Carg16439 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16439
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr12: 7433118 .. 7433645 (+)
RNA-Seq Expression	Carg16439
Synteny	Carg16439

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGAATCAAAACATATTGAAAACCAAATCTCAGCTGTTGATTGCAGTAGCGTTAATGGCGATGGCGACGAGACTCGTAAAAGAATCGCGACGGCCGAAATCAGGCGCGATGATGATGATGACGACGACGACGACGACGACGATGACGATGGAAAAATGGAGATCGGTAAAAAAGGCTTTGGAAAAGCGAAACAGGTGATGTTCTATCCATTTCGAAAGGCGAAGAAACAGATTCTTCGGTGTAGGATTAAGAGGACCTCTTCTTGTTCTTCTTCGATTTTTAGTATTACAAGAACAAATTCTTGGGATAAGAGTGTTTATGATGCGAGTGTAAATCAAGGCTGTGGTTTCTGTTTTGCGAAACATTCAATTTCAGATTCTAAGAATGGATCTCCGACTGATCCGAATCATCCGAAGTTCACTGATGAAATGTTGAAAGTTCTTATTGAAAAGAATGATTTCTATTCCAAAGAATCCAATCCTCATTTGGGTATATTCCTCGTTCTTCTTGTTCATATATCTTGA

mRNA sequence

ATGTTCGAATCAAAACATATTGAAAACCAAATCTCAGCTGTTGATTGCAGTAGCGTTAATGGCGATGGCGACGAGACTCGTAAAAGAATCGCGACGGCCGAAATCAGGCGCGATGATGATGATGACGACGACGACGACGACGACGATGACGATGGAAAAATGGAGATCGGTAAAAAAGGCTTTGGAAAAGCGAAACAGGTGATGTTCTATCCATTTCGAAAGGCGAAGAAACAGATTCTTCGGTGTAGGATTAAGAGGACCTCTTCTTGTTCTTCTTCGATTTTTAGTATTACAAGAACAAATTCTTGGGATAAGAGTGTTTATGATGCGAGTGTAAATCAAGGCTGTGGTTTCTGTTTTGCGAAACATTCAATTTCAGATTCTAAGAATGGATCTCCGACTGATCCGAATCATCCGAAGTTCACTGATGAAATGTTGAAAGTTCTTATTGAAAAGAATGATTTCTATTCCAAAGAATCCAATCCTCATTTGGGTATATTCCTCGTTCTTCTTGTTCATATATCTTGA

Coding sequence (CDS)

ATGTTCGAATCAAAACATATTGAAAACCAAATCTCAGCTGTTGATTGCAGTAGCGTTAATGGCGATGGCGACGAGACTCGTAAAAGAATCGCGACGGCCGAAATCAGGCGCGATGATGATGATGACGACGACGACGACGACGACGATGACGATGGAAAAATGGAGATCGGTAAAAAAGGCTTTGGAAAAGCGAAACAGGTGATGTTCTATCCATTTCGAAAGGCGAAGAAACAGATTCTTCGGTGTAGGATTAAGAGGACCTCTTCTTGTTCTTCTTCGATTTTTAGTATTACAAGAACAAATTCTTGGGATAAGAGTGTTTATGATGCGAGTGTAAATCAAGGCTGTGGTTTCTGTTTTGCGAAACATTCAATTTCAGATTCTAAGAATGGATCTCCGACTGATCCGAATCATCCGAAGTTCACTGATGAAATGTTGAAAGTTCTTATTGAAAAGAATGATTTCTATTCCAAAGAATCCAATCCTCATTTGGGTATATTCCTCGTTCTTCTTGTTCATATATCTTGA

Protein sequence

MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIRRDDDDDDDDDDDDDDGKMEIGKKGFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYDASVNQGCGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHLGIFLVLLVHIS

Homology

[Close]

BLAST of Carg16439 vs. NCBI nr
Match: KAG7020835.1 (hypothetical protein SDJN02_17523, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 346.3 bits (887), Expect = 1.6e-91
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIRRDDDDDDDDDDDDDDGKMEIGKKG 60
           MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIRRDDDDDDDDDDDDDDGKMEIGKKG
Sbjct: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIRRDDDDDDDDDDDDDDGKMEIGKKG 60

Query: 61  FGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYDASVNQGCGFCF 120
           FGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYDASVNQGCGFCF
Sbjct: 61  FGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYDASVNQGCGFCF 120

Query: 121 AKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHLGIFLVLLVHIS 176
           AKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHLGIFLVLLVHIS
Sbjct: 121 AKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHLGIFLVLLVHIS 175

[Close]

BLAST of Carg16439 vs. NCBI nr
Match: XP_022937511.1 (uncharacterized protein LOC111443901 [Cucurbita moschata] >XP_022937513.1 uncharacterized protein LOC111443901 [Cucurbita moschata])

HSP 1 Score: 317.8 bits (813), Expect = 6.0e-83
Identity = 162/165 (98.18%), Postives = 162/165 (98.18%), Query Frame = 0


Query: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIRR-DDDDDDDDDDDDDDGKMEIGKK 60
           MFESKHIENQISAVDCSSVNGDGDE RKRIATAEIRR DDDDDDDDDDDDDDGK EIGKK
Sbjct: 1   MFESKHIENQISAVDCSSVNGDGDENRKRIATAEIRRDDDDDDDDDDDDDDDGKTEIGKK 60

Query: 61  GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYDASVNQGCGFC 120
           GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYDASVNQGCGFC
Sbjct: 61  GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYDASVNQGCGFC 120

Query: 121 FAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL 165
           FAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL
Sbjct: 121 FAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL 165

[Close]

BLAST of Carg16439 vs. NCBI nr
Match: XP_022969627.1 (uncharacterized protein LOC111468598 [Cucurbita maxima])

HSP 1 Score: 314.3 bits (804), Expect = 6.6e-82
Identity = 163/169 (96.45%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIRR-DDDDDDDDDDDDDDGKMEIGKK 60
           MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIRR DDDDDDDDDDDDDDGKMEIGKK
Sbjct: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIRRDDDDDDDDDDDDDDDGKMEIGKK 60

Query: 61  GFGKAKQVMFYPFRKAKKQILRCRIKRT----SSCSSSIFSITRTNSWDKSVYDASVNQG 120
           GFGKAKQVMFYPFRKAKKQILRCRIKRT    SSCSSSIFSITRTNSWDKSVYDASVNQG
Sbjct: 61  GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSCSSSIFSITRTNSWDKSVYDASVNQG 120

Query: 121 CGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL 165
           CGFCFAKHSISDSKNGSPTDPNHPKFT+EMLKVLIEKNDFYSKESNPHL
Sbjct: 121 CGFCFAKHSISDSKNGSPTDPNHPKFTNEMLKVLIEKNDFYSKESNPHL 169

[Close]

BLAST of Carg16439 vs. NCBI nr
Match: XP_023537897.1 (uncharacterized protein LOC111798795 [Cucurbita pepo subsp. pepo] >XP_023537898.1 uncharacterized protein LOC111798795 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 314.3 bits (804), Expect = 6.6e-82
Identity = 163/169 (96.45%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIRRDDDDDDDDDDDDD-DGKMEIGKK 60
           MFESKHIENQISAVDCSSVNGDGDE RKRIATAEIRRDDDDDDDDDDDDD DGKMEIGKK
Sbjct: 1   MFESKHIENQISAVDCSSVNGDGDEARKRIATAEIRRDDDDDDDDDDDDDNDGKMEIGKK 60

Query: 61  GFGKAKQVMFYPFRKAKKQILRCRIKRT----SSCSSSIFSITRTNSWDKSVYDASVNQG 120
           GFGKAKQVMFYPFRKAKKQILRCRIKRT    SSCSSSIFSITRTNSWDKSVYDASVNQG
Sbjct: 61  GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSCSSSIFSITRTNSWDKSVYDASVNQG 120

Query: 121 CGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL 165
           CGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL
Sbjct: 121 CGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL 169

[Close]

BLAST of Carg16439 vs. NCBI nr
Match: XP_011648888.1 (uncharacterized protein LOC101216013 [Cucumis sativus] >XP_031736788.1 uncharacterized protein LOC101216013 [Cucumis sativus] >KGN61038.1 hypothetical protein Csa_021211 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 7.6e-54
Identity = 122/173 (70.52%), Postives = 131/173 (75.72%), Query Frame = 0


Query: 1   MFESKHIENQISAVDCSSVNGDG----DETRKRIATAEIRRDDDDDDDDDDDDDDGKMEI 60
           M ES+H EN IS V CS VN DG    DETR  +A  +IR        DD+ DDD KME+
Sbjct: 1   MLESRHAENNISDVGCSGVNDDGDDEDDETRNTMAKTQIR--------DDEFDDDRKMEM 60

