Carg16172 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16172
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 3671446 .. 3672057 (-)
RNA-Seq ExpressionCarg16172
SyntenyCarg16172
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATTTAGTCGTAAGAAAGCTAAGAACCACCAAACGCGGCTAGATTCTCCCTCAAAGCTGCTCCAGTTCCTCTACGACCCTATAAATGGCTTTGAATCACTCTCACATGCGCATTTTCTTGACTTTTCAGCCCCGGAAAAGGTGTTTCTCAGTTCCTCTCGTACATTCCTTCTTCTTTTCTATGATCCAAGTTTGAAATTCCGGCATCTCTCTAAAGGTTTCGTATCCTATTCTCTGTTGCTTTCTTTACGATTATCGAATCGCTTCCATGATTCTTCACCCTTCTGTTGTCACTTGTTGATTGGGTTTTAGGTTTTGATTATTGGGTTTTCTTTCTTTTTCATGTTTTTGATTGTTCTCCTAATTATCATCAATTGAAATTCGCCACTGGATGTTTGAAATTCGTCACTTATCGGATTGTTCTTCTGAAATTCGAAGCAAAATTAGTGTTCCTGTCGGTTTGTTCTTCATTTCTGGTTCTTGTTCTATCGTTGGTTTGTTGTTCTGCTGATTGAGTTGTGCTGAAACCCTGTTTATCTAATTGTTTAGGATCTCCGTTCGAATCATAGGGCTCATAATCGTAGTTTCTCCTTGGAATTGCTGTCTTGA

mRNA sequence

ATGATATTTAGTCGTAAGAAAGCTAAGAACCACCAAACGCGGCTAGATTCTCCCTCAAAGCTGCTCCAGTTCCTCTACGACCCTATAAATGGCTTTGAATCACTCTCACATGCGCATTTTCTTGACTTTTCAGCCCCGGAAAAGGATCTCCGTTCGAATCATAGGGCTCATAATCGTAGTTTCTCCTTGGAATTGCTGTCTTGA

Coding sequence (CDS)

ATGATATTTAGTCGTAAGAAAGCTAAGAACCACCAAACGCGGCTAGATTCTCCCTCAAAGCTGCTCCAGTTCCTCTACGACCCTATAAATGGCTTTGAATCACTCTCACATGCGCATTTTCTTGACTTTTCAGCCCCGGAAAAGGATCTCCGTTCGAATCATAGGGCTCATAATCGTAGTTTCTCCTTGGAATTGCTGTCTTGA

Protein sequence

MIFSRKKAKNHQTRLDSPSKLLQFLYDPINGFESLSHAHFLDFSAPEKDLRSNHRAHNRSFSLELLS
Homology
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BLAST of Carg16172 vs. NCBI nr
Match: KAG7010851.1 (hypothetical protein SDJN02_27647, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.1 bits (344), Expect = 5.5e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MIFSRKKAKNHQTRLDSPSKLLQFLYDPINGFESLSHAHFLDFSAPEKDLRSNHRAHNRS 60
          MIFSRKKAKNHQTRLDSPSKLLQFLYDPINGFESLSHAHFLDFSAPEKDLRSNHRAHNRS
Sbjct: 1  MIFSRKKAKNHQTRLDSPSKLLQFLYDPINGFESLSHAHFLDFSAPEKDLRSNHRAHNRS 60

Query: 61 FSLELLS 68
          FSLELLS
Sbjct: 61 FSLELLS 67

The following BLAST results are available for this feature:
BLAST of Carg16172 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010851.15.5e-29100.00hypothetical protein SDJN02_27647, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg16172 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16172 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16172 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16172-RACarg16172-RAmRNA