Carg16195 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16195
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transmembrane protein
Location	Carg_Chr20: 3796207 .. 3796590 (+)
RNA-Seq Expression	Carg16195
Synteny	Carg16195

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTGGTTAGAACCAAAGAGAAGGGGTCCAGAGTGGAAACAGGAATGGACAGGCCAAACCCTAGGCGGCTCTGTTTCTTCTCCACCACCTCAATTGCTCACCATTTTTGGCATTGTCATTGTCTTGCTTTGGTTTTCTCAGTCCACCACAGGCTACGACACTCAAATGCACAGGTCAGCTTCCAATTTCCAGCTGCTTCTTTTCTTGTTGCCCATCTTGGTGATTTTCTTCATGTCTTCATATTCCATGTGTGGGCTGATCAACCTCCGATCTTGGCGATCGGCAACCGGGTCGCCTCGACGAGGTGCCTCACCATTGACCATTACCATTTTAGTTTCTCTCATTCTAGTTTTGCTTTACTTCCGGCCCTCGTTCCATTGA

mRNA sequence

ATGGAGTGGTTAGAACCAAAGAGAAGGGGTCCAGAGTGGAAACAGGAATGGACAGGCCAAACCCTAGGCGGCTCTGTTTCTTCTCCACCACCTCAATTGCTCACCATTTTTGGCATTGTCATTGTCTTGCTTTGGTTTTCTCAGTCCACCACAGGCTACGACACTCAAATGCACAGGTCAGCTTCCAATTTCCAGCTGCTTCTTTTCTTGTTGCCCATCTTGGTGATTTTCTTCATGTCTTCATATTCCATGTGTGGGCTGATCAACCTCCGATCTTGGCGATCGGCAACCGGGTCGCCTCGACGAGGTGCCTCACCATTGACCATTACCATTTTAGTTTCTCTCATTCTAGTTTTGCTTTACTTCCGGCCCTCGTTCCATTGA

Coding sequence (CDS)

ATGGAGTGGTTAGAACCAAAGAGAAGGGGTCCAGAGTGGAAACAGGAATGGACAGGCCAAACCCTAGGCGGCTCTGTTTCTTCTCCACCACCTCAATTGCTCACCATTTTTGGCATTGTCATTGTCTTGCTTTGGTTTTCTCAGTCCACCACAGGCTACGACACTCAAATGCACAGGTCAGCTTCCAATTTCCAGCTGCTTCTTTTCTTGTTGCCCATCTTGGTGATTTTCTTCATGTCTTCATATTCCATGTGTGGGCTGATCAACCTCCGATCTTGGCGATCGGCAACCGGGTCGCCTCGACGAGGTGCCTCACCATTGACCATTACCATTTTAGTTTCTCTCATTCTAGTTTTGCTTTACTTCCGGCCCTCGTTCCATTGA

Protein sequence

MEWLEPKRRGPEWKQEWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRSASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTITILVSLILVLLYFRPSFH

Homology

[Close]

BLAST of Carg16195 vs. NCBI nr
Match: KAG7010871.1 (hypothetical protein SDJN02_27669, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 256.9 bits (655), Expect = 9.0e-65
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQEWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRS 60
           MEWLEPKRRGPEWKQEWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRS
Sbjct: 1   MEWLEPKRRGPEWKQEWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRS 60

Query: 61  ASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTITILVSLILVLL 120
           ASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTITILVSLILVLL
Sbjct: 61  ASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTITILVSLILVLL 120

Query: 121 YFRPSFH 128
           YFRPSFH
Sbjct: 121 YFRPSFH 127

[Close]

BLAST of Carg16195 vs. NCBI nr
Match: KGN61894.1 (hypothetical protein Csa_005908 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 7.2e-30
Identity = 84/129 (65.12%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQ--EWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMH 60
           M+   PKRRGPEWK+    TGQTL  SVS PP QLL IFGIVIVLLWFSQ   G++ Q++
Sbjct: 1   MDCFYPKRRGPEWKRGLTGTGQTL-SSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLN 60

