Carg16505 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16505
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 13379554 .. 13380352 (+)
RNA-Seq ExpressionCarg16505
SyntenyCarg16505
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAAGGAGGAAGAAGAGGGAGTAGAAGTGCAAGTTTGGCTCACATGGCGACTTTCCATTTTGGACAATCTGTGTTCTTCCGGCTTCGTTTTACCCTCCGCTGCTGTGTTCTTATCTCTCAATCTTTCAGTTCGTGAAGGTAAAAATTATCGAGAGATAAAACCCTTGGATTTCAATTTCTTTCGCTTTCTATTATGCATTTGATTTCATTGGATTTTTGAACGCGTTGTTCTCTTTGACAAAACCTCCCCAAATCCCCTTTCATGTACTATTTTTTCTCCAATTCTATGTTCTTGTAGATCTCGCTGTTTCAATTTTTCTTTGTCTGCCTACCAACCGCTTGCGCGACCATTTTTTTGTTTGTTGTTCGTCTTTTTGATACAAACATTGCTTGGATGGTGGGGTTTTCCTGCTTTTTCCTGTGTTCTTTTCTTGATTCCTTTACATATTTTTATCCATTTCTTTACAGATTCGGCTGCTTTTGATTGTTTTTGTTCTTTTTTTTCTCCCCTCCAATTTATAATTCGTGCTTCACGCACCCACATGCATGTTTTTGGGTTTGTCTGATCTGGATTGGATCACAAGGGTCTTATGTTCTTTTTCTACTTGTAGAGAGAGAAAGAGAGGAGAGAGAGAGAGAGAGAGAGAGGGTGGGGTTTTGGGCCCTTTTCCTGCAATCTTGGTCTCTCGAGGGGTCATGGAAGAAGCACACAGGAGGAGGAGGAGAAGGTGAGATTTCTTGAATTGAAGGATATTGCCACTGGTCCATTTGATAAACCTTTCTTCTTTGTTTGA

mRNA sequence

ATGGGGAAAGGAGGAAGAAGAGGGAGTAGAAGTGCAAGTTTGGCTCACATGGCGACTTTCCATTTTGGACAATCTGTGTTCTTCCGGCTTCGTTTTACCCTCCGCTGCTGTAGAGAGAAAGAGAGGAGAGAGAGAGAGAGAGAGAGAGGGTGGGGTTTTGGGCCCTTTTCCTGCAATCTTGGTCTCTCGAGGGGTCATGGAAGAAGCACACAGGAGGAGGAGGAGAAGGTGAGATTTCTTGAATTGAAGGATATTGCCACTGGTCCATTTGATAAACCTTTCTTCTTTGTTTGA

Coding sequence (CDS)

ATGGGGAAAGGAGGAAGAAGAGGGAGTAGAAGTGCAAGTTTGGCTCACATGGCGACTTTCCATTTTGGACAATCTGTGTTCTTCCGGCTTCGTTTTACCCTCCGCTGCTGTAGAGAGAAAGAGAGGAGAGAGAGAGAGAGAGAGAGAGGGTGGGGTTTTGGGCCCTTTTCCTGCAATCTTGGTCTCTCGAGGGGTCATGGAAGAAGCACACAGGAGGAGGAGGAGAAGGTGAGATTTCTTGAATTGAAGGATATTGCCACTGGTCCATTTGATAAACCTTTCTTCTTTGTTTGA

Protein sequence

MGKGGRRGSRSASLAHMATFHFGQSVFFRLRFTLRCCREKERRERERERGWGFGPFSCNLGLSRGHGRSTQEEEEKVRFLELKDIATGPFDKPFFFV
Homology
[Close]
BLAST of Carg16505 vs. NCBI nr
Match: KAG7018847.1 (hypothetical protein SDJN02_20720, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.8 bits (517), Expect = 6.9e-49
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MGKGGRRGSRSASLAHMATFHFGQSVFFRLRFTLRCCREKERRERERERGWGFGPFSCNL 60
          MGKGGRRGSRSASLAHMATFHFGQSVFFRLRFTLRCCREKERRERERERGWGFGPFSCNL
Sbjct: 1  MGKGGRRGSRSASLAHMATFHFGQSVFFRLRFTLRCCREKERRERERERGWGFGPFSCNL 60

Query: 61 GLSRGHGRSTQEEEEKVRFLELKDIATGPFDKPFFFV 98
          GLSRGHGRSTQEEEEKVRFLELKDIATGPFDKPFFFV
Sbjct: 61 GLSRGHGRSTQEEEEKVRFLELKDIATGPFDKPFFFV 97

[Close]
BLAST of Carg16505 vs. NCBI nr
Match: KAG7028774.1 (hypothetical protein SDJN02_09955, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 45 RERERGWGFGPFSCNLGLSRGHGRSTQEEEEKVRFLELKDIATGPFD 92
          RER+R  G G FS NLGL  GHGRS Q EEEKVR+LELKDI  GP +
Sbjct: 53 RERKR-VGLGSFSPNLGLYWGHGRSKQ-EEEKVRYLELKDILIGPLE 97

The following BLAST results are available for this feature:
BLAST of Carg16505 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018847.16.9e-49100.00hypothetical protein SDJN02_20720, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7028774.11.4e-0468.09hypothetical protein SDJN02_09955, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg16505 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16505 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16505 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16505-RACarg16505-RAmRNA