Carg16632 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16632
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 8760931 .. 8762892 (-)
RNA-Seq ExpressionCarg16632
SyntenyCarg16632
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTACAAGCATCGCCCACTGGTTTTTGTCTCGCTCATCAATGGCAGCCCTGGTAAGCGATAATACGACATCGTTTCCGCAAATACCGAGACCCTCTACACCACAGTACGACGTCGTACGCAGGACAATCCAATGCCAAAACTGCGAAGGGTAACATGGAATTGGGGCATAGCGAGGGAAAGCAACCTCACAATTGCTTGAGTGTAAAGCTTTCTTTCTGCAAATTGGCAGTCCATTTCGCCATTAATCAATCCAAGAACCAATACCCATAATTCACCTTTCTTCCCTTTTCGTTTTCTATATTTGTCCCATTTCATTCCCTTTTCTTTCCCCTCTTCGTCTTCTTCGTTTTCCCCTGTTTTTCCCCTCTTTTTCATAGCTGTTTTCACTGTTCTTGTACGAGCAATGGGTCCATCTCTGTTCCCTTCATTTGCTTATTGCGGATTCAAGCAGACCCAGGTGCCCCATTTCTCTGTTTCTTTCCATTTTTTGCTATTTACTTTGCTCTGCATGTGTAATAGTTCTTCACTTGTCACTAACACTGAGTGGAAAGAGTTCCTTTATCTTTCATTTTTGTAGCCCCATCAAACCCACTTTTTATTTTCCTTTCCTTTCTCTGGAAACAATCAGAAACGGTCCCTGCTCTTATCTTGGCTTACTTGTTAGTGCTATTTTGCTTGTTGCTAACATTAAGATGGCCTACCACTTCAGTTTTCTGTGGGGAAATGATATGAACACTTGAGAAAACTTGGCCAATGGCCAAACAATTTCACTCAATACTCAAAACATAGCTTGTTACCTTTCTTACTTTGTTTCATTTGAAAGAATGGGAAGACAATATCTTAGGAACTGTTTGTTTATTTGTATAAGGCGATTTTAACTGAAGCAGGGCTTCTTGATTCTGTTCTGATGTATCCTTAATTCTAGTTTGCATTCTGTTTTATTTACTGATGGAAAAGTGTAGATCAAGATAATGATTCTTTTTTTGTTCTTTTTTGATATTTGGGAAGACAATCTGTTTTGTGCTCTTTAGTAAAAGTGGTTCCATTTTGGGTACTCCTTTTTTCTTTTATCACTGAGAACCATGGTTAATCATTCACCATGCCGACAGGGTAATCAACAAGATTAGTATCACGGGAGAAAAAGGCTGATCGGCATGGAGCAGGGGAGGCTGTTCTTGGAACAATTGTCCTTGAATTATTATCAGCTGGTAAGAAATCCTCGAGATTCAATGGTGTCTGGTGAAAGGATGTCTTTCTTGCTTCGTAATTGAACTTTTTTGTTGAAATTCTTGGGTGTTCATATATGTTTTACTAGCATGCAATTGGTTGAAGTGTTCTTCCATTGATGTGTTTTGGGTATCTCACTAGTAACTGTGGTTCTGTTTCTTTGTTTATTCTCGCTAATTGTTCTTCGTTCATTTCCTAGTGTCATTGCTGAATACTTAGCATTACGAATCTTGTGTCACCTAAGTTATGCCATTTATTTTACTTTGGATCTTCAAATGATGTATGATCCAAAATGGTGTACGTTTCCATTATTATTAAGTAGCTTAACTGCAGGTACCGTAAATGTAACAACCTAAGTCCACCACTAGTAGATATTGTTCTTTTGAACTTCCACTTTCGGGTTTCCCCTCAGGTTATTAAAATGCGTCTCCACACCCTTATAAAGAATGCTTTGTTCTCCTCCCTCTCACAATCCACCCCTATTTGCACTAGTTCCCTTCTCCAATCAATGTGGGACCCCCCAACCCACTCCCCTTCGGGGCCCAGCGTTCTTGCTGGCACACCGCCTTGTGTCCACCCCACTCAGGGCTCAGTCTCCTCGCTAGCACATTGCCATGTGTTTGGCTCTGATACCATTTGTAACAGCCCAAGCCCACCGCTAGCAGATATTGTTCTCTTTGGGCTTTCCCTTTTGGGCTTCTCCTCAAAGATTTTGAAACGCGTATACTAG

