Carg16290 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16290
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionconserved peptide upstream open reading frame 25
LocationCarg_Chr06: 3026574 .. 3027881 (+)
RNA-Seq ExpressionCarg16290
SyntenyCarg16290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAAGGGCACTGGATAGCTGGCAAGTGGCACCAACCAGCTGATCATTGGGTCGAAATCCGAGAGCAGATTAGAAACCGGTGGGTCTGGCCGTAGAGAATACGAACTCCGGATGTATAAAAGGGTTTCGGTGTGGGTCATTATGGAAAATTAGGGATCATTACCTTGGTTGGCACGCAGCAAAGATCTCGTGTTTTTTTCTTCTTTTTGTGTATTTGGGAATCCGTCTGGTTTTCTTTGTGGCTTTGAGAAGATTTGCGGGAAGAAGAAGAGCGTTTAGGGAAGCTCTGGATCCCAATTCCTCCCGTTCTTGGAGGCGGAGGTTATGCTTCTTCATTTTTCGGTACCGATTCATTCCGATTTCTCTTTGATTTTGTGAATATATCTATCTAGGTCAAATTTCCCCCCCCTATATGTTTGGTGTATGGTGTTTTTCGATTGACGGATTGATTGATCGGATTTAGTGTGGGATTTCTAGGTTTCTTCGTTGTCACTCGTTTTAATTTGGTTATCTGTTTATGGTTGATTCGACGACGGAATCTTGTGCGGTTTTTATGTTTGGTCATTGATCGAAGAAATTCTAATTTGTTAGCAGTTTGTGGCGGGGTGCTGTTTGTTTCATTTGCCTTTCGTGAATTGGAAGTTTGTCTGAGTGGTCGGTTGGTGAATTAGGGTTTCGTCTTGATTCAATGCCGGAAATCTTGTGAGATTCTTTTTGCTCACTAATCGCGAAGAATCTCGTTTGTTTGGACTTTTAGCGCGTAACTGCTGCTTCGCTTGCTTATTTTTTGTGAGCAGGATTTTTTGTCGACTGGTCGGTTGGTGAATTGTTGTTTTGTATTGATGAACGCGAGATGCCTATTGTCTTACATTGGTTCTTTTTTGGGATTTTCCTTGAGCCTTTTGCGCTTACGAAATTTTTCTTCTCTAATAATTTTTGCCTCTTGATACGATTGTTGCAATAATATGTATGTTCTGATCAAATTTGGGCTGTTTATGGTCTTTAGCATATGATAAATTGCAGCCCGGTGGTTTATAACATGCCACATCTTGATAAAATCTACTGACCTGTACTCTCGTTATCATTCATGAATATTTATTCTAACTCTTTGATGTTGTTGTAAAGTATCAGATATTTGAGGGCTTGGATATAAAGGGCTTTTTATATTTTCTCAAGATATGGAGCTTGCTTCTTTTTGGACAAATTCCTTCCGGCATCAAGTTTGTTCTTTCCAGGAAGTGCTTGACTGGCGTTTCCTTGTTCTTGGAGATTTTCTTTTGGTTTCCTTTGTCAATTGCACTTAG

mRNA sequence

ATGGCGAAAGGGCACTGGATAGCTGGCAAGTGGCACCAACCAGCTGATCATTGGGTCGAAATCCGAGAGCAGATTAGAAACCGATTTGCGGGAAGAAGAAGAGCGTTTAGGGAAGCTCTGGATCCCAATTCCTCCCATATGGAGCTTGCTTCTTTTTGGACAAATTCCTTCCGGCATCAAGTTTGTTCTTTCCAGGAAGTGCTTGACTGGCGTTTCCTTGTTCTTGGAGATTTTCTTTTGGTTTCCTTTGTCAATTGCACTTAG

Coding sequence (CDS)

ATGGCGAAAGGGCACTGGATAGCTGGCAAGTGGCACCAACCAGCTGATCATTGGGTCGAAATCCGAGAGCAGATTAGAAACCGATTTGCGGGAAGAAGAAGAGCGTTTAGGGAAGCTCTGGATCCCAATTCCTCCCATATGGAGCTTGCTTCTTTTTGGACAAATTCCTTCCGGCATCAAGTTTGTTCTTTCCAGGAAGTGCTTGACTGGCGTTTCCTTGTTCTTGGAGATTTTCTTTTGGTTTCCTTTGTCAATTGCACTTAG

Protein sequence

MAKGHWIAGKWHQPADHWVEIREQIRNRFAGRRRAFREALDPNSSHMELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT
Homology
BLAST of Carg16290 vs. NCBI nr
Match: KAG7028229.1 (hypothetical protein SDJN02_09410, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.7 bits (483), Expect = 5.5e-45
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0

Query: 1  MAKGHWIAGKWHQPADHWVEIREQIRNRFAGRRRAFREALDPNSSHMELASFWTNSFRHQ 60
          MAKGHWIAGKWHQPADHWVEIREQIRNRFAGRRRAFREALDPNSSHMELASFWTNSFRHQ
Sbjct: 1  MAKGHWIAGKWHQPADHWVEIREQIRNRFAGRRRAFREALDPNSSHMELASFWTNSFRHQ 60

Query: 61 VCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          VCSFQEVLDWRFLVLGDFLLVSFVNCT
Sbjct: 61 VCSFQEVLDWRFLVLGDFLLVSFVNCT 87

BLAST of Carg16290 vs. NCBI nr
Match: XP_008448598.1 (PREDICTED: uncharacterized protein LOC103490726 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 7.2e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME AS WTNSF+HQVCSFQEVLDWRFLVLGDFLLVSFVNCT
Sbjct: 1  MEPASIWTNSFQHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 41

