Carg16580 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16580
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr14: 12986542 .. 12987622 (-)
RNA-Seq Expression	Carg16580
Synteny	Carg16580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGAATTTGGCTTCCCTGCCTAGACTTGGTGGGTACTGTCCACTGTAATAACGTACCAGGAAATTGTTGGGGTCTTGGATTTGGAGTGGGGTTGTAATCCTTCTCATAAGAAAACAATTTGTAAAGAGTGCCTTCATCGCCTTCTCTTTGCTAGCCTTAAATGCAAATTTAGTCGTATCGTCGAGGTTTTGATTACTTCACCTTTCGAGTTTCCTGTCTATTTGGTTATTGGTCAAAAACGTATTGCGTATACGACAATACCCTGAAACCTCACCTCTGCTAAATAGAGCTCAAGTATTTTTCTCTTTTGTTTCTTTTCCATCCATTCAATAATATTTCCTTTCTGTGTATCTGTTTCAAAATCAAACGAATATTTAATCCAATCCCTCACCTTAGACAAATCCCATTTGCTATCCAAGCAAAACAAAGTTCTTCCCTTTGACTTTCATCTTCTGCCTGCTTTGCTGGAAATTTCCTCGCATGAACTCCACCATGAAAGTCGCTGTCTTTCGGCTCATTCTTATAATGCTACACACATCATGCCTGATACATACACACATACATATCTCTTGAAGTCCTCAAGAATGTTCCTGTTCAAATCAAAGTTGCCTCTATTAGTGGTTAGGAGAGGACCCATTCAATTCTGTCGAGGCTTTGGTCAAATCCTTGCAGCTTGTACAATAATCCAAAACTTGACACTCTTCATTTTACTATAAATATCGTTGCAATCCCATCAACAAACTCAACCTCTTCTTTCATTTAATCTCTCGAAAGGGAAACAGAAACAGAATATGAAAATTCTTCACATATCTCTTACTCTGGCAATGGTTTTCCTTCTTTTTCTCTTGCAGCTTCACCCAAACATAGCTGGTAGAACTCTGCATGAGAACCCATCAATGGTGAGAAGAACGGAGCTGAAGCTGAAGCTGAAGCTGCAGTCTCTTCAAAGGGTCAGTGTACCGCCCTCCGGCCCCTCTGGTTGCACCTTCATTCCCGGCACCAACGGCCCCGGCTGTCCCCAGAAAGTGAGGCACTACACCATCAACCATTCGACTCGACGTCCAAGCGCTCACTGA

mRNA sequence

ATGGATGGAATTTGGCTTCCCTGCCTAGACTTGCTTCACCCAAACATAGCTGGTAGAACTCTGCATGAGAACCCATCAATGGTGAGAAGAACGGAGCTGAAGCTGAAGCTGAAGCTGCAGTCTCTTCAAAGGGTCAGTGTACCGCCCTCCGGCCCCTCTGGTTGCACCTTCATTCCCGGCACCAACGGCCCCGGCTGTCCCCAGAAAGTGAGGCACTACACCATCAACCATTCGACTCGACGTCCAAGCGCTCACTGA

Coding sequence (CDS)

ATGGATGGAATTTGGCTTCCCTGCCTAGACTTGCTTCACCCAAACATAGCTGGTAGAACTCTGCATGAGAACCCATCAATGGTGAGAAGAACGGAGCTGAAGCTGAAGCTGAAGCTGCAGTCTCTTCAAAGGGTCAGTGTACCGCCCTCCGGCCCCTCTGGTTGCACCTTCATTCCCGGCACCAACGGCCCCGGCTGTCCCCAGAAAGTGAGGCACTACACCATCAACCATTCGACTCGACGTCCAAGCGCTCACTGA

Protein sequence

MDGIWLPCLDLLHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVRHYTINHSTRRPSAH

Homology

[Close]

BLAST of Carg16580 vs. NCBI nr
Match: KAG7018772.1 (hypothetical protein SDJN02_20645, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.5 bits (467), Expect = 3.8e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MDGIWLPCLDLLHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPG 60
          MDGIWLPCLDLLHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPG
Sbjct: 1  MDGIWLPCLDLLHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPG 60

Query: 61 TNGPGCPQKVRHYTINHSTRRPSAH 86
          TNGPGCPQKVRHYTINHSTRRPSAH
Sbjct: 61 TNGPGCPQKVRHYTINHSTRRPSAH 85

[Close]

BLAST of Carg16580 vs. NCBI nr
Match: KAG6582361.1 (hypothetical protein SDJN03_22363, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.0 bits (349), Expect = 1.8e-29
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 6  LPCLDLLHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 65
          LP L +LHPNIAGRTLHENPSMVRRTE  LKLKLQSLQRVSVPPSGPSGCTFIPGTNGPG
Sbjct: 8  LPLL-VLHPNIAGRTLHENPSMVRRTE--LKLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 67

Query: 66 CPQKVRHYTINHST 80
          CPQKVRHYTINHST
Sbjct: 68 CPQKVRHYTINHST 78

[Close]