mRNA sequence

ATGGCGTACAAGCATCGCCCACTGGTTTTTGTCTCGCTCATCAATGGCAGCCCTGCTGTTTTCACTGTTCTTGTACGAGCAATGGGTCCATCTCTGTTCCCTTCATTTGCTTATTGCGGATTCAAGCAGACCCAGGTTATTAAAATGCGTCTCCACACCCTTATAAAGAATGCTTTGTTCTCCTCCCTCTCACAATCCACCCCTATTTGCACTAGTTCCCTTCTCCAATCAATGTGGGACCCCCCAACCCACTCCCCTTCGGGGCCCAGCGTTCTTGCTGGCACACCGCCTTGTGTCCACCCCACTCAGGGCTCAGTCTCCTCGCTAGCACATTGCCATGTGTTTGGCTCTGATACCATTTGTAACAGCCCAAGCCCACCGCTAGCAGATATTGTTCTCTTTGGGCTTTCCCTTTTGGGCTTCTCCTCAAAGATTTTGAAACGCGTATACTAG

Coding sequence (CDS)

ATGGCGTACAAGCATCGCCCACTGGTTTTTGTCTCGCTCATCAATGGCAGCCCTGCTGTTTTCACTGTTCTTGTACGAGCAATGGGTCCATCTCTGTTCCCTTCATTTGCTTATTGCGGATTCAAGCAGACCCAGGTTATTAAAATGCGTCTCCACACCCTTATAAAGAATGCTTTGTTCTCCTCCCTCTCACAATCCACCCCTATTTGCACTAGTTCCCTTCTCCAATCAATGTGGGACCCCCCAACCCACTCCCCTTCGGGGCCCAGCGTTCTTGCTGGCACACCGCCTTGTGTCCACCCCACTCAGGGCTCAGTCTCCTCGCTAGCACATTGCCATGTGTTTGGCTCTGATACCATTTGTAACAGCCCAAGCCCACCGCTAGCAGATATTGTTCTCTTTGGGCTTTCCCTTTTGGGCTTCTCCTCAAAGATTTTGAAACGCGTATACTAG

Protein sequence

MAYKHRPLVFVSLINGSPAVFTVLVRAMGPSLFPSFAYCGFKQTQVIKMRLHTLIKNALFSSLSQSTPICTSSLLQSMWDPPTHSPSGPSVLAGTPPCVHPTQGSVSSLAHCHVFGSDTICNSPSPPLADIVLFGLSLLGFSSKILKRVY
Homology
[Close]
BLAST of Carg16632 vs. NCBI nr
Match: KAG7016972.1 (hypothetical protein SDJN02_22083, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.1 bits (775), Expect = 1.3e-78
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MAYKHRPLVFVSLINGSPAVFTVLVRAMGPSLFPSFAYCGFKQTQVIKMRLHTLIKNALF 60
           MAYKHRPLVFVSLINGSPAVFTVLVRAMGPSLFPSFAYCGFKQTQVIKMRLHTLIKNALF
Sbjct: 1   MAYKHRPLVFVSLINGSPAVFTVLVRAMGPSLFPSFAYCGFKQTQVIKMRLHTLIKNALF 60

Query: 61  SSLSQSTPICTSSLLQSMWDPPTHSPSGPSVLAGTPPCVHPTQGSVSSLAHCHVFGSDTI 120
           SSLSQSTPICTSSLLQSMWDPPTHSPSGPSVLAGTPPCVHPTQGSVSSLAHCHVFGSDTI
Sbjct: 61  SSLSQSTPICTSSLLQSMWDPPTHSPSGPSVLAGTPPCVHPTQGSVSSLAHCHVFGSDTI 120

Query: 121 CNSPSPPLADIVLFGLSLLGFSSKILKRVY 151
           CNSPSPPLADIVLFGLSLLGFSSKILKRVY
Sbjct: 121 CNSPSPPLADIVLFGLSLLGFSSKILKRVY 150

