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Carg16787 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAACTCCCTTTGAGGGAAAGGGGAGAGACTGAGAGAGAGACGGAGAGACGAAGGGGCGGAGGGGCGGAGGAGAAGCAATGGAGCACGAAGACGTCGACATGATTGGCTTGGAGACCAACGATGCTGCGGTTCGTCTTCCATTTTAATCCTTTTTTTTTTGTTCTCTTTCATTTCGATTCTTATATACCATCCTTTTGTTTTTGGTTGGTGTAAAAACCCTAATTGCTCTTTTTTCTCCTGGTTTTCAGGAGTTAGATGACATGAAGAAGCGGTTGAAAGAGATGGAAGATGAAGCTGCTGCTCTACGTGAGATGCAAGCCAAGGTCGAGAAGGAAATGAGTTCTGTACAAGGTTGGTTTATGCTCTTCTTCGCTTTTGTGAATTACTTTTGTGTTTTTGTACAATGTCATTGAGATATGGAGGCTCTTGGATTCTATTCGTCGTGTTAGTATTTACGATGTCTATCTTGGATCTTATTTGGTGAAATACTGAATAAGTAAGTCGAGTTTTGGTATTTGTTTGATTCTGAAGGTCGTCTTTTTGTTGGATGCAAGTTGAAAATGTTTCAATGTTTGAAGAAGGCGCATTTGGATCTCATGCAAAAAACTGACTCTTGCATTTGAATTCCATATTGTTGTAGCTATTCATTAACTGAGTAACTGATTTTTGAACTATCTCCGACTTGGAGATGATTCATTCTCATCTTAATCACAAAGTTGTAGTTTCTGATTAGGAGAAGTTTGCCTTGGGATGAGAACCTAATTATGGAGACATATTATTTGCTGATCATCCCGTACATGTTTTTAATCTAAATATATCTCTCATGCGAAAGAAGTTCAAGCAGTCTGTTACCGTTAAATGTTTAGCCACTTTTTGTACTACCAGATCCAGCAAGTGCTGCTGCAAGTCAAGCAAATAGGGAGGAAGTGGATGCACGGTCAGTGTTTGTTGGCAATGTATGATCTCTTTACCCTTGACCAATATATATATTTTCTTTTGCATATTTCTTCACTCGTACCCCACGATTGGCTGAACTTTAATTTAATGGGTGCAAGGATTCTCTCTGTTAATGTTAAATTCTTGAACAATATGTATTTACAGTTTGCACTACTTTTTATTTTTACTAGATTTGTTACTTCTATTTAGGTCATTCGTCATGAAGGGGAGCTAAGACTTGCTCTTCTTGTAGCTTTCTCTAAGAGTATTAATCTTTTGTCTTTCTTTTGTTCCATGCATTTGATATGATGAATGGAGCAATCTTATTGAAGTATTTGGTGACCTTTTTATATTTTGAATGGATTGGATTTATCAATAATTGAAGGTAAATTGGCAAGAGAAGCCACTGACTGGAGCTGTCTTCTTTATTGAACAATAGAAAGAGCTTTTTGAGCATGACTTTCTTTGAGAGTTCATTTACTTAATTATTGACATGGATTAAACTGACTAACTTTCATTCCTTGGTTTGTTCATTCCTCGTGTGGTCATAAAGATTTACTAAATTTCAGGTAGACATGGGTTGTTTCTTGTGGTACATATCATTCATGTCTTAGGAAGAGGTTGGATCATGCTTTACATTTTGAGGATGTTAAAGTGGTTGGTTGCTAGCAGTACTATTTTAGAGATGTTTGGAGGGATCATTATATTGTTATCTATCGTTCTGCCTTTTAAAAACATTGAAATCTATAAATAACTATTATGAATATTTTCCAAATAGATTGGTGCCATAAATTCAGTTCAATGTGGATAGTTACTTTTTAAATTTATATATGAACCATTTCTGTACTGTGCTTGAAGTTTTAGTATATGTCGGTGTTTCTAGCCTGATTTGACTCCCATGTTTGACTGCAATTACAGGTTAGGCTTACTTCGTCAGGTTTTCTGATTACCTATTGCTGAAGTCGGATATTCTCTGATATGTTATAAATAGCTATCTAGTATATAAAAAAAGTGTCTTGTCCCAAAAGAAAGAGCGGATAAAAATTGTGATAAAATGTATAAGGATAAGGTGTAAAATTTTCAAGAGGGTAATAGTTTTGGTTGAATCTTTTGAAAAGAGTGATGGAAGAAAAAAGTTGAGATGAGTTAACAAGAAAAGAAAATATACCTAAATATCATGTAGTCGTGCCTTGTTAGCTTAGTGGGTGGGCTCAGAGTCAGTCAATCTAACATGTCTCAAGTTTGAGGCCATGTGGTTAATGGGAAAGAGGAGTTGGTTAAAAAAAAAAAAAAAAAGAAAAAGAGGGAGAGAGCGAATAAACTCACCAGCCCAGAAAAGGGTATGTATGACTATGGATGAAGTCAGCAGAAGTTTTACTGGTTTGCTTGATTGAACTGGAAGGCTTGACAAGTTTTGAAGGGAAGTAATGTGCATTCACAACTAAGGAGGACTGGCTGTGGCGCTGAGGTATGTTATTGTCTTGTGTTGAAGCCAGCATTTGTGACCACTGTTCGAGGATTGTTTAAGTGATTTACAATCTATGGTGAGGGACCTCCAAATATCTCTGATTTTCCTGTCTCCTCCCTTAATCCATCAAGGAAAGGATAAAGGCATAATTAGGGAAGCTTTTATGTTTCTATTTCTACTTGTGGGAAATATTCATTTTTACCTTCGTAAATATCCCACTCAGTCAATTTTAACTTTAAAGTTTTAGTTTCATCGAGTTGAACTCTATGCTTGTATAGGGTATAAAATTAAGGCCTTCCTTGATTTGAAGTTCAAAAAAATTTGTGTAACTAACTGAAATTGTTCAAAATCTAACAAACCCAAAATACTGCTAGAAAAACTCCCAATGTCACCCAATGTAAAGACATCCCTGCTCAAAAATTATTAAGTATACATAGAAATAGTGTTCTCCAATCACAAGCACCCACACTTAACCTTCAATCTCAAAATGGGGAAAAAAAAAACCAACATAGGTTTTAAATTTGAACTTTTATTCAAGTTCAATTGGTCAAAATTCAAATTTAAAAATTAAATTGGACTCATTCAGCTAAGTACCCATCAGGATTTGTTTTTCTGAGTCAAATGTCTCTCCTTTCCATAGATGAATACGTGTTCCTTGGATGGTTTCTGTTTACTGGGTTATTACGTTATTACATTGTCATTCTTGTATGAATATTCTCTTATAATCATGGCCACTGGTCAAAAAAGCTGTTAGTCGTCTAGGATTTTTCAAGAGAACAAATGTGGAGAAATTAGAGTTGCATGGTGATTTCTTGTCTTCTCATGAATGGATATCCATTGGAATTAGAAGGAGACCTATTATTATGAACGATTGGGACATGACTTTTATTAATTAATTTAATTTTTATTTTCAGTTCGTTACAGGGTGATGTACTATGACTATCACAGAGTAATTATGAAAATGTGTGACTCATTTTATTGATTTAATTTTTTTGTGTGATTTACATTCTACTAATATTGATACCATATAAGTTAACTGATAAAAATCTGCGAGCCCTATTTTATTGGGGTTTTGTGGAATGTCAAATGTTCTGAGCTACTACGTTTGGAACAGGTGGATTACTCATGTACCCCAGAAGAAGTACAGCAACATTTTCAGTCATGTGGAACTGTAAACAGAATCACTATTCGTACCGATAAGTTTGGACAACCGAAGGGATATGCGTATGTTGAATTCCTTGAGACAGAAGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCAGAACTGCATGGTCGACAGCTGAAGGTTAACATGAGTTTTATATATTACTATATTAATGTTAGTTTAAGATTCTTCTACTGGAAAAAAAATGAATTTTTAAGTATGTTGCAGGTAACTGCCAAGAGAACAAACATACCTGGGATGAAGCAGTATCGTCCACGCCGATCCAATCCATATATGGGTGCTCGATCCAGGAGCCCATATGTTGCTCCTTATTTCTTCTCACCATATGGATACGGGTATGATCATTATTGAGTATAAATTTCCAATGCAAACCGCTTGCATCTCTTCCTCTCTTCCAAGTCGTTTACATAGTTCTTTCTGTTGCAGGAAAGTCCCAAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGAATGTTATTTTTGTTTGGGGCATTGTTGAATTAGAGATATCGTACTTAAATGTGTCTGCATGCCCTTTTATTTTTTTATGAAGGAAATTGATGTTTGGATATAATTTTAAGAGATCTTTTCCTGTTTAAAAGAAATGGAGTGTGAGTAAGCACGACGCAGGTCAATCCCTTCGAGCTCTATCACTGCGTATAGAAGAAGGCTCCTCTGGACTTGCTGCAGGTACGTTTTCATGATCCTAAGTATTTCACTTTGGAATTTTGTGCATTGTGTTTGAAGCTAAAAATAGAACCCAATACATACTGGTATTAAACGTTCTATATATCGAGTGCTTGCTATTTTGGTTCAATTCTGTGCATAGATTTATTGCTTTGT TAACTCCCTTTGAGGGAAAGGGGAGAGACTGAGAGAGAGACGGAGAGACGAAGGGGCGGAGGGGCGGAGGAGAAGCAATGGAGCACGAAGACGTCGACATGATTGGCTTGGAGACCAACGATGCTGCGGAGTTAGATGACATGAAGAAGCGGTTGAAAGAGATGGAAGATGAAGCTGCTGCTCTACGTGAGATGCAAGCCAAGGTCGAGAAGGAAATGAGTTCTGTACAAGATCCAGCAAGTGCTGCTGCAAGTCAAGCAAATAGGGAGGAAGTGGATGCACGGTCAGTGTTTGTTGGCAATGTGGATTACTCATGTACCCCAGAAGAAGTACAGCAACATTTTCAGTCATGTGGAACTGTAAACAGAATCACTATTCGTACCGATAAGTTTGGACAACCGAAGGGATATGCGTATGTTGAATTCCTTGAGACAGAAGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCAGAACTGCATGGTCGACAGCTGAAGGTAACTGCCAAGAGAACAAACATACCTGGGATGAAGCAGTATCGTCCACGCCGATCCAATCCATATATGGGTGCTCGATCCAGGAGCCCATATGTTGCTCCTTATTTCTTCTCACCATATGGATACGGGAAAGTCCCAAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGAATGTTATTTTTGTTTGGGGCATTGTTGAATTAGAGATATCGTACTTAAATGTGTCTGCATGCCCTTTTATTTTTTTATGAAGGAAATTGATGTTTGGATATAATTTTAAGAGATCTTTTCCTGTTTAAAAGAAATGGAGTGTGAGTAAGCACGACGCAGGTCAATCCCTTCGAGCTCTATCACTGCGTATAGAAGAAGGCTCCTCTGGACTTGCTGCAGGTACGTTTTCATGATCCTAAGTATTTCACTTTGGAATTTTGTGCATTGTGTTTGAAGCTAAAAATAGAACCCAATACATACTGGTATTAAACGTTCTATATATCGAGTGCTTGCTATTTTGGTTCAATTCTGTGCATAGATTTATTGCTTTGT