Carg16285 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCACAGAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGTCCGCGATAAAACTCACTGCGTTCCTCCGCCTCTGCGTCGCTCGTCGACAAAATTCACGACGGCTGCGATCATTCGGTTCCGACGATCGGACGGCAGGGCTACGGAGTTTCCTAGAAGATGAGAGAATAGTTGAGAATCGTTCCGTCAGAAAGCTTGAGCGTGCTTCGAGTGCAAGCTATGTAAATTTTGAAGACGATGTCGATAAGCGATCTCAGATTTTTATCGATAAATTTCTCCGTCAATTGAGGTTAGAACGACAAATTTCTTTGCAATTAAGATACTGTAGAGTCAATAGCTCTGAAACGGAATCTGAAGAGAAATCGCCGCCGTATCCGTCGATTCGATGA ATGGCACAGAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGTCCGCGATAAAACTCACTGCGTTCCTCCGCCTCTGCGTCGCTCGTCGACAAAATTCACGACGGCTGCGATCATTCGGTTCCGACGATCGGACGGCAGGGCTACGGAGTTTCCTAGAAGATGAGAGAATAGTTGAGAATCGTTCCGTCAGAAAGCTTGAGCGTGCTTCGAGTGCAAGCTATGTAAATTTTGAAGACGATGTCGATAAGCGATCTCAGATTTTTATCGATAAATTTCTCCGTCAATTGAGGTTAGAACGACAAATTTCTTTGCAATTAAGATACTGTAGAGTCAATAGCTCTGAAACGGAATCTGAAGAGAAATCGCCGCCGTATCCGTCGATTCGATGA ATGGCACAGAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGTCCGCGATAAAACTCACTGCGTTCCTCCGCCTCTGCGTCGCTCGTCGACAAAATTCACGACGGCTGCGATCATTCGGTTCCGACGATCGGACGGCAGGGCTACGGAGTTTCCTAGAAGATGAGAGAATAGTTGAGAATCGTTCCGTCAGAAAGCTTGAGCGTGCTTCGAGTGCAAGCTATGTAAATTTTGAAGACGATGTCGATAAGCGATCTCAGATTTTTATCGATAAATTTCTCCGTCAATTGAGGTTAGAACGACAAATTTCTTTGCAATTAAGATACTGTAGAGTCAATAGCTCTGAAACGGAATCTGAAGAGAAATCGCCGCCGTATCCGTCGATTCGATGA MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTAGLRSFLEDERIVENRSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESEEKSPPYPSIR Homology
BLAST of Carg16285 vs. NCBI nr
Match: KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 241.5 bits (615), Expect = 4.0e-60 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0
BLAST of Carg16285 vs. NCBI nr
Match: XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia]) HSP 1 Score: 162.5 bits (410), Expect = 2.4e-36 Identity = 93/130 (71.54%), Postives = 104/130 (80.00%), Query Frame = 0
BLAST of Carg16285 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa]) HSP 1 Score: 144.4 bits (363), Expect = 6.6e-31 Identity = 81/125 (64.80%), Postives = 98/125 (78.40%), Query Frame = 0
BLAST of Carg16285 vs. NCBI nr
Match: KAG7015798.1 (hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 138.7 bits (348), Expect = 3.6e-29 Identity = 78/127 (61.42%), Postives = 95/127 (74.80%), Query Frame = 0
BLAST of Carg16285 vs. NCBI nr
Match: KAG6577759.1 (hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 136.3 bits (342), Expect = 1.8e-28 Identity = 77/127 (60.63%), Postives = 94/127 (74.02%), Query Frame = 0
BLAST of Carg16285 vs. ExPASy TrEMBL
Match: A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 1.1e-36 Identity = 93/130 (71.54%), Postives = 104/130 (80.00%), Query Frame = 0
BLAST of Carg16285 vs. ExPASy TrEMBL
Match: A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 3.2e-31 Identity = 81/125 (64.80%), Postives = 98/125 (78.40%), Query Frame = 0
BLAST of Carg16285 vs. ExPASy TrEMBL
Match: A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 1.1e-28 Identity = 79/125 (63.20%), Postives = 98/125 (78.40%), Query Frame = 0
BLAST of Carg16285 vs. ExPASy TrEMBL
Match: A0A1R3J730 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 4.4e-12 Identity = 56/125 (44.80%), Postives = 72/125 (57.60%), Query Frame = 0
BLAST of Carg16285 vs. ExPASy TrEMBL
Match: A0A1R3IU67 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09786 PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 9.7e-12 Identity = 55/125 (44.00%), Postives = 72/125 (57.60%), Query Frame = 0
BLAST of Carg16285 vs. TAIR 10
Match: AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 46.2 bits (108), Expect = 2.3e-05 Identity = 27/72 (37.50%), Postives = 44/72 (61.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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