[Close]
BLAST of Carg16632 vs. NCBI nr
Match: KAG7016605.1 (putative RNA helicase SDE3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-13
Identity = 55/111 (49.55%), Postives = 60/111 (54.05%), Query Frame = 0 

Query: 50  RLHTLIKNALFSS-----------LSQSTPICTSSLLQSMWDPPTHSPSGPSVLAGTPPC 109
           R HTLI   LF S            + +    T S LQSMWD    +P G SVL GTPP 
Sbjct: 856 RFHTLINGGLFFSPTNVGYHNPPPSASNVLAGTLSFLQSMWDCLKSTPFGASVLTGTPPR 915

Query: 110 VHPTQGSVSSLAHCHVFGSDTICNSPSPPLADIVLFGLSLLGFSSKILKRV 150
           V+P +G    L H  VFGSDTICN P PPL DIV FGL L     K LKRV
Sbjct: 916 VYPLRGIARRLTHHPVFGSDTICNDPDPPLTDIVFFGLPL-----KALKRV 961

[Close]
BLAST of Carg16632 vs. NCBI nr
Match: KAG7020717.1 (WD repeat-containing protein DWA2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-12
Identity = 53/115 (46.09%), Postives = 68/115 (59.13%), Query Frame = 0 

Query: 36  FAYCGFKQTQVIKMRLHTLIKNALFSSLS----QSTPICTSS-----LLQSMWD---PPT 95
           F+   F  T+++    HTLI N  FSS +     + P+  +      L  S  D   PP 
Sbjct: 288 FSLMSFPITRLLGKGFHTLINNVSFSSPTNVGYHNPPLFRAQRPRWLLFLSPIDVRPPPN 347

Query: 96  HSPSGPSVLAGTPPCVHPTQGSVSSLAHCHVFGSDTICNSPSPPLADIVLFGLSL 139
             PS  ++L GTP CV+P +G VSSLAHC +  SDTIC+ P+PPLADIVLFGLSL
Sbjct: 348 PPPSESNILTGTPSCVYPLRGIVSSLAHCPMSISDTICDGPNPPLADIVLFGLSL 402

[Close]
BLAST of Carg16632 vs. NCBI nr
Match: KAG7016581.1 (NAC domain-containing protein 86, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-09
Identity = 41/70 (58.57%), Postives = 48/70 (68.57%), Query Frame = 0 

Query: 82  PTHSPSGPSVLAGTPPCVHPTQGSVSSLAHCHVFGSDTI-CNSPSPPLADIVLFGLSLLG 141
           P   P G SVL GTPP V+P +G+V  LAH  + GSDTI CN+P PPLADI+LFGLSL  
Sbjct: 558 PKSIPFGTSVLPGTPPRVYPIRGTVRKLAHRSMSGSDTIWCNAPDPPLADIILFGLSL-- 617

Query: 142 FSSKILKRVY 151
              K LK V+
Sbjct: 618 ---KALKHVF 622

[Close]
BLAST of Carg16632 vs. NCBI nr
Match: KAG7029790.1 (4-coumarate--CoA ligase 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-08
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 71  TSSLLQSMWDPPTHSPSGPSVLAGTPPCVHPTQGSVSSLAHCHVFGSDTICNSPSPPL 129
           T SLLQS+WDPP H  SG S+LAGTP  VHP QG  S LA+  +FG D I N PSPP+
Sbjct: 512 THSLLQSVWDPPIHPFSGSSILAGTPLRVHPFQGLASLLAYYPMFGFDIIYNEPSPPV 569

The following BLAST results are available for this feature:
BLAST of Carg16632 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016972.11.3e-78100.00hypothetical protein SDJN02_22083, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7016605.12.5e-1349.55putative RNA helicase SDE3 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7020717.11.2e-1246.09WD repeat-containing protein DWA2, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7016581.13.7e-0958.57NAC domain-containing protein 86, partial [Cucurbita argyrosperma subsp. argyros... [more]
KAG7029790.11.9e-0862.074-coumarate--CoA ligase 1, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg16632 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16632 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16632 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16632-RACarg16632-RAmRNA