BLAST of Carg16290 vs. NCBI nr
Match: XP_011028056.1 (PREDICTED: uncharacterized protein LOC105128195 [Populus euphratica])

HSP 1 Score: 75.1 bits (183), Expect = 3.3e-10
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME A FW+N F+H+V SFQEVLDWRFL+LGDFLLVSFVNCT
Sbjct: 1  MEKACFWSNCFQHRVFSFQEVLDWRFLILGDFLLVSFVNCT 41

BLAST of Carg16290 vs. NCBI nr
Match: KAF7829149.1 (uncharacterized protein G2W53_020313 [Senna tora])

HSP 1 Score: 68.2 bits (165), Expect = 4.1e-08
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME A FW+N +++++ SFQEVLDWRF VLGDFLLVSFVNCT
Sbjct: 1  MEGAFFWSNCYQYRLFSFQEVLDWRFFVLGDFLLVSFVNCT 41

BLAST of Carg16290 vs. NCBI nr
Match: KAG2676796.1 (hypothetical protein I3760_12G069100 [Carya illinoinensis] >KAG6684586.1 hypothetical protein I3842_12G069900 [Carya illinoinensis] >KAG7952679.1 hypothetical protein I3843_12G071000 [Carya illinoinensis])

HSP 1 Score: 67.4 bits (163), Expect = 7.0e-08
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME   FW+  ++ +V SFQEVLDWRFLVLGDFLLVSFVNCT
Sbjct: 1  MEQVRFWSKCYKFRVFSFQEVLDWRFLVLGDFLLVSFVNCT 41

BLAST of Carg16290 vs. ExPASy TrEMBL
Match: A0A1S3BKY3 (uncharacterized protein LOC103490726 OS=Cucumis melo OX=3656 GN=LOC103490726 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.5e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME AS WTNSF+HQVCSFQEVLDWRFLVLGDFLLVSFVNCT
Sbjct: 1  MEPASIWTNSFQHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 41

BLAST of Carg16290 vs. ExPASy TrEMBL
Match: A0A0D2PZL6 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G220600 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.7e-07
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 38 EALDPNSSHMELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          E     +++ME   FW+N +  +V  FQEVLDWRFL  GDFLLVSFVNCT
Sbjct: 10 ERAKERANNMEQVCFWSNCYLFRVFFFQEVLDWRFLARGDFLLVSFVNCT 59

BLAST of Carg16290 vs. ExPASy TrEMBL
Match: A0A1U8MUE2 (uncharacterized protein LOC107938578 OS=Gossypium hirsutum OX=3635 GN=LOC107941384 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.4e-07
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME   FW+N +  ++ SFQEVLDWRF++ GDFLLVSFVNCT
Sbjct: 1  MEQVCFWSNCYLFRMFSFQEVLDWRFIIHGDFLLVSFVNCT 41

BLAST of Carg16290 vs. ExPASy TrEMBL
Match: A0A6P4LMT5 (uncharacterized protein LOC108453405 OS=Gossypium arboreum OX=29729 GN=LOC108453405 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.4e-07
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME   FW+N +  ++ SFQEVLDWRF++ GDFLLVSFVNCT
Sbjct: 1  MEQVCFWSNCYLFRMFSFQEVLDWRFIIHGDFLLVSFVNCT 41

BLAST of Carg16290 vs. ExPASy TrEMBL
Match: A0A7J9BIK1 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_019777 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.4e-07
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME   FW+N +  ++ SFQEVLDWRF++ GDFLLVSFVNCT
Sbjct: 1  MEQVCFWSNCYLFRMFSFQEVLDWRFIIHGDFLLVSFVNCT 41

BLAST of Carg16290 vs. TAIR 10
Match: AT4G19112.1 (conserved peptide upstream open reading frame 25 )

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME    W + + +++ SFQE LDWRFLV  DFL+ SFVNCT
Sbjct: 1  MEQVFVWPSCYHYRLFSFQEALDWRFLVRSDFLVGSFVNCT 41

BLAST of Carg16290 vs. TAIR 10
Match: AT5G45428.1 (conserved peptide upstream open reading frame 24 )

HSP 1 Score: 47.4 bits (111), Expect = 6.9e-06
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME     +  ++++V S QE LDWRFLV  DFL+ SFVNCT
Sbjct: 1  MEQDYICSGCYQYRVFSLQEALDWRFLVHSDFLIGSFVNCT 41

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7028229.15.5e-45100.00hypothetical protein SDJN02_09410, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_008448598.17.2e-1392.68PREDICTED: uncharacterized protein LOC103490726 [Cucumis melo][more]
XP_011028056.13.3e-1080.49PREDICTED: uncharacterized protein LOC105128195 [Populus euphratica][more]
KAF7829149.14.1e-0873.17uncharacterized protein G2W53_020313 [Senna tora][more]
KAG2676796.17.0e-0873.17hypothetical protein I3760_12G069100 [Carya illinoinensis] >KAG6684586.1 hypothe... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BKY33.5e-1392.68uncharacterized protein LOC103490726 OS=Cucumis melo OX=3656 GN=LOC103490726 PE=... [more]
A0A0D2PZL63.7e-0758.00Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G220600 PE=4 ... [more]
A0A1U8MUE26.4e-0765.85uncharacterized protein LOC107938578 OS=Gossypium hirsutum OX=3635 GN=LOC1079413... [more]
A0A6P4LMT56.4e-0765.85uncharacterized protein LOC108453405 OS=Gossypium arboreum OX=29729 GN=LOC108453... [more]
A0A7J9BIK16.4e-0765.85Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_019777 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT4G19112.11.3e-0756.10conserved peptide upstream open reading frame 25 [more]
AT5G45428.16.9e-0653.66conserved peptide upstream open reading frame 24 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16290-RACarg16290-RAmRNA