Carg16143 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16143
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 3484728 .. 3487468 (+)
RNA-Seq ExpressionCarg16143
SyntenyCarg16143
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATGACAGAAAGAGGTACTTTACGCAATCCATTAGGCCTGTTGTCGTCGAGTCTACCCATTATTTCACAATGGTAATATTTAGCTAATACAGGTTGCCTGGAATCTCCTGCACACAACTTGTCAGCAATACTAAAGAGGCTGCAACTTAAATGCGGCAATAAAGTAAGGTATGTCCTCCAAGTTATCTCTATCATACTTGTAATCTGTAGATAATTTATTTTCACCTGGTACATTTTTTTTCGAAGGAATGAATTTTTCTTCTTTGGGTTTTACTTTTGTATTTCCCCTCGAGATTTTTAAAATGCGTTTGTTAGGAGGATTTTCCTTTTGGGCTTCCCTCAAGATTTTTAAAATGCGTTTGTTAGGCAGAGATTTTCATACCCTTATAAAAAATGTTTCGTCCTCCTCCCCAACTGATGTGGGATTTCACAATCTACCACCCCCTTTGGGGTCTAGCGTCCTTGCTGGCAATCGTTCCGTTCTCCAATCGATATGGGACCTCCCAATCCACCCCCTTCAGGGCCCAACGTCCTTGCTGGTACACCAACTTGTGTCCATCCCCCTTCGAGGTTTAGCCTTCTCGCTGACACATCGCCTGGTGTCTGGCTCTGATACCATTTGTAACGCCCAAGCCCACCGCTAGCAAATATTATCCTCTTTGGACTTTTCTTTTCAGACTTTCTCTCAAGGTTTTTAAAAGCGTCTGCTAGAGAGAGGTTTTCACACTCTTATAGAGTCGTTCTCCTCACCAACCGATGTGGGATCTCACAAGTTGGGAATCTTCTTCTTTTTTCAAGTTTGTATAAATAAAAGTTGCTAACCGTTTAAATTGTTAATTCAAATTCATGATGATTTGAGTAACCTGGGGCTTTTGATAAAAGCTGAAGAGTAGCTTTTTATCATTGGAGTTTTTTGTTTCCTTGCACAAGTAAATCTCGAGTCATACTGAAAGTGATGGAAAGTTGAACTTGTTAAGGAACTTAGATATTGAAAAGCTATCTTACTCGAAGAGAAAAAGGATGAGAAAGAGAAGAGGAGATTCACTAATTGGTCTGTGAGTGTGATAAAGGGGACCACTTTTAGATCAGGTTTTAAGCTTTAGCATAGAAGACAATATAACTTTGTGAGGAGATGAGGAGGCTGACCGTGTGATGTCCAAGCAACCTACAGATAAGCTATTAGAGAGGAATTTGTCTCGGCAGTATAGCAAAACTAGCAGCCATTATTTCGTTAAGAAGCCTGATCAATATCAACATAGCCATGAGGTGATATATCAGTACAGTAAGTAGCACTATGGCTACGAAACACTTAAATTATGCAAAATAGGCCGAGAGCTTTCTAATGGCACTCTGGAGGATCGTGCACAATTTAACTGTCTTTGTTGATATCAAAGCCCTAACCGTGAGAAATTATTATAGTTGCAAGGCCTCCACAATCTAAATATGATAAGAGTTTGGCATCAAAAAAGGAGTCGAGGTTATGAGCAATAAAGGTCGCTGGACATAGGAGTAGAAATTGAGCATGCATTTTCTATGTTATTTTCCTCGAGAAGTCAAAAAGTGTAATACTTTTGAGGTGGAAGTTGATCATCTTGAGGGCACTAATGCCGAAAAAGTATTTTAGAGTCAAGTGGCCGTGAATTTAATGAACATAGATTGGTCTGCCCTTGAACTTTGGAACCAAGATGCAGTAGACATGTCTTGATCTTGTCAAACCAGGAACATAAAGCCTTCTTTAAGCCCATCGGGTGCCTTGTTTAACTGATCAGTTTTTTACCCATCTTTATGGACATAAAATCCTTGAGATTTCTCCATGAGAACTCTCTCGTAGATCACCATCTCAGGGTTCAGACTTCCCCAATTCACCCATAAGGTCAGAGCTTCCATTACCCAAAATTTAGGTTGAAATGGAATATTACCCAGATCTTGAAAGCAAGGTTGAATAACCTTTTGCTATCATTAGCAACATATGATAGTACAATAGAGACCCTCGTTAGTTTTCAACTCTCAATCTCGCTCTCGTGCTTCTTCAATTTTGTTCCACATTATTGCTTAAAATCGCGAATTTGCTCTCAATCTTGCTTAGTCTCTTTGTTTAAGTGGAGAGAAGCAGAGAGGGCGCAGAGAAAAGGGGAGGGAGGGAGAAAGAGGAGGGAGACGAGAAGGAAGAGAGAGGGAGAGAATTTGTTTGGTTTTAATGTGTCATGGTCGTATTTCTTCAATCGTGCGACGTCGTAATCTTGACACGCTCAAAACAAGGTTTAAAGGGGAACTCAAGCCACATCCACATTTTTTGCCTGGCTTTGCAGCTTTGTCAGACCTTAGGCGAGATTTGTCTTCGTCCACCAAGCATCACTTGTGTAGTTTCAAGCTTGTTCTGCCACACATGCTACATATACGTGCATGTTCACTTGTTTGTGACAATGCAGTCTCAAGCAAAATGTTATACGACCATAATTTTAGAAACTGGGTAATATTTCATTTGAACCCAAAATTTAGGTCGGGTAAGGGGAAATAGGCAATGACAAAAAAGTGTATTATTCTTGGAAGACTCTTGGATAGGTGAAGCTTCTTTTCCTGAAATCTATGCCTTGGCAAATAGCAAAAATCGACCCATCAGTCAGATTTGGAAGTCTAGCTCGATGGCCACCCATTTCTGAACCCTCAACCCTAAACCTTGATGAACTCGCCCATAGTGTCCTTCCTAGCATTATCATTATCCTTCTCCAGGCTTGA

mRNA sequence

ATGGTGATGACAGAAAGAGGTTGCCTGGAATCTCCTGCACACAACTTGTCAGCAATACTAAAGAGGCTGCAACTTAAATGCGGCAATAAAGTGAAGCTTCTTTTCCTGAAATCTATGCCTTGGCAAATAGCAAAAATCGACCCATCAGTCAGATTTGGAAGTCTAGCTCGATGGCCACCCATTTCTGAACCCTCAACCCTAAACCTTGATGAACTCGCCCATAGTGTCCTTCCTAGCATTATCATTATCCTTCTCCAGGCTTGA

Coding sequence (CDS)

ATGGTGATGACAGAAAGAGGTTGCCTGGAATCTCCTGCACACAACTTGTCAGCAATACTAAAGAGGCTGCAACTTAAATGCGGCAATAAAGTGAAGCTTCTTTTCCTGAAATCTATGCCTTGGCAAATAGCAAAAATCGACCCATCAGTCAGATTTGGAAGTCTAGCTCGATGGCCACCCATTTCTGAACCCTCAACCCTAAACCTTGATGAACTCGCCCATAGTGTCCTTCCTAGCATTATCATTATCCTTCTCCAGGCTTGA

Protein sequence

MVMTERGCLESPAHNLSAILKRLQLKCGNKVKLLFLKSMPWQIAKIDPSVRFGSLARWPPISEPSTLNLDELAHSVLPSIIIILLQA
Homology
[Close]
BLAST of Carg16143 vs. NCBI nr
Match: KAG7010822.1 (hypothetical protein SDJN02_27618, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.1 bits (440), Expect = 5.3e-40
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MVMTERGCLESPAHNLSAILKRLQLKCGNKVKLLFLKSMPWQIAKIDPSVRFGSLARWPP 60
          MVMTERGCLESPAHNLSAILKRLQLKCGNKVKLLFLKSMPWQIAKIDPSVRFGSLARWPP
Sbjct: 1  MVMTERGCLESPAHNLSAILKRLQLKCGNKVKLLFLKSMPWQIAKIDPSVRFGSLARWPP 60

Query: 61 ISEPSTLNLDELAHSVLPSIIIILLQA 88
          ISEPSTLNLDELAHSVLPSIIIILLQA
Sbjct: 61 ISEPSTLNLDELAHSVLPSIIIILLQA 87

[Close]
BLAST of Carg16143 vs. NCBI nr
Match: KAG6570984.1 (Protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 244, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 5.9e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1   MVMTERGCLESPAHNLSAILKRLQLKCGNKVK 33
           MVMTERGCLESPAHNLSAI KRLQLKCGNKV+
Sbjct: 495 MVMTERGCLESPAHNLSAIPKRLQLKCGNKVR 526

The following BLAST results are available for this feature:
BLAST of Carg16143 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010822.15.3e-40100.00hypothetical protein SDJN02_27618, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6570984.15.9e-0793.75Protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 244, chloroplastic, partial [Cuc... [more]
BLAST of Carg16143 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16143 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16143 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16143-RACarg16143-RAmRNA