Carg16639 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16639
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 8678264 .. 8681881 (-)
RNA-Seq ExpressionCarg16639
SyntenyCarg16639
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGACTAACATCCAATTGGGATTTCTTCGAAAAATGAATCGTTCCAGGCTTCGGATTCGTGCATCGTTCGTCGTGCTTTGAATTTTCATATTTGCAGGTAATTGTTGTTATCTATGAATTCCGTTGAGCTTTGGATTATATTCGAATGAGAATGAATTTGAATGTGCTATGTTTGTTGCAGCATAGATTCTTTAGCTTAGGCAGCAATGGTGGGGAGTTCAAAATGGTTTGTACGAATCAACATGTTTCACTGAATTAGATAGTAGTACAAGATGAAGTATGTGAAGCCGTTGAACTTGTTTCGTGATTTGTTGAAGAGAAATGTCCTTGAACGTGGCCGTTTTCTCGGTTTAGATGTTGGTGATAAGTACGTTGGCTTGGCCGTCTCGGACTCGGATAATTAAATCGCTTCACCTCTTAGGTATTTTCTTTGTCTGTTCATGAGATTGTGTCTGAGAGATTGGTCTTAATGGGATTGAATTTGAAGTTAACAGAACGTGACCATTACTAGTTGTTGTTGCTTTGCTGCAGTGTTCTGCTGAGGAATAAACAAAGATTCATTTGATGGCTCGGGATTTTCAGATATTGGTGAGATTTTTTACTCTGTTTTTTTAATCTTCTTCCTTCCCGTGAAGATTTGTAGAATGGTAATTAGATGTTGTAACAGCCCAAATCTTGTGCGTGTAGTTATTGCACTCTTTGGGTTTTTTGTCTCTCAGGGAGAGGTTTCTACGCCCTTATAATGAATGCTTAGTTCCTTATAAAGAATACTTTGTTCCCCTCTTTAACTGACGCAGGATCTCACAATCCACTCTCCTTCGGGGTGCAGCGTCCTCGCTGGCACTCGTACCCCTCTCCAATTGATGGGACCTCCTAACCCACCCCCTTCGAGGCCCAACGTTCTCGCTGGCACACCGCTTGGTGTCCCTCATCTTCGGGGTTCAGCCTCCTCGCTTGCACATCGCCCGATGTTTGGCTTTGATATTATTTGTAACAGCCCAAGTCCATTGCTAGCAGATATTGTCCTCTTTAGATTTCCCTTCAAGGTTTTAAAACGCATATGCTTAGGAGAGATTTTCACGACATTATAAAGAATGTTATGATAAACAGTGATCGAAGGCGGTGCCACCCAATTTTGCAGGATGAACTTTAATTTACTTGATTTTTTGGGAGTACCATTTTAGGTGCAAATGAGATTTCTTATGACGACACTATGATTAGAATGTAGTTAGTTATACAGCTCTAAATGTACCTTTTCTTTCCCTCTTTTCCTGTGATGTGTTGCTGTGCAGTGTATTTGTCAATAATCTTAACATATGATAGTGAATTGTCAATGCTGTTCTTTCTTTCAACATTCACAGTCATCCCCGTCCTCTGTATATTTACAGCTGCTTCTGGTTTGTGTATACAGATCCCTGAACTCTCTCTGGCGGGGTTCATTGTTGGGCACCCTTTTGATGGACAATGTCGCAACCCGGATGTGTGTTCCATCTTTACATCAAAGGTTAGTTCATCTAGTTTGGCAAGCCATTCCTGTTAGTCTTATGACTTATGTGACATGACTTTCAATGTCTTTGTCAATGCACTAACTCAGTCAAACGAGTGTGATTATGTTTGAATTGTCTATGTCGACAAGCTGTTAAAATCCTCTAATTTTCGTGACATTGACTTGTGAATGGGCTACTACACTGTATTTCATTCGACATTCAATTTTATTGTGAGATCCCATATCGATTGGAGAAGGGAACGAGTGTCAGCGAGGACGCTGGGCTCCGAAGGGGGTGGATTATGAGATCCCACATCGGTTGAAGAAGAAAACGAAACATTCTTTATTAGGGTGTGGAAACCTCTCTCTAGTAAATGCAGTTTAAAAACCTTAAGAGGAAGTCTAAAAGGGAAAGCCCGAAAAAAACAATACCCGAAAACGGTGCCCTTGAGCGGTTACATTTATATTTGTGATTCCTTATATCTATGCACAGAATGTGGAACTACTGATAAAGCCATTGAAACTGCCCCCCTATTTTGTCAAGGACAATAATTGACAAGTTTGCTGCTGTTGGAATACTTCAGGTAATCTACAATTTTCTCTTTTTCTTTGGTTTAAGCCTTTCAAGTATCTTGACAAGGTTGGCTGGTAAAATGCAAATCCAGTTTTCACAATGTAAGAAATGTATCTTAAAATATCAATTAAAGCTTCAGTGCATTGACAGTGAAGTCGTATATCCCAGGGTTGCTTGGATTATCTTAACAGAAGACAGGAATTGGAAGCGAGGTAAAGCGAATAAGATGAACTGTACAGGATAAGGTACTGATTTGTCAATGAAGTTGCTTTCTTTGAAAATTGAAATTTCGAAATCTTGCTGAAATGTCAACAAAAACTTCTGTACTCTTAGAAATTTCAGAATAATATAAAAAATTAACCTCTGAATTTAGAAATGTAATTCTGTTCGTATATTAAAACCGACTAAAACGGTGAAAGGGTAAAATACATTTTTGTCTTTGGGTTTTGAACGTGGTTGCTAATGCCAAATCTACTTGGAGACCATTTAGAAATTGTGAGATCCCATATCGATTGGAGAGGGGAACGAAACATTTTTTATAAGGGTGTGGAAACCTCTTTTTAGGAGACTCATTTTAAAACCTTAAGTGGAAGTCCAAAAGGAAAGTTCAAAGACGACAATATTTGCTAGCGGTAAGCTTAGATTGTTACAGAAACAAACTCCAAACTTAGACAATATCTACAAAATGACTAGTTAGAAGCCGAGTTATCCTTTAGAGACCAAACATACCATTTTTGAAGCCACGAAGAACCAGACAAAAACTAAATTCAAATCTCAAGAACTAAAAGTATTAGCTTTGAATTTCATGGACAACATCGAAACTAAGTTCAAACTCCATGGACCGAACCGAAAGTGTATTTGAGCCGAGTAGTCGTATTTGCAAGTTCTAAAAGACGGTTTGGTTAGTATTTTGATCAATATATGCATACATTTGATTCTCCCCTCTTAGTTCAGGACAGAACAGTTTATTTTGAATTTCTCAGTCCAGAAAGGGAAGAGATGGATCTACTTTGATATTATCTTCAATTTTATCTTAAATGAGTGAATTATCTGATGATCTGCTCATAATCGAGTAATTAAGCTAACAGGATTCCTCTTTTTAGAATTTTCCTTATGGGAATTCTATCAAGTGCTTGTTTCCATGTTTGTTCATTTCTAAATTATTACTAATGACAACCATTATACCATATACTCTGTCTATTTTACAGATCATGCTTATATATTTTTCAAATGACTTCTATTGTCCATATGTTCTTTAATATGCTGATTATCTTTTTTTGGTTAATATGCTTGGCTGTGGAATATGTTGAATGAGTTGTGTTTATGAATTACGTTCACAACATTTCAAAGATAAATATGCTTTTCAGGCGTCGAGACACGGCTATGTTTTACAAACTGAACGGTAATTTCTACTCGTCCCGAGTTTTTATTAGATATTGGATTAAGGTCTTAAGATCATTAATTAATTTGACTATGTTAATTTGAATTGTAAATGTTCTGAATTCTATTACTTTAGGTAAACTATAGAGCTTAATTTGAGTAATTATAGTTAATTAGTT