Query: 61  GKKGFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSIT---RTNSWDKSVYDASVN 120
           GKKGFGKAKQVMFYPFRKAKKQILR RIKR SSCSSS  S+T   RTNS DK  +D SVN
Sbjct: 61  GKKGFGKAKQVMFYPFRKAKKQILRRRIKRDSSCSSSSSSVTCSRRTNSLDKRGFDGSVN 120

Query: 121 QGCGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHLGI 167
           QGCGFC  K SISDSKNGSPTDPNH KFT+EMLKVLIEKNDFYSKESNPH  +
Sbjct: 121 QGCGFCLTKLSISDSKNGSPTDPNHRKFTNEMLKVLIEKNDFYSKESNPHFDV 165

[Close]

BLAST of Carg16439 vs. ExPASy TrEMBL
Match: A0A6J1FAJ4 (uncharacterized protein LOC111443901 OS=Cucurbita moschata OX=3662 GN=LOC111443901 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 2.9e-83
Identity = 162/165 (98.18%), Postives = 162/165 (98.18%), Query Frame = 0


Query: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIRR-DDDDDDDDDDDDDDGKMEIGKK 60
           MFESKHIENQISAVDCSSVNGDGDE RKRIATAEIRR DDDDDDDDDDDDDDGK EIGKK
Sbjct: 1   MFESKHIENQISAVDCSSVNGDGDENRKRIATAEIRRDDDDDDDDDDDDDDDGKTEIGKK 60

Query: 61  GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYDASVNQGCGFC 120
           GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYDASVNQGCGFC
Sbjct: 61  GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYDASVNQGCGFC 120

Query: 121 FAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL 165
           FAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL
Sbjct: 121 FAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL 165

[Close]

BLAST of Carg16439 vs. ExPASy TrEMBL
Match: A0A6J1HWU1 (uncharacterized protein LOC111468598 OS=Cucurbita maxima OX=3661 GN=LOC111468598 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.2e-82
Identity = 163/169 (96.45%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIRR-DDDDDDDDDDDDDDGKMEIGKK 60
           MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIRR DDDDDDDDDDDDDDGKMEIGKK
Sbjct: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIRRDDDDDDDDDDDDDDDGKMEIGKK 60

Query: 61  GFGKAKQVMFYPFRKAKKQILRCRIKRT----SSCSSSIFSITRTNSWDKSVYDASVNQG 120
           GFGKAKQVMFYPFRKAKKQILRCRIKRT    SSCSSSIFSITRTNSWDKSVYDASVNQG
Sbjct: 61  GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSCSSSIFSITRTNSWDKSVYDASVNQG 120

Query: 121 CGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL 165
           CGFCFAKHSISDSKNGSPTDPNHPKFT+EMLKVLIEKNDFYSKESNPHL
Sbjct: 121 CGFCFAKHSISDSKNGSPTDPNHPKFTNEMLKVLIEKNDFYSKESNPHL 169

[Close]

BLAST of Carg16439 vs. ExPASy TrEMBL
Match: A0A0A0LH19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035380 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.7e-54
Identity = 122/173 (70.52%), Postives = 131/173 (75.72%), Query Frame = 0


Query: 1   MFESKHIENQISAVDCSSVNGDG----DETRKRIATAEIRRDDDDDDDDDDDDDDGKMEI 60
           M ES+H EN IS V CS VN DG    DETR  +A  +IR        DD+ DDD KME+
Sbjct: 1   MLESRHAENNISDVGCSGVNDDGDDEDDETRNTMAKTQIR--------DDEFDDDRKMEM 60

Query: 61  GKKGFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSIT---RTNSWDKSVYDASVN 120
           GKKGFGKAKQVMFYPFRKAKKQILR RIKR SSCSSS  S+T   RTNS DK  +D SVN
Sbjct: 61  GKKGFGKAKQVMFYPFRKAKKQILRRRIKRDSSCSSSSSSVTCSRRTNSLDKRGFDGSVN 120

Query: 121 QGCGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHLGI 167
           QGCGFC  K SISDSKNGSPTDPNH KFT+EMLKVLIEKNDFYSKESNPH  +
Sbjct: 121 QGCGFCLTKLSISDSKNGSPTDPNHRKFTNEMLKVLIEKNDFYSKESNPHFDV 165

[Close]

BLAST of Carg16439 vs. ExPASy TrEMBL
Match: A0A1S3BWA1 (uncharacterized protein LOC103493824 OS=Cucumis melo OX=3656 GN=LOC103493824 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 9.0e-53
Identity = 121/179 (67.60%), Postives = 130/179 (72.63%), Query Frame = 0


Query: 1   MFESKHIENQISAVDCSSVNGDG----DETRKRIATAEIRRDDDDDDDDDDDDDDGKMEI 60
           M ES+H EN IS V CS VN DG    DETR  +A  +IR        DD+ DDD KME+
Sbjct: 1   MLESRHAENNISDVGCSGVNDDGDDEDDETRNTMAKTQIR--------DDEFDDDRKMEM 60

Query: 61  GKKGFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSS---------SIFSITRTNSWDKSV 120
           GKKGFGKAKQVMFYPFRKAKKQILR RIKR SSCSS         S+    RTNS DK  
Sbjct: 61  GKKGFGKAKQVMFYPFRKAKKQILRRRIKRGSSCSSSSPCSSSSPSVICSRRTNSLDKRG 120

Query: 121 YDASVNQGCGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHLGI 167
           +D SVNQGCGFC  K SISDSKNGSPTDPNH KFT+EMLKVLIEKNDFYSKESNPHL +
Sbjct: 121 FDGSVNQGCGFCLTKLSISDSKNGSPTDPNHRKFTNEMLKVLIEKNDFYSKESNPHLDV 171

[Close]

BLAST of Carg16439 vs. ExPASy TrEMBL
Match: A0A6J1KI22 (uncharacterized protein LOC111494022 OS=Cucurbita maxima OX=3661 GN=LOC111494022 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.9e-43
Identity = 109/176 (61.93%), Postives = 122/176 (69.32%), Query Frame = 0


Query: 1   MFESKHIENQISAVDCSSVNGDGD----ETRKRIATAEIRRDDDDDDDDDDDDDDGKMEI 60
           M ES + EN +S V CS VN DGD    E RK +A  +I   D                +
Sbjct: 1   MLESGNAENHLSDVGCSGVNDDGDDEDNERRKSMAKGQIIAPD----------------L 60

Query: 61  GK-KGFGKAKQVMFYPFRKAKKQILRCRIKR-TSSC--SSSIFSITRTNSWDKSVYDASV 120
           GK KGFGKAK+VM YPFRKAKKQILR RIKR +SSC  SSS+    RT+S DK V+D SV
Sbjct: 61  GKQKGFGKAKRVMLYPFRKAKKQILRRRIKRDSSSCSSSSSVDCTRRTSSSDKRVFDGSV 120

Query: 121 NQGCGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHLGIFL 169
           NQGCGFCF K SISDSKNG PTDPNH KFT+EMLKVLIEKNDFYSKESNPHL + +
Sbjct: 121 NQGCGFCFMKLSISDSKNGPPTDPNHRKFTNEMLKVLIEKNDFYSKESNPHLDVHM 160

The following BLAST results are available for this feature:

BLAST of Carg16439 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020835.1	1.6e-91	100.00	hypothetical protein SDJN02_17523, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022937511.1	6.0e-83	98.18	uncharacterized protein LOC111443901 [Cucurbita moschata] >XP_022937513.1 unchar...	[more]
XP_022969627.1	6.6e-82	96.45	uncharacterized protein LOC111468598 [Cucurbita maxima]	[more]
XP_023537897.1	6.6e-82	96.45	uncharacterized protein LOC111798795 [Cucurbita pepo subsp. pepo] >XP_023537898....	[more]
XP_011648888.1	7.6e-54	70.52	uncharacterized protein LOC101216013 [Cucumis sativus] >XP_031736788.1 uncharact...	[more]

BLAST of Carg16439 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg16439 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FAJ4	2.9e-83	98.18	uncharacterized protein LOC111443901 OS=Cucurbita moschata OX=3662 GN=LOC1114439...	[more]
A0A6J1HWU1	3.2e-82	96.45	uncharacterized protein LOC111468598 OS=Cucurbita maxima OX=3661 GN=LOC111468598...	[more]
A0A0A0LH19	3.7e-54	70.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035380 PE=4 SV=1	[more]
A0A1S3BWA1	9.0e-53	67.60	uncharacterized protein LOC103493824 OS=Cucumis melo OX=3656 GN=LOC103493824 PE=...	[more]
A0A6J1KI22	2.9e-43	61.93	uncharacterized protein LOC111494022 OS=Cucurbita maxima OX=3661 GN=LOC111494022...	[more]

BLAST of Carg16439 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..51
None	No IPR available	PANTHER	PTHR35123:SF2	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE-LIKE PROTEIN	coord: 36..165
None	No IPR available	PANTHER	PTHR35123	OS07G0633900 PROTEIN-RELATED	coord: 36..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16439-RA	Carg16439-RA	mRNA