Query: 61  RSASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTITILVSLILV 120
           RS   FQL LFLLPI VIFFM SYS   LIN    RS TG  +RGASP TI ILV LILV
Sbjct: 61  RS---FQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILV 120

Query: 121 LLYFRPSFH 128
           LLY++ SFH
Sbjct: 121 LLYYQSSFH 125

[Close]

BLAST of Carg16195 vs. NCBI nr
Match: KAF3434655.1 (hypothetical protein FNV43_RR21740 [Rhamnella rubrinervis])

HSP 1 Score: 132.1 bits (331), Expect = 3.4e-27
Identity = 74/127 (58.27%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQEWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRS 60
           MEW  PKRRGPEWKQ WTGQTL  S+S+PP  LLTIFGIVIVLLWFSQ  TGY  Q+ ++
Sbjct: 1   MEWFYPKRRGPEWKQGWTGQTL-TSISAPPLHLLTIFGIVIVLLWFSQ-YTGYKAQLQQT 60

Query: 61  ASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTITILVSLILVLL 120
             NFQL L +LPIL+IFFM+ YS  G       R      R G SP  + IL+ L+LVLL
Sbjct: 61  TVNFQLFLMVLPILLIFFMALYSSSGGWFNFQLRRPEAFHRAGGSPWGVAILLVLLLVLL 120

Query: 121 YFRPSFH 128
            ++ SFH
Sbjct: 121 SYQSSFH 125

[Close]

BLAST of Carg16195 vs. NCBI nr
Match: XP_022763101.1 (uncharacterized protein LOC111308773 [Durio zibethinus])

HSP 1 Score: 131.7 bits (330), Expect = 4.4e-27
Identity = 73/130 (56.15%), Postives = 90/130 (69.23%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQEWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRS 60
           MEW+ P+RRGP+WKQ WTGQTL  SVS+PP  LLTIFGIV+VLLW SQ  TGY  ++H +
Sbjct: 1   MEWVYPRRRGPQWKQGWTGQTL-SSVSAPPIPLLTIFGIVVVLLWLSQ-YTGYKARLHHT 60

Query: 61  ASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSP---RRGASPLTITILVSLIL 120
           A NFQL + +LPIL+IFFM S+S  G   L  W+         R G SP  I ILV ++L
Sbjct: 61  AINFQLFIIILPILLIFFMISFSSSG--RLAFWQQRLEHETVHRSGGSPWGIAILVGVLL 120

Query: 121 VLLYFRPSFH 128
           VLL ++ SFH
Sbjct: 121 VLLCYQSSFH 126

[Close]

BLAST of Carg16195 vs. NCBI nr
Match: GAV91497.1 (hypothetical protein CFOL_v3_34892 [Cephalotus follicularis])

HSP 1 Score: 131.3 bits (329), Expect = 5.7e-27
Identity = 72/128 (56.25%), Postives = 94/128 (73.44%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQEWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRS 60
           MEW   KRRGPEWKQ WTGQT+  S+S+PP  LLT+FGIVIVLL  SQ T  Y++Q+H +
Sbjct: 1   MEWFYTKRRGPEWKQGWTGQTV-ASISTPPAALLTVFGIVIVLLLLSQYTQ-YNSQLHHT 60

Query: 61  ASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRR-GASPLTITILVSLILVL 120
           A+NF+L +FLLPIL+IFFM+++S  G  N +  R   G+ +R G SP  + ILV L+LVL
Sbjct: 61  ATNFKLSIFLLPILLIFFMAAFSSSGRYNFQLPRIGHGAMQRAGGSPWGLAILVLLVLVL 120

Query: 121 LYFRPSFH 128
           L ++ SFH
Sbjct: 121 LSYQSSFH 126

[Close]