ATGGAGCACGAAGACGTCGACATGATTGGCTTGGAGACCAACGATGCTGCGGAGTTAGATGACATGAAGAAGCGGTTGAAAGAGATGGAAGATGAAGCTGCTGCTCTACGTGAGATGCAAGCCAAGGTCGAGAAGGAAATGAGTTCTGTACAAGATCCAGCAAGTGCTGCTGCAAGTCAAGCAAATAGGGAGGAAGTGGATGCACGGTCAGTGTTTGTTGGCAATGTGGATTACTCATGTACCCCAGAAGAAGTACAGCAACATTTTCAGTCATGTGGAACTGTAAACAGAATCACTATTCGTACCGATAAGTTTGGACAACCGAAGGGATATGCGTATGTTGAATTCCTTGAGACAGAAGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCAGAACTGCATGGTCGACAGCTGAAGGTAACTGCCAAGAGAACAAACATACCTGGGATGAAGCAGTATCGTCCACGCCGATCCAATCCATATATGGGTGCTCGATCCAGGAGCCCATATGTTGCTCCTTATTTCTTCTCACCATATGGATACGGGAAAGTCCCAAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGA MEHEDVDMIGLETNDAAELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQANREEVDARSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFLETEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPYMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY Homology
BLAST of Carg16787 vs. NCBI nr
Match: KAG7014873.1 (Polyadenylate-binding protein 3 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 387.5 bits (994), Expect = 6.9e-104 Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
BLAST of Carg16787 vs. NCBI nr
Match: XP_023552244.1 (polyadenylate-binding protein 2-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG6576852.1 Polyadenylate-binding protein 3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 382.9 bits (982), Expect = 1.7e-102 Identity = 197/198 (99.49%), Postives = 197/198 (99.49%), Query Frame = 0
BLAST of Carg16787 vs. NCBI nr
Match: XP_022985014.1 (polyadenylate-binding protein 2-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 381.7 bits (979), Expect = 3.8e-102 Identity = 196/198 (98.99%), Postives = 197/198 (99.49%), Query Frame = 0
BLAST of Carg16787 vs. NCBI nr
Match: XP_022922978.1 (polyadenylate-binding protein 2-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 381.3 bits (978), Expect = 4.9e-102 Identity = 196/198 (98.99%), Postives = 197/198 (99.49%), Query Frame = 0
BLAST of Carg16787 vs. NCBI nr
Match: XP_022140995.1 (polyadenylate-binding protein 2-like isoform X1 [Momordica charantia]) HSP 1 Score: 377.9 bits (969), Expect = 5.5e-101 Identity = 191/197 (96.95%), Postives = 194/197 (98.48%), Query Frame = 0
BLAST of Carg16787 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 3.3e-77 Identity = 146/192 (76.04%), Postives = 166/192 (86.46%), Query Frame = 0
BLAST of Carg16787 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 8.2e-76 Identity = 142/192 (73.96%), Postives = 161/192 (83.85%), Query Frame = 0
BLAST of Carg16787 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 1.8e-62 Identity = 122/183 (66.67%), Postives = 149/183 (81.42%), Query Frame = 0
BLAST of Carg16787 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 1.3e-33 Identity = 88/174 (50.57%), Postives = 113/174 (64.94%), Query Frame = 0
BLAST of Carg16787 vs. ExPASy Swiss-Prot
Match: Q9DDY9 (Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 4.3e-32 Identity = 89/208 (42.79%), Postives = 125/208 (60.10%), Query Frame = 0
BLAST of Carg16787 vs. ExPASy TrEMBL
Match: A0A6J1JC38 (polyadenylate-binding protein 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483107 PE=4 SV=1) HSP 1 Score: 381.7 bits (979), Expect = 1.8e-102 Identity = 196/198 (98.99%), Postives = 197/198 (99.49%), Query Frame = 0
BLAST of Carg16787 vs. ExPASy TrEMBL
Match: A0A6J1E8B7 (polyadenylate-binding protein 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430800 PE=4 SV=1) HSP 1 Score: 381.3 bits (978), Expect = 2.4e-102 Identity = 196/198 (98.99%), Postives = 197/198 (99.49%), Query Frame = 0
BLAST of Carg16787 vs. ExPASy TrEMBL
Match: A0A6J1CGQ3 (polyadenylate-binding protein 2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011513 PE=4 SV=1) HSP 1 Score: 377.9 bits (969), Expect = 2.6e-101 Identity = 191/197 (96.95%), Postives = 194/197 (98.48%), Query Frame = 0
BLAST of Carg16787 vs. ExPASy TrEMBL
Match: A0A5A7V2R3 (Polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold652G00160 PE=4 SV=1) HSP 1 Score: 373.6 bits (958), Expect = 5.0e-100 Identity = 187/197 (94.92%), Postives = 194/197 (98.48%), Query Frame = 0
BLAST of Carg16787 vs. ExPASy TrEMBL
Match: A0A1S3CHX7 (polyadenylate-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501153 PE=4 SV=1) HSP 1 Score: 373.6 bits (958), Expect = 5.0e-100 Identity = 187/197 (94.92%), Postives = 194/197 (98.48%), Query Frame = 0
BLAST of Carg16787 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 289.3 bits (739), Expect = 2.4e-78 Identity = 146/192 (76.04%), Postives = 166/192 (86.46%), Query Frame = 0
BLAST of Carg16787 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 284.6 bits (727), Expect = 5.9e-77 Identity = 142/192 (73.96%), Postives = 161/192 (83.85%), Query Frame = 0
BLAST of Carg16787 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 263.5 bits (672), Expect = 1.4e-70 Identity = 132/178 (74.16%), Postives = 151/178 (84.83%), Query Frame = 0
BLAST of Carg16787 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 ) HSP 1 Score: 240.4 bits (612), Expect = 1.3e-63 Identity = 122/183 (66.67%), Postives = 149/183 (81.42%), Query Frame = 0
BLAST of Carg16787 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 ) HSP 1 Score: 219.9 bits (559), Expect = 1.8e-57 Identity = 119/220 (54.09%), Postives = 149/220 (67.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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