BLAST of Carg16580 vs. NCBI nr
Match: KGN56901.1 (hypothetical protein Csa_009866 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-25
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 12 LHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 71
          L PN+AGRTLHE P MVRR E  L LKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP K R
Sbjct: 10 LQPNLAGRTLHEKPPMVRRME--LNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPLKER 69

Query: 72 HYTINHSTRRPSAH 86
          HY  NHST+RPS H
Sbjct: 70 HYVANHSTQRPSTH 81

[Close]

BLAST of Carg16580 vs. NCBI nr
Match: KAA0049291.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-24
Identity = 59/74 (79.73%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 12 LHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 71
          L PN+AGRTLHE P MVRR E  L LKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP K R
Sbjct: 9  LQPNLAGRTLHEKPPMVRRME--LNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPLKER 68

Query: 72 HYTINHSTRRPSAH 86
          HY    STRRPS H
Sbjct: 69 HYVAGRSTRRPSTH 80

[Close]

BLAST of Carg16580 vs. NCBI nr
Match: TYK17267.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-24
Identity = 59/74 (79.73%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 12 LHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 71
          L PN+AGRTLHE P MVRR E  L LKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP K R
Sbjct: 18 LQPNLAGRTLHEKPPMVRRME--LNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPLKER 77

Query: 72 HYTINHSTRRPSAH 86
          HY    STRRPS H
Sbjct: 78 HYVAGRSTRRPSTH 89

[Close]

BLAST of Carg16580 vs. ExPASy TrEMBL
Match: A0A0A0LA00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.8e-26
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 12 LHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 71
          L PN+AGRTLHE P MVRR E  L LKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP K R
Sbjct: 10 LQPNLAGRTLHEKPPMVRRME--LNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPLKER 69

Query: 72 HYTINHSTRRPSAH 86
          HY  NHST+RPS H
Sbjct: 70 HYVANHSTQRPSTH 81

[Close]

BLAST of Carg16580 vs. ExPASy TrEMBL
Match: A0A5D3CZY7 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001200 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 59/74 (79.73%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 12 LHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 71
          L PN+AGRTLHE P MVRR E  L LKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP K R
Sbjct: 18 LQPNLAGRTLHEKPPMVRRME--LNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPLKER 77

Query: 72 HYTINHSTRRPSAH 86
          HY    STRRPS H
Sbjct: 78 HYVAGRSTRRPSTH 89

[Close]

BLAST of Carg16580 vs. ExPASy TrEMBL
Match: A0A5A7U6N3 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G005320 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 59/74 (79.73%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 12 LHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 71
          L PN+AGRTLHE P MVRR E  L LKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP K R
Sbjct: 9  LQPNLAGRTLHEKPPMVRRME--LNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPLKER 68

Query: 72 HYTINHSTRRPSAH 86
          HY    STRRPS H
Sbjct: 69 HYVAGRSTRRPSTH 80

[Close]

BLAST of Carg16580 vs. ExPASy TrEMBL
Match: A0A7N2LY56 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.6e-08
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 17 AGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVRHYTIN 76
          A R L++   ++R+     ++ LQSLQR  V PSGPSGCT+IPGTNGPGCP    HY  N
Sbjct: 27 ASRLLYKGGELLRK-----EIGLQSLQRGPVAPSGPSGCTYIPGTNGPGCPVNEMHYARN 81

[Close]

BLAST of Carg16580 vs. ExPASy TrEMBL
Match: W9QW23 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_017421 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.6e-08
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 17 AGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVRHYTIN 76
          A R L+++   + + E KL L  QSL R  VPPSGPSGCT+IPG+ GP CP   +HY  +
Sbjct: 24 ASRVLNDHKEGLVKEE-KLGLGFQSLPRGPVPPSGPSGCTYIPGSGGPNCPLGEKHYAGD 83

Query: 77 HSTRRP 83
          H+T  P
Sbjct: 84 HATVYP 88

The following BLAST results are available for this feature:

BLAST of Carg16580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018772.1	3.8e-43	100.00	hypothetical protein SDJN02_20645, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6582361.1	1.8e-29	93.24	hypothetical protein SDJN03_22363, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN56901.1	1.6e-25	81.08	hypothetical protein Csa_009866 [Cucumis sativus]	[more]
KAA0049291.1	2.3e-24	79.73	putative transmembrane protein [Cucumis melo var. makuwa]	[more]
TYK17267.1	2.3e-24	79.73	putative transmembrane protein [Cucumis melo var. makuwa]	[more]

BLAST of Carg16580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg16580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA00	7.8e-26	81.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1	[more]
A0A5D3CZY7	1.1e-24	79.73	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7U6N3	1.1e-24	79.73	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A7N2LY56	5.6e-08	53.33	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
W9QW23	9.6e-08	50.00	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_017421 PE=4 SV=1	[more]

BLAST of Carg16580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33592:SF5	TRANSMEMBRANE PROTEIN	coord: 13..82
None	No IPR available	PANTHER	PTHR33592	FAMILY NOT NAMED	coord: 13..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16580-RA	Carg16580-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane