Carg16111 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16111
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-H2 finger protein ATL18-like
Location	Carg_Chr20: 3314203 .. 3314652 (+)
RNA-Seq Expression	Carg16111
Synteny	Carg16111

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGTTTAATTTTTCTCAATTCGCGTATTGGACTCGCCATCATTTTCTTCAACACTTTCGTATGGATCCCGTTATTTCGTGTCAAGGAAGCGATTCTCGGTATCGCTAGTGTCTTCCGCCTCGCTTCCTTGCCAGAAATGGACAGCTCCCGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAACGGAAGAGGAGGAGATGTGCTCCATCTGTTTGACGGAATTCGCGAGAGAAGATTCCGTGTGCAAATTGCCGGATTGTGCGCACGTTTTTCACTTCGATTGCATCGAGAAATGGCATGAGAGGAATCGCTTCACTTGTCCTCTCTGTAGATGCTTCTTCAACATCGAGAAACACCATGAGAAGAAGCTCCGCTTCGTTGTTCCAGATAATCCTTCCTCCCTTTATTATTTCTTGCAGTGA

mRNA sequence

ATGTTAGGTTTAATTTTTCTCAATTCGCGTATTGGACTCGCCATCATTTTCTTCAACACTTTCGTATGGATCCCGTTATTTCGTGTCAAGGAAGCGATTCTCGGTATCGCTAGTGTCTTCCGCCTCGCTTCCTTGCCAGAAATGGACAGCTCCCGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAACGGAAGAGGAGGAGATGTGCTCCATCTGTTTGACGGAATTCGCGAGAGAAGATTCCGTGTGCAAATTGCCGGATTGTGCGCACGTTTTTCACTTCGATTGCATCGAGAAATGGCATGAGAGGAATCGCTTCACTTGTCCTCTCTGTAGATGCTTCTTCAACATCGAGAAACACCATGAGAAGAAGCTCCGCTTCGTTGTTCCAGATAATCCTTCCTCCCTTTATTATTTCTTGCAGTGA

Coding sequence (CDS)

ATGTTAGGTTTAATTTTTCTCAATTCGCGTATTGGACTCGCCATCATTTTCTTCAACACTTTCGTATGGATCCCGTTATTTCGTGTCAAGGAAGCGATTCTCGGTATCGCTAGTGTCTTCCGCCTCGCTTCCTTGCCAGAAATGGACAGCTCCCGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAACGGAAGAGGAGGAGATGTGCTCCATCTGTTTGACGGAATTCGCGAGAGAAGATTCCGTGTGCAAATTGCCGGATTGTGCGCACGTTTTTCACTTCGATTGCATCGAGAAATGGCATGAGAGGAATCGCTTCACTTGTCCTCTCTGTAGATGCTTCTTCAACATCGAGAAACACCATGAGAAGAAGCTCCGCTTCGTTGTTCCAGATAATCCTTCCTCCCTTTATTATTTCTTGCAGTGA

Protein sequence

MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCRCFFNIEKHHEKKLRFVVPDNPSSLYYFLQ

Homology

[Close]

BLAST of Carg16111 vs. NCBI nr
Match: KAG7010790.1 (RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 309.7 bits (792), Expect = 1.4e-80
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRR 60
           MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRR
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRR 60

Query: 61  YEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 120
           YEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR
Sbjct: 61  YEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 120

Query: 121 CFFNIEKHHEKKLRFVVPDNPSSLYYFLQ 150
           CFFNIEKHHEKKLRFVVPDNPSSLYYFLQ
Sbjct: 121 CFFNIEKHHEKKLRFVVPDNPSSLYYFLQ 149

[Close]

BLAST of Carg16111 vs. NCBI nr
Match: XP_023512248.1 (RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.1 bits (788), Expect = 4.0e-80
Identity = 147/149 (98.66%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRR 60
           MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG+ASVFRLASLPEMDSSRGGTLLVRR
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGVASVFRLASLPEMDSSRGGTLLVRR 60

Query: 61  YEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 120
           YEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR
Sbjct: 61  YEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 120

Query: 121 CFFNIEKHHEKKLRFVVPDNPSSLYYFLQ 150
           CFFNIEKHHE+KLRFVVPDNPSSLYYFLQ
Sbjct: 121 CFFNIEKHHERKLRFVVPDNPSSLYYFLQ 149

[Close]

BLAST of Carg16111 vs. NCBI nr
Match: XP_022944066.1 (RING-H2 finger protein ATL18-like [Cucurbita moschata] >KAG6570951.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 305.8 bits (782), Expect = 2.0e-79
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRR 60
           MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG+ASVFRL SLPEMDSSRGGTLLVRR
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGVASVFRLVSLPEMDSSRGGTLLVRR 60

Query: 61  YEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 120
           YEELQRSDDR EEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR
Sbjct: 61  YEELQRSDDRAEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 120

Query: 121 CFFNIEKHHEKKLRFVVPDNPSSLYYFLQ 150
           CFFNIEKHHEKKLRFVVPDNPSSLYYFLQ
Sbjct: 121 CFFNIEKHHEKKLRFVVPDNPSSLYYFLQ 149

[Close]

BLAST of Carg16111 vs. NCBI nr
Match: XP_022947864.1 (E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata])

HSP 1 Score: 226.1 bits (575), Expect = 2.0e-55
Identity = 115/151 (76.16%), Postives = 124/151 (82.12%), Query Frame = 0


Query: 2   LGLIFLNSR-IGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRR 61
           LGL   N R   LAI FFNT+VWIPL R+K+AI+G  SVFRLA +PE D S GGTLLVRR
Sbjct: 80  LGLQLRNRRCFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRR 139

Query: 62  YEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 121
           YEELQRSDDR  EEE+CSICL EFAR DSVC LPDC+HVFHFDCIEKW ERNRFTCPLCR
Sbjct: 140 YEELQRSDDRA-EEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCR 199

Query: 122 C--FFNIEKHHEKKLRFVVPDNPSSLYYFLQ 150
           C  FFNI   HE+KL+FVVPDNPS LYYFLQ
Sbjct: 200 CFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ 229

[Close]

BLAST of Carg16111 vs. NCBI nr
Match: KAG6604984.1 (RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035019.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.1 bits (575), Expect = 2.0e-55
Identity = 110/139 (79.14%), Postives = 119/139 (85.61%), Query Frame = 0


Query: 13  LAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTE 72
           LAI FFNT+VWIPL R+K+AI+G  SVFRLA +PE D S GGTLLVRRYEELQRSDDR  
Sbjct: 6   LAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRA- 65

Query: 73  EEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCRC--FFNIEKHHE 132
           EEE+CSICL EFAR DSVC LPDC+HVFHFDCIEKW ERNRFTCPLCRC  FFNI   HE
Sbjct: 66  EEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRHE 125

Query: 133 KKLRFVVPDNPSSLYYFLQ 150
           +KL+FVVPDNPS LYYFLQ
Sbjct: 126 RKLQFVVPDNPSCLYYFLQ 143

[Close]

BLAST of Carg16111 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-12
Identity = 47/122 (38.52%), Postives = 59/122 (48.36%), Query Frame = 0


Query: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRR 60
           M+ ++F  S +  A I F T V IPL R+K          +     +     G  L+   
Sbjct: 1   MISMLFPRSPLCTAAIVFYTCVCIPLGRLK----------KNGGDADAHDDDGYNLV--- 60

Query: 61  YEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 120
              +   D   EEE  C ICL EF  ED+V  LP CAH+FH +CIE W  R   TCPLCR
Sbjct: 61  --GVMFGDKEKEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCR 107

Query: 121 CF 123
            F
Sbjct: 121 SF 107

[Close]

BLAST of Carg16111 vs. ExPASy Swiss-Prot
Match: O22255 (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.5e-10
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 72  EEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 121
           EE+E CS+CL+EF  ED    LP C H FH DCI+ W  R+R TCPLCR
Sbjct: 103 EEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWF-RSRSTCPLCR 150

[Close]

BLAST of Carg16111 vs. ExPASy Swiss-Prot
Match: Q9SUS5 (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-09
Identity = 27/71 (38.03%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 51  SRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKW-H 110
           S   TL       ++ SD  T+ E+ C++CL++F  +D + +LP C HVFH  C+++W  
Sbjct: 59  STSATLANELIPVVRFSDLLTDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIV 118

Query: 111 ERNRFTCPLCR 121
           + N+ TCP+CR
Sbjct: 119 DCNKITCPICR 129

[Close]

BLAST of Carg16111 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-09
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 75  EMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 121
           E CS+CL+EF  +D    LP C HVFH DCI+ W  R+R +CPLCR
Sbjct: 111 EECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWF-RSRSSCPLCR 155

[Close]

BLAST of Carg16111 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 68  DDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCRCFFNIE 127
           +D+++  + CS+CL EF  ++ +  +P+C HVFH DCI+ W + N   CPLCR   + E
Sbjct: 125 EDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNA-NCPLCRTSVSCE 182

[Close]

BLAST of Carg16111 vs. ExPASy TrEMBL
Match: A0A6J1FTE6 (RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 9.6e-80
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRR 60
           MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG+ASVFRL SLPEMDSSRGGTLLVRR
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGVASVFRLVSLPEMDSSRGGTLLVRR 60

