Carg16165 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16165
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 3643489 .. 3643931 (+)
RNA-Seq ExpressionCarg16165
SyntenyCarg16165
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAAAAAAAAAAAAAAAAAAGAGAAGGATTCAGATGGCTGCAAAGACCGGCCGCCGGCTATGAAAGAAAATAAAGCTTAGTGATGGATTTTGGAATTTTAATGTTCATCAACAGCAAGAAATTAAGTTGGTATAAATCATCGTTGGAAAATCCGTTTCAAGAAAAGCATCGTCGGAGAAAAATCTTAACTAATCGTGGTGTCAATCGGGGAAAGGACTCGTCGTCGAACGCCGTTGGAGCTCGCCAGAAAGCTTCAGTAAGTTTAGGGCTCTGTTTTTTCTCTCTGTTTCCAGCCGAATACCTCTGATAGGTCGCCATCTCCTTCACCTCAGATTCGCCTCATTGTTTACAATGCCTTGAATGAGCAGTCATGGCCGAGCCTTGAATCATGTCGCCGGAAGAACTAAAAATCCAGAAAATCAGAGGTAAGCGCAGTTC

mRNA sequence

ATGACAAAAAAAAAAAAAAAAAAAAGAGAAGGATTCAGATGGCTGCAAAGACCGGCCGCCGGCTATGAAAGAAAATAAAGCTTAGTGATGGATTTTGGAATTTTAATGTTCATCAACAGCAAGAAATTAAGTTGGTATAAATCATCGTTGGAAAATCCGTTTCAAGAAAAGCATCGTCGGAGAAAAATCTTAACTAATCGTGGTGTCAATCGGGGAAAGGACTCGTCGTCGAACGCCGTTGGAGCTCGCCAGAAAGCTTCAATTCGCCTCATTGTTTACAATGCCTTGAATGAGCAGTCATGGCCGAGCCTTGAATCATGTCGCCGGAAGAACTAAAAATCCAGAAAATCAGAGGTAAGCGCAGTTC

Coding sequence (CDS)

ATGGATTTTGGAATTTTAATGTTCATCAACAGCAAGAAATTAAGTTGGTATAAATCATCGTTGGAAAATCCGTTTCAAGAAAAGCATCGTCGGAGAAAAATCTTAACTAATCGTGGTGTCAATCGGGGAAAGGACTCGTCGTCGAACGCCGTTGGAGCTCGCCAGAAAGCTTCAATTCGCCTCATTGTTTACAATGCCTTGAATGAGCAGTCATGGCCGAGCCTTGAATCATGTCGCCGGAAGAACTAA

Protein sequence

MDFGILMFINSKKLSWYKSSLENPFQEKHRRRKILTNRGVNRGKDSSSNAVGARQKASIRLIVYNALNEQSWPSLESCRRKN
Homology
[Close]
BLAST of Carg16165 vs. NCBI nr
Match: KAG7010844.1 (hypothetical protein SDJN02_27640 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.2 bits (417), Expect = 2.3e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MDFGILMFINSKKLSWYKSSLENPFQEKHRRRKILTNRGVNRGKDSSSNAVGARQKASIR 60
          MDFGILMFINSKKLSWYKSSLENPFQEKHRRRKILTNRGVNRGKDSSSNAVGARQKASIR
Sbjct: 1  MDFGILMFINSKKLSWYKSSLENPFQEKHRRRKILTNRGVNRGKDSSSNAVGARQKASIR 60

Query: 61 LIVYNALNEQSWPSLESCRRKN 83
          LIVYNALNEQSWPSLESCRRKN
Sbjct: 61 LIVYNALNEQSWPSLESCRRKN 82

[Close]
BLAST of Carg16165 vs. NCBI nr
Match: KAG6571013.1 (hypothetical protein SDJN03_29928, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.0 bits (380), Expect = 4.5e-33
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0 

Query: 7  MFINSKKLSWYKSSLENPFQEKHRRRKILTNRGVNRGKDSSSNAVGARQKASIRLIVYNA 66
          MFI SKKLSWYKSSLENPFQEKHRRRKILTNRGVNRGKDSSSNAVGARQKASIRLIVYNA
Sbjct: 1  MFITSKKLSWYKSSLENPFQEKHRRRKILTNRGVNRGKDSSSNAVGARQKASIRLIVYNA 60

Query: 67 LNEQSWPSLESCRRKN 83
          LNEQSWPSLESCRRKN
Sbjct: 61 LNEQSWPSLESCRRKN 76

The following BLAST results are available for this feature:
BLAST of Carg16165 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010844.12.3e-37100.00hypothetical protein SDJN02_27640 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6571013.14.5e-3398.68hypothetical protein SDJN03_29928, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg16165 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16165 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16165 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16165-RACarg16165-RAmRNA