BLAST of Carg16195 vs. ExPASy TrEMBL
Match: A0A0A0LLH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263890 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.5e-30
Identity = 84/129 (65.12%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQ--EWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMH 60
           M+   PKRRGPEWK+    TGQTL  SVS PP QLL IFGIVIVLLWFSQ   G++ Q++
Sbjct: 1   MDCFYPKRRGPEWKRGLTGTGQTL-SSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLN 60

Query: 61  RSASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTITILVSLILV 120
           RS   FQL LFLLPI VIFFM SYS   LIN    RS TG  +RGASP TI ILV LILV
Sbjct: 61  RS---FQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILV 120

Query: 121 LLYFRPSFH 128
           LLY++ SFH
Sbjct: 121 LLYYQSSFH 125

[Close]

BLAST of Carg16195 vs. ExPASy TrEMBL
Match: A0A6P6AE81 (uncharacterized protein LOC111308773 OS=Durio zibethinus OX=66656 GN=LOC111308773 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.1e-27
Identity = 73/130 (56.15%), Postives = 90/130 (69.23%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQEWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRS 60
           MEW+ P+RRGP+WKQ WTGQTL  SVS+PP  LLTIFGIV+VLLW SQ  TGY  ++H +
Sbjct: 1   MEWVYPRRRGPQWKQGWTGQTL-SSVSAPPIPLLTIFGIVVVLLWLSQ-YTGYKARLHHT 60

Query: 61  ASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSP---RRGASPLTITILVSLIL 120
           A NFQL + +LPIL+IFFM S+S  G   L  W+         R G SP  I ILV ++L
Sbjct: 61  AINFQLFIIILPILLIFFMISFSSSG--RLAFWQQRLEHETVHRSGGSPWGIAILVGVLL 120

Query: 121 VLLYFRPSFH 128
           VLL ++ SFH
Sbjct: 121 VLLCYQSSFH 126

[Close]

BLAST of Carg16195 vs. ExPASy TrEMBL
Match: A0A1Q3DG80 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_34892 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.8e-27
Identity = 72/128 (56.25%), Postives = 94/128 (73.44%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQEWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRS 60
           MEW   KRRGPEWKQ WTGQT+  S+S+PP  LLT+FGIVIVLL  SQ T  Y++Q+H +
Sbjct: 1   MEWFYTKRRGPEWKQGWTGQTV-ASISTPPAALLTVFGIVIVLLLLSQYTQ-YNSQLHHT 60

Query: 61  ASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRR-GASPLTITILVSLILVL 120
           A+NF+L +FLLPIL+IFFM+++S  G  N +  R   G+ +R G SP  + ILV L+LVL
Sbjct: 61  ATNFKLSIFLLPILLIFFMAAFSSSGRYNFQLPRIGHGAMQRAGGSPWGLAILVLLVLVL 120

Query: 121 LYFRPSFH 128
           L ++ SFH
Sbjct: 121 LSYQSSFH 126

[Close]

BLAST of Carg16195 vs. ExPASy TrEMBL
Match: A0A6M2F915 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.7e-27
Identity = 74/129 (57.36%), Postives = 88/129 (68.22%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQEWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRS 60
           MEW  PKRRGPEWKQ WTGQT+ GSVSSPP  LL IFGIVI LLW S   TGY  Q+H S
Sbjct: 1   MEWFYPKRRGPEWKQGWTGQTM-GSVSSPPLPLLAIFGIVISLLWLSH-YTGYKAQLHHS 60

Query: 61  ASNFQLLLFLLPILVIFFMSSYSMCGLI--NLRSWRSATGSPRRGASPLTITILVSLILV 120
           A N Q+ L LLPIL+I FM+SYS   L+   LRS +  +  P  G+ P  I I V ++L+
Sbjct: 61  AINLQIFLVLLPILLILFMASYSTNWLLYYRLRSSQHDSDPPSSGSFPWGIAIFVVVLLM 120