mRNA sequence

TGACTAACATCCAATTGGGATTTCTTCGAAAAATGAATCGTTCCAGGCTTCGGATTCGTGCATCGTTCGTCGTGCTTTGAATTTTCATATTTGCAGCATAGATTCTTTAGCTTAGGCAGCAATGGTGGGGAGTTCAAAATGATCCCTGAACTCTCTCTGGCGGGGTTCATTGTTGGGCACCCTTTTGATGGACAATGTCGCAACCCGGATGTGTGTTCCATCTTTACATCAAAGGTAATCTACAATTTTCTCTTTTTCTTTGGTTTAAGCCTTTCAAGTATCTTGACAAGGGTTGCTTGGATTATCTTAACAGAAGACAGGAATTGGAAGCGAGGTAAAGCGAATAAGATGAACTGTACAGGATAAGGCGTCGAGACACGGCTATGTTTTACAAACTGAACGGTAATTTCTACTCGTCCCGAGTTTTTATTAGATATTGGATTAAGGTCTTAAGATCATTAATTAATTTGACTATGTTAATTTGAATTGTAAATGTTCTGAATTCTATTACTTTAGGTAAACTATAGAGCTTAATTTGAGTAATTATAGTTAATTAGTT

Coding sequence (CDS)

ATGATCCCTGAACTCTCTCTGGCGGGGTTCATTGTTGGGCACCCTTTTGATGGACAATGTCGCAACCCGGATGTGTGTTCCATCTTTACATCAAAGGTAATCTACAATTTTCTCTTTTTCTTTGGTTTAAGCCTTTCAAGTATCTTGACAAGGGTTGCTTGGATTATCTTAACAGAAGACAGGAATTGGAAGCGAGGTAAAGCGAATAAGATGAACTGTACAGGATAA

Protein sequence

MIPELSLAGFIVGHPFDGQCRNPDVCSIFTSKVIYNFLFFFGLSLSSILTRVAWIILTEDRNWKRGKANKMNCTG
Homology
[Close]
BLAST of Carg16639 vs. NCBI nr
Match: KAG7016965.1 (hypothetical protein SDJN02_22076 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.2 bits (409), Expect = 1.8e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MIPELSLAGFIVGHPFDGQCRNPDVCSIFTSKVIYNFLFFFGLSLSSILTRVAWIILTED 60
          MIPELSLAGFIVGHPFDGQCRNPDVCSIFTSKVIYNFLFFFGLSLSSILTRVAWIILTED
Sbjct: 1  MIPELSLAGFIVGHPFDGQCRNPDVCSIFTSKVIYNFLFFFGLSLSSILTRVAWIILTED 60

Query: 61 RNWKRGKANKMNCTG 76
          RNWKRGKANKMNCTG
Sbjct: 61 RNWKRGKANKMNCTG 75

[Close]
BLAST of Carg16639 vs. NCBI nr
Match: KAG6579503.1 (hypothetical protein SDJN03_23951, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 8.4e-10
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1  MIPELSLAGFIVGHPFDGQCRNPDVCSIFTSK 33
          +IPELSLAGFIVGHPFDGQCRNPDVCSIFTSK
Sbjct: 8  LIPELSLAGFIVGHPFDGQCRNPDVCSIFTSK 39

The following BLAST results are available for this feature:
BLAST of Carg16639 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016965.11.8e-36100.00hypothetical protein SDJN02_22076 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6579503.18.4e-1096.88hypothetical protein SDJN03_23951, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg16639 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16639 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16639 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16639-RACarg16639-RAmRNA