTTCACTATTGCCTAACGTGATTATTCTGGATGTTGGAGTATGGATTTCGCATCGCTTCCTTGAAAAAAAAAAAATCGTAGGGAATGACATGCGGGGGATGTGCAGCAAGTGTGAAGAGAATACTAGAGAATCAGGTTATAGTTACTAA ATGGACTCCGTCTTTGCTGCTGCGACGAGCAACATAGCTATATGTTGCGTTTCGAAGGCCTTGAATCGGAGGCTCTCCGAAATTGTTCGTAGAAGATGCGTTCGCGGTGGTGACCGAGCTCGCAATTTCAGCTGCATTTCCAGTTACCTTGCTCTATACGGAACTGGACTTATTGGTTCTTCTTCACCGTCGCTTAGGACTCTGCAAGTTGTTTTGCCTTCGCTGCAGCGTCGTTTGCGTTGCGTTTCGAGTTCCTCTGTGTCTTTTGCATCTGGTGGCGGGAATGGTGGTTTTGGAGGGAATAATGGCGGCGGAGGTCGTGGTGGAGATGGTGGACTGGGCGGTGGAGATGCGAATAAGTTTGTTTCTGGAAGTGCCGAGGAGGTTTCTTCACTATTGCCTAACGTGATTATTCTGGATGTTGGAGTATGGATTTCGCATCGCTTCCTTGAAAAAAAAAAAATCGTAGGGAATGACATGCGGGGGATGTGCAGCAAGTGTGAAGAGAATACTAGAGAATCAGGTTATAGTTACTAA MDSVFAAATSNIAICCVSKALNRRLSEIVRRRCVRGGDRARNFSCISSYLALYGTGLIGSSSPSLRTLQVVLPSLQRRLRCVSSSSVSFASGGGNGGFGGNNGGGGRGGDGGLGGGDANKFVSGSAEEVSSLLPNVIILDVGVWISHRFLEKKKIVGNDMRGMCSKCEENTRESGYSY Homology
BLAST of Carg16794 vs. NCBI nr
Match: KAG7014880.1 (hypothetical protein SDJN02_22510, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 332.8 bits (852), Expect = 1.8e-87 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of Carg16794 vs. NCBI nr
Match: KAG6576859.1 (Copper-transporting ATPase PAA1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 255.8 bits (652), Expect = 2.8e-64 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
BLAST of Carg16794 vs. NCBI nr
Match: XP_022922942.1 (copper-transporting ATPase PAA1, chloroplastic isoform X1 [Cucurbita moschata]) HSP 1 Score: 255.8 bits (652), Expect = 2.8e-64 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
BLAST of Carg16794 vs. NCBI nr
Match: XP_023552687.1 (copper-transporting ATPase PAA1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 253.4 bits (646), Expect = 1.4e-63 Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0
BLAST of Carg16794 vs. NCBI nr
Match: XP_022984847.1 (copper-transporting ATPase PAA1, chloroplastic isoform X1 [Cucurbita maxima]) HSP 1 Score: 248.8 bits (634), Expect = 3.5e-62 Identity = 137/142 (96.48%), Postives = 139/142 (97.89%), Query Frame = 0
BLAST of Carg16794 vs. ExPASy Swiss-Prot
Match: Q9SZC9 (Copper-transporting ATPase PAA1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAA1 PE=1 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 6.9e-05 Identity = 55/142 (38.73%), Postives = 77/142 (54.23%), Query Frame = 0
BLAST of Carg16794 vs. ExPASy TrEMBL
Match: A0A6J1E4S2 (copper-transporting ATPase PAA1, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430770 PE=3 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 1.4e-64 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
BLAST of Carg16794 vs. ExPASy TrEMBL
Match: A0A6J1J3A7 (copper-transporting ATPase PAA1, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483005 PE=3 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 1.7e-62 Identity = 137/142 (96.48%), Postives = 139/142 (97.89%), Query Frame = 0
BLAST of Carg16794 vs. ExPASy TrEMBL
Match: A0A6J1CHL7 (copper-transporting ATPase PAA1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011574 PE=3 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 3.3e-50 Identity = 116/142 (81.69%), Postives = 125/142 (88.03%), Query Frame = 0
BLAST of Carg16794 vs. ExPASy TrEMBL
Match: A0A0A0L0P7 (HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G108510 PE=4 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 4.0e-48 Identity = 117/143 (81.82%), Postives = 122/143 (85.31%), Query Frame = 0
BLAST of Carg16794 vs. ExPASy TrEMBL
Match: A0A5A7TQZ7 (Copper-transporting ATPase PAA1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00460 PE=3 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 9.8e-47 Identity = 114/143 (79.72%), Postives = 124/143 (86.71%), Query Frame = 0
BLAST of Carg16794 vs. TAIR 10
Match: AT4G33520.2 (P-type ATP-ase 1 ) HSP 1 Score: 48.9 bits (115), Expect = 4.9e-06 Identity = 55/142 (38.73%), Postives = 77/142 (54.23%), Query Frame = 0
BLAST of Carg16794 vs. TAIR 10
Match: AT4G33520.1 (P-type ATP-ase 1 ) HSP 1 Score: 48.9 bits (115), Expect = 4.9e-06 Identity = 55/142 (38.73%), Postives = 77/142 (54.23%), Query Frame = 0
BLAST of Carg16794 vs. TAIR 10
Match: AT4G33520.3 (P-type ATP-ase 1 ) HSP 1 Score: 48.9 bits (115), Expect = 4.9e-06 Identity = 55/142 (38.73%), Postives = 77/142 (54.23%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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