Query: 121 LLYFRPSFH 128
           LL +R +FH
Sbjct: 121 LLSYRSTFH 127

[Close]

BLAST of Carg16195 vs. ExPASy TrEMBL
Match: A0A7J6EG82 (Uncharacterized protein (Fragment) OS=Cannabis sativa OX=3483 GN=G4B88_009656 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 8.1e-27
Identity = 70/133 (52.63%), Postives = 93/133 (69.92%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQEWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRS 60
           M+WL PKRRGP+WKQ WT QT+  S+S+P   L+ IF IV++LLW SQ  TGY  QM ++
Sbjct: 369 MDWLYPKRRGPQWKQGWTSQTV-SSISAPSFHLMAIFSIVMILLWLSQ-YTGYKAQMQQT 428

Query: 61  ASNFQLLLFLLPILVIFFMSSY-SMCGLINLRSWR-----SATGSPRRGASPLTITILVS 120
           A NFQL +F+LP L+IFFM+SY S  GL+N + WR      A  SP+ G+SP  + I + 
Sbjct: 429 AVNFQLFMFVLPALLIFFMASYSSSSGLLNFQFWRPRPATPARTSPQAGSSPWGVAIFLV 488

Query: 121 LILVLLYFRPSFH 128
           L+LVLL ++ SFH
Sbjct: 489 LLLVLLSYQSSFH 499

[Close]

BLAST of Carg16195 vs. TAIR 10
Match: AT5G42146.1 (unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 41/132 (31.06%), Postives = 70/132 (53.03%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQEWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRS 60
           M W   +RRG  WK+ W  +TL  S S+PP  LL +  I+ +LL+ S S   Y  ++ ++
Sbjct: 1   MGWFIKERRGGSWKRGWLEETLLTS-SAPPLTLLALLAIISLLLFLS-SYPRYKYEVEKT 60

Query: 61  ASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRR-----GASPLTITILVSL 120
           A+N +L +  LPIL +F + S S    +  +S  S   +  +     G  P  + +++ L
Sbjct: 61  AANLKLFMLFLPILFVFVLVSLSFVHRLLFKSSYSVRANQAKSLFGEGNFPWGVLLMLIL 120

Query: 121 ILVLLYFRPSFH 128
           +L+L+  +  FH
Sbjct: 121 LLLLVSKQSYFH 130

The following BLAST results are available for this feature:

BLAST of Carg16195 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010871.1	9.0e-65	100.00	hypothetical protein SDJN02_27669, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN61894.1	7.2e-30	65.12	hypothetical protein Csa_005908 [Cucumis sativus]	[more]
KAF3434655.1	3.4e-27	58.27	hypothetical protein FNV43_RR21740 [Rhamnella rubrinervis]	[more]
XP_022763101.1	4.4e-27	56.15	uncharacterized protein LOC111308773 [Durio zibethinus]	[more]
GAV91497.1	5.7e-27	56.25	hypothetical protein CFOL_v3_34892 [Cephalotus follicularis]	[more]

BLAST of Carg16195 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg16195 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLH8	3.5e-30	65.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263890 PE=4 SV=1	[more]
A0A6P6AE81	2.1e-27	56.15	uncharacterized protein LOC111308773 OS=Durio zibethinus OX=66656 GN=LOC11130877...	[more]
A0A1Q3DG80	2.8e-27	56.25	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_34892 PE=4...	[more]
A0A6M2F915	4.7e-27	57.36	Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1	[more]
A0A7J6EG82	8.1e-27	52.63	Uncharacterized protein (Fragment) OS=Cannabis sativa OX=3483 GN=G4B88_009656 PE...	[more]

BLAST of Carg16195 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42146.1	2.0e-09	31.06	unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 1..127
None	No IPR available	PANTHER	PTHR33306:SF21	EXPRESSED PROTEIN	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16195-RA	Carg16195-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0003824	catalytic activity