Query: 61  YEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 120
           YEELQRSDDR EEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR
Sbjct: 61  YEELQRSDDRAEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 120

Query: 121 CFFNIEKHHEKKLRFVVPDNPSSLYYFLQ 150
           CFFNIEKHHEKKLRFVVPDNPSSLYYFLQ
Sbjct: 121 CFFNIEKHHEKKLRFVVPDNPSSLYYFLQ 149

[Close]

BLAST of Carg16111 vs. ExPASy TrEMBL
Match: A0A6J1G855 (E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita moschata OX=3662 GN=LOC111451622 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 9.7e-56
Identity = 115/151 (76.16%), Postives = 124/151 (82.12%), Query Frame = 0


Query: 2   LGLIFLNSR-IGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRR 61
           LGL   N R   LAI FFNT+VWIPL R+K+AI+G  SVFRLA +PE D S GGTLLVRR
Sbjct: 80  LGLQLRNRRCFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRR 139

Query: 62  YEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 121
           YEELQRSDDR  EEE+CSICL EFAR DSVC LPDC+HVFHFDCIEKW ERNRFTCPLCR
Sbjct: 140 YEELQRSDDRA-EEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCR 199

Query: 122 C--FFNIEKHHEKKLRFVVPDNPSSLYYFLQ 150
           C  FFNI   HE+KL+FVVPDNPS LYYFLQ
Sbjct: 200 CFFFFNIRNRHERKLQFVVPDNPSCLYYFLQ 229

[Close]

BLAST of Carg16111 vs. ExPASy TrEMBL
Match: A0A6J1I5X8 (RING-H2 finger protein ATL18 OS=Cucurbita maxima OX=3661 GN=LOC111469894 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.5e-51
Identity = 104/136 (76.47%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 16  IFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEE 75
           IFFNT+VWIPL R+K+AI+G  SVFRLA +PE D S GGTLLVRRYEELQR  DR  EEE
Sbjct: 6   IFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRRYDRA-EEE 65

Query: 76  MCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCRC--FFNIEKHHEKKL 135
           +CSICL EFAR DSVC L DC+HVFHF CIEKW ERNRFTCPLCRC  FFNI   HE+KL
Sbjct: 66  ICSICLMEFARGDSVCVLLDCSHVFHFSCIEKWLERNRFTCPLCRCFFFFNIGNRHERKL 125

Query: 136 RFVVPDNPSSLYYFLQ 150
           +FVVPDNPS LYYFLQ
Sbjct: 126 QFVVPDNPSCLYYFLQ 140

[Close]

BLAST of Carg16111 vs. ExPASy TrEMBL
Match: A0A6J1CHK3 (RING-H2 finger protein ATL64 OS=Momordica charantia OX=3673 GN=LOC111011236 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.7e-40
Identity = 90/138 (65.22%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 13  LAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTE 72
           L +IF    V IPLF +K+AIL +A+VFR +S P            RRYEEL+R +D T 
Sbjct: 3   LPLIFVYDLVCIPLFHLKQAILSLATVFRFSSPPG-----------RRYEELRRRNDGTA 62

Query: 73  EEE-MCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCRCFFNIEKHHEK 132
           E+E MCSICLTEFAR+DSV +LPDCAHVFH +CIEKW ERN FTCPLCRCFFNIE   E 
Sbjct: 63  EDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCRCFFNIENRPE- 122

Query: 133 KLRFVVPDNPSSLYYFLQ 150
           KLRFV+PDNPS LYYFLQ
Sbjct: 123 KLRFVIPDNPSCLYYFLQ 128

[Close]

BLAST of Carg16111 vs. ExPASy TrEMBL
Match: A0A5A7TXY0 (RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00410 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 7.5e-40
Identity = 90/152 (59.21%), Postives = 114/152 (75.00%), Query Frame = 0


Query: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG-IASVFRLASLPEMDSSRGGTLLVR 60
           MLGL +L S +   I+FF+TF+WIPLFR+K+AILG +A+VF L S P+  +     ++VR
Sbjct: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTD---LVVVR 60

Query: 61  RYEELQRSDDRTEEEEMCSICLTEFAR-EDSVCKLPDCAHVFHFDCIEKWHERNRFTCPL 120
            Y+E    D     EE+CSICLTEF R EDSVCKLP+C H+FHF+CI++W +RNRFTCPL
Sbjct: 61  SYDE----DHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPL 120

Query: 121 CRCFFNIEKHH-EKKLRFVVPDNPSSLYYFLQ 150
           CRCFF  + H  + K RF+VPDNPSSLYYFLQ
Sbjct: 121 CRCFFLEDNHKMDTKWRFLVPDNPSSLYYFLQ 145

[Close]

BLAST of Carg16111 vs. TAIR 10
Match: AT4G38140.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-13
Identity = 47/122 (38.52%), Postives = 59/122 (48.36%), Query Frame = 0


Query: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRR 60
           M+ ++F  S +  A I F T V IPL R+K          +     +     G  L+   
Sbjct: 1   MISMLFPRSPLCTAAIVFYTCVCIPLGRLK----------KNGGDADAHDDDGYNLV--- 60

Query: 61  YEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 120
              +   D   EEE  C ICL EF  ED+V  LP CAH+FH +CIE W  R   TCPLCR
Sbjct: 61  --GVMFGDKEKEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCR 107

Query: 121 CF 123
            F
Sbjct: 121 SF 107

[Close]

BLAST of Carg16111 vs. TAIR 10
Match: AT2G47560.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-11
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 72  EEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 121
           EE+E CS+CL+EF  ED    LP C H FH DCI+ W  R+R TCPLCR
Sbjct: 103 EEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWF-RSRSTCPLCR 150

[Close]

BLAST of Carg16111 vs. TAIR 10
Match: AT4G11360.1 (RING-H2 finger A1B )

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-10
Identity = 27/71 (38.03%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 51  SRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKW-H 110
           S   TL       ++ SD  T+ E+ C++CL++F  +D + +LP C HVFH  C+++W  
Sbjct: 59  STSATLANELIPVVRFSDLLTDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIV 118

Query: 111 ERNRFTCPLCR 121
           + N+ TCP+CR
Sbjct: 119 DCNKITCPICR 129

[Close]

BLAST of Carg16111 vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 3.6e-10
Identity = 30/74 (40.54%), Postives = 39/74 (52.70%), Query Frame = 0


Query: 49  DSSRGGTLLVRRYEEL-QRSDDRTEEEEM-CSICLTEFAREDSVCKLPDCAHVFHFDCIE 108
           DS R   + +  +E L +    R E E M C +CL  F  E+ V +L  C H FH  C++
Sbjct: 57  DSKRRRRISITHFESLCENRGSRNEREAMDCCVCLCGFKEEEEVSELVSCKHYFHSACLD 116

Query: 109 KWHERNRFTCPLCR 121
           KW   N  TCPLCR
Sbjct: 117 KWFGNNHTTCPLCR 130

[Close]

BLAST of Carg16111 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-10
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 75  EMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR 121
           E CS+CL+EF  +D    LP C HVFH DCI+ W  R+R +CPLCR
Sbjct: 111 EECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWF-RSRSSCPLCR 155

The following BLAST results are available for this feature:

BLAST of Carg16111 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010790.1	1.4e-80	100.00	RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_023512248.1	4.0e-80	98.66	RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]	[more]
XP_022944066.1	2.0e-79	97.99	RING-H2 finger protein ATL18-like [Cucurbita moschata] >KAG6570951.1 RING-H2 fin...	[more]
XP_022947864.1	2.0e-55	76.16	E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata]	[more]
KAG6604984.1	2.0e-55	79.14	RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]

BLAST of Carg16111 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL4	2.2e-12	38.52	RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1	[more]
O22255	3.5e-10	59.18	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1	[more]
Q9SUS5	1.7e-09	38.03	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 ...	[more]
Q9LZJ6	6.6e-09	56.52	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]
P93823	1.1e-08	40.68	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]

BLAST of Carg16111 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FTE6	9.6e-80	97.99	RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 ...	[more]
A0A6J1G855	9.7e-56	76.16	E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1I5X8	1.5e-51	76.47	RING-H2 finger protein ATL18 OS=Cucurbita maxima OX=3661 GN=LOC111469894 PE=4 SV...	[more]
A0A6J1CHK3	5.7e-40	65.22	RING-H2 finger protein ATL64 OS=Momordica charantia OX=3673 GN=LOC111011236 PE=4...	[more]
A0A5A7TXY0	7.5e-40	59.21	RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Carg16111 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38140.1	1.6e-13	38.52	RING/U-box superfamily protein	[more]
AT2G47560.1	2.5e-11	59.18	RING/U-box superfamily protein	[more]
AT4G11360.1	1.2e-10	38.03	RING-H2 finger A1B	[more]
AT1G67856.1	3.6e-10	40.54	RING/U-box superfamily protein	[more]
AT3G62690.1	4.7e-10	56.52	AtL5	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 77..119 e-value: 4.3E-6 score: 36.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 76..120 e-value: 5.8E-13 score: 49.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 77..120 score: 13.020386
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 47..124 e-value: 7.8E-18 score: 65.9
None	No IPR available	PANTHER	PTHR45969:SF9	ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN	coord: 5..123
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 5..123
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 63..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16111-RA	Carg16111-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane