Carg16105 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16105
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nuclear transcription factor Y subunit B-3
Location	Carg_Chr20: 3289590 .. 3290105 (+)
RNA-Seq Expression	Carg16105
Synteny	Carg16105

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTATTTTTCAATCTCCAAAACAAACCCATTTCCGCTTCACAAATCTTTACACCAACAACAACAAGAAGAACAGAAAGAACTAACCTTTCTCTCCTCCGATCACCGGAATTTCTCGTCGGCGTCAGCTCCTACTGTGGATTTGCTGTCGGAAAGTGAATGTGCCGATGATAATTTCACGATCACCGAGGAATCTGAAGTGGAGTGGCCGTTTTTTGACCGGTCAACGGCGAATAACCTTTACCGGTCTGATGATGGTTCCATTTCTGACGAGGAAAGTTTGATTGAAATCGCTCTCCCGACCGGACATTACGTCAGCCATAAGTCCGATGACGACGACGACGACATGTCGTTTTGTTTCCAGAAACTGTCGGAGTTTCAAAAGCTGAAGAGGAAGAAGAATCTTGTGGAGCTGTTGGCTGAAATTAACGACATCAACGAGGAGGAGAATTTGATCGAGATAGACATATCTATGGGATCCATTAAATATTCAAGGTTCGAAATTGAAGCTTAA

mRNA sequence

ATGCTTTATTTTTCAATCTCCAAAACAAACCCATTTCCGCTTCACAAATCTTTACACCAACAACAACAAGAAGAACAGAAAGAACTAACCTTTCTCTCCTCCGATCACCGGAATTTCTCGTCGGCGTCAGCTCCTACTGTGGATTTGCTGTCGGAAAGTGAATGTGCCGATGATAATTTCACGATCACCGAGGAATCTGAAGTGGAGTGGCCGTTTTTTGACCGGTCAACGGCGAATAACCTTTACCGGTCTGATGATGGTTCCATTTCTGACGAGGAAAGTTTGATTGAAATCGCTCTCCCGACCGGACATTACGTCAGCCATAAGTCCGATGACGACGACGACGACATGTCGTTTTGTTTCCAGAAACTGTCGGAGTTTCAAAAGCTGAAGAGGAAGAAGAATCTTGTGGAGCTGTTGGCTGAAATTAACGACATCAACGAGGAGGAGAATTTGATCGAGATAGACATATCTATGGGATCCATTAAATATTCAAGGTTCGAAATTGAAGCTTAA

Coding sequence (CDS)

ATGCTTTATTTTTCAATCTCCAAAACAAACCCATTTCCGCTTCACAAATCTTTACACCAACAACAACAAGAAGAACAGAAAGAACTAACCTTTCTCTCCTCCGATCACCGGAATTTCTCGTCGGCGTCAGCTCCTACTGTGGATTTGCTGTCGGAAAGTGAATGTGCCGATGATAATTTCACGATCACCGAGGAATCTGAAGTGGAGTGGCCGTTTTTTGACCGGTCAACGGCGAATAACCTTTACCGGTCTGATGATGGTTCCATTTCTGACGAGGAAAGTTTGATTGAAATCGCTCTCCCGACCGGACATTACGTCAGCCATAAGTCCGATGACGACGACGACGACATGTCGTTTTGTTTCCAGAAACTGTCGGAGTTTCAAAAGCTGAAGAGGAAGAAGAATCTTGTGGAGCTGTTGGCTGAAATTAACGACATCAACGAGGAGGAGAATTTGATCGAGATAGACATATCTATGGGATCCATTAAATATTCAAGGTTCGAAATTGAAGCTTAA

Protein sequence

MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

Homology

[Close]

BLAST of Carg16105 vs. NCBI nr
Match: KAG7010784.1 (hypothetical protein SDJN02_27580, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 334.7 bits (857), Expect = 4.6e-88
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 60
           MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF
Sbjct: 1   MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 60

Query: 61  TITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDDDDMSFC 120
           TITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDDDDMSFC
Sbjct: 61  TITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDDDDMSFC 120

Query: 121 FQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
           FQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 121 FQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 171

[Close]

BLAST of Carg16105 vs. NCBI nr
Match: XP_022943897.1 (uncharacterized protein LOC111448485 [Cucurbita moschata])

HSP 1 Score: 325.9 bits (834), Expect = 2.1e-85
Identity = 169/175 (96.57%), Postives = 170/175 (97.14%), Query Frame = 0


Query: 1   MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 60
           MLYFSISKTNPFPLHKSLHQQQQ+EQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF
Sbjct: 55  MLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 114

Query: 61  TITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDD----DD 120
           T TEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDD    DD
Sbjct: 115 TTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDDDDDEDD 174

Query: 121 MSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
           MSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 175 MSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 229

[Close]

BLAST of Carg16105 vs. NCBI nr
Match: KAG6570945.1 (hypothetical protein SDJN03_29860, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 324.3 bits (830), Expect = 6.2e-85
Identity = 169/175 (96.57%), Postives = 170/175 (97.14%), Query Frame = 0


Query: 1   MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 60
           MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF
Sbjct: 1   MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 60

Query: 61  TITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDD----DD 120
           T TEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTG+YVSHKSDDDD    DD
Sbjct: 61  TTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGNYVSHKSDDDDDDDQDD 120

Query: 121 MSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
           MSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 121 MSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 175

[Close]

BLAST of Carg16105 vs. NCBI nr
Match: XP_022985724.1 (uncharacterized protein LOC111483694 [Cucurbita maxima])

HSP 1 Score: 322.4 bits (825), Expect = 2.4e-84
Identity = 167/173 (96.53%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 60
           MLYFSISKTNPFPLHKSLH QQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF
Sbjct: 55  MLYFSISKTNPFPLHKSLHHQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 114

Query: 61  TITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDD--DDMS 120
           T TEESEVEWPFFDRSTA NLYRSDDGSISDEESLIEIALPTGHYV+HKSDDDD  DDMS
Sbjct: 115 TTTEESEVEWPFFDRSTAKNLYRSDDGSISDEESLIEIALPTGHYVNHKSDDDDDKDDMS 174

Query: 121 FCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
           FCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 175 FCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 227

[Close]

BLAST of Carg16105 vs. NCBI nr
Match: XP_023513390.1 (uncharacterized protein LOC111777891 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.8 bits (769), Expect = 7.4e-78
Identity = 160/174 (91.95%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 60
           MLYFSISKTNPFPLHKSLHQQQ+EEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF
Sbjct: 55  MLYFSISKTNPFPLHKSLHQQQEEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 114

Query: 61  TITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDD---DDM 120
           T TEESEVEWPFFDRSTA N+YRSDDGSISDEESLIEIALPT HYVSHKSDDDD   DDM
Sbjct: 115 TTTEESEVEWPFFDRSTAKNIYRSDDGSISDEESLIEIALPTRHYVSHKSDDDDDDKDDM 174

Query: 121 SFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
           SF      EFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 175 SF------EFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 222

[Close]

BLAST of Carg16105 vs. ExPASy TrEMBL
Match: A0A6J1FUA8 (uncharacterized protein LOC111448485 OS=Cucurbita moschata OX=3662 GN=LOC111448485 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.0e-85
Identity = 169/175 (96.57%), Postives = 170/175 (97.14%), Query Frame = 0


Query: 1   MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 60
           MLYFSISKTNPFPLHKSLHQQQQ+EQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF
Sbjct: 55  MLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 114

Query: 61  TITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDD----DD 120
           T TEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDD    DD
Sbjct: 115 TTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDDDDDEDD 174

Query: 121 MSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
           MSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 175 MSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 229

[Close]

BLAST of Carg16105 vs. ExPASy TrEMBL
Match: A0A6J1JE34 (uncharacterized protein LOC111483694 OS=Cucurbita maxima OX=3661 GN=LOC111483694 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.1e-84
Identity = 167/173 (96.53%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 60
           MLYFSISKTNPFPLHKSLH QQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF
Sbjct: 55  MLYFSISKTNPFPLHKSLHHQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 114

Query: 61  TITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDD--DDMS 120
           T TEESEVEWPFFDRSTA NLYRSDDGSISDEESLIEIALPTGHYV+HKSDDDD  DDMS
Sbjct: 115 TTTEESEVEWPFFDRSTAKNLYRSDDGSISDEESLIEIALPTGHYVNHKSDDDDDKDDMS 174

Query: 121 FCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
           FCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 175 FCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 227

[Close]

BLAST of Carg16105 vs. ExPASy TrEMBL
Match: A0A0A0KCP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112470 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 8.5e-56
Identity = 129/178 (72.47%), Postives = 147/178 (82.58%), Query Frame = 0


Query: 1   MLYFSISKTNPFPLHKSLHQQQQEE-QKELTFLSSDHRNFSSASAPTV-DLLSESECADD 60
           MLYFSISK N  P+ K + ++++EE QK+LTF  SDH   SSASAPT+ DLLSESECADD
Sbjct: 3   MLYFSISKRNSLPIRKFVQEEEEEEDQKQLTFF-SDHLKSSSASAPTIEDLLSESECADD 62

Query: 61  NFTITEESEVEWPFFDR--STANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDD---D 120
           NFT TEESEVEWP+FD   +   N +RSDDGSISDEESLIEIALPTGHYVS K DD   D
Sbjct: 63  NFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDED 122

Query: 121 DDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
           +DD+SF +QKL++FQ    +KNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 123 EDDISFRYQKLTDFQ----RKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 175

[Close]

BLAST of Carg16105 vs. ExPASy TrEMBL
Match: A0A6J1CG35 (uncharacterized protein LOC111011203 OS=Momordica charantia OX=3673 GN=LOC111011203 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.1e-55
Identity = 131/182 (71.98%), Postives = 147/182 (80.77%), Query Frame = 0


Query: 1   MLYFSISKTN------PFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESE 60
           MLYF+ISK N      P P+ K + ++++E + E++F S   + FSSASAPT DLLSESE
Sbjct: 55  MLYFAISKRNSLPIPIPIPIEKFVEEEEEEAEAEVSFDSD--QKFSSASAPTGDLLSESE 114

Query: 61  CADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDD-- 120
           CADDNFT TEESEVEWPF DR+TA+N  RS DGSISDEESLIEIALPTGHYVSHK DD  
Sbjct: 115 CADDNFTTTEESEVEWPFSDRTTAHNPDRS-DGSISDEESLIEIALPTGHYVSHKFDDDE 174

Query: 121 ---DDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEI 172
              D+DDMSF  QKLS+FQK   +KNLVELLAEINDINEEENLIEIDISMGSIKYSRFEI
Sbjct: 175 EDEDEDDMSFHLQKLSDFQK---QKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEI 230

[Close]

BLAST of Carg16105 vs. ExPASy TrEMBL
Match: A0A5D3CJH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001550 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.2e-54
Identity = 131/182 (71.98%), Postives = 144/182 (79.12%), Query Frame = 0


Query: 1   MLYFSISKTNPFPLHKSLHQQQQEE---QKELTFLSSDHRNFSSASAPTV-DLLSESECA 60
           MLYFSISK +  P+ K + +Q++EE   QKELTF  SDH   SSASAPT  DLLSESECA
Sbjct: 3   MLYFSISKRSSLPIQKFVQEQEEEEEEDQKELTFF-SDHLKSSSASAPTTRDLLSESECA 62

Query: 61  DDNFTITEESEVEWPFFDRS--TANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDD-- 120
           DDNFT TEESEVEWP+FD     A + +RSDDGSISDEESLIEIALPTGHYVS K DD  
Sbjct: 63  DDNFTTTEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVD 122

Query: 121 ---DDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEI 172
              D+DD  F +QKLS+FQ    KKNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEI
Sbjct: 123 EDEDEDDTPFRYQKLSDFQ----KKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEI 179

[Close]

BLAST of Carg16105 vs. TAIR 10
Match: AT2G04480.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35870.1); Has 38 Blast hits to 38 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-16
Identity = 59/163 (36.20%), Postives = 90/163 (55.21%), Query Frame = 0


Query: 12  FPL---HKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEV 71
           FP+   H S+   +Q++ +E  +++            T D+  +SE   +N   T E + 
Sbjct: 125 FPISLPHSSIQSSKQDQDQEGHYIA------------TKDITGKSE---ENLEKTNEED- 184

Query: 72  EWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDDDDMSFCFQKLSEFQ 131
                           DDG+I D+ESLIE++LP+GHY+ H  + + + + +   K+ +F+
Sbjct: 185 ----------------DDGAIPDDESLIELSLPSGHYLGHHYNSNKNHL-YIHNKVQDFR 244

Query: 132 KLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
                  L +LL EIND  EE+NLIEIDIS+GSIKYSRFEI+A
Sbjct: 245 -------LFDLLNEINDFTEEDNLIEIDISIGSIKYSRFEIKA 247

[Close]

BLAST of Carg16105 vs. TAIR 10
Match: AT5G35870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 8.8e-13
Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 0


Query: 76  STANNLYRS---DDGSISDEESLIEIALPTGHYVSHKSDD--DDDDMSFCFQKLSEFQKL 135
           +T N++ ++   DDG+I DEESLIE++LP+GHY+ H         D    +  + +F+  
Sbjct: 107 TTTNDIVKNNDEDDGTIPDEESLIELSLPSGHYIGHHYSTMIGKQDQKIMYNNIPDFR-- 166

Query: 136 KRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
                L++L AE     E++NLIEIDIS+GSIK SRF+I+A
Sbjct: 167 -----LIQLSAEY----EDDNLIEIDISIGSIKCSRFQIKA 196

The following BLAST results are available for this feature:

BLAST of Carg16105 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010784.1	4.6e-88	100.00	hypothetical protein SDJN02_27580, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022943897.1	2.1e-85	96.57	uncharacterized protein LOC111448485 [Cucurbita moschata]	[more]
KAG6570945.1	6.2e-85	96.57	hypothetical protein SDJN03_29860, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022985724.1	2.4e-84	96.53	uncharacterized protein LOC111483694 [Cucurbita maxima]	[more]
XP_023513390.1	7.4e-78	91.95	uncharacterized protein LOC111777891 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg16105 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg16105 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUA8	1.0e-85	96.57	uncharacterized protein LOC111448485 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A6J1JE34	1.1e-84	96.53	uncharacterized protein LOC111483694 OS=Cucurbita maxima OX=3661 GN=LOC111483694...	[more]
A0A0A0KCP7	8.5e-56	72.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112470 PE=4 SV=1	[more]
A0A6J1CG35	1.1e-55	71.98	uncharacterized protein LOC111011203 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A5D3CJH9	1.2e-54	71.98	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Carg16105 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04480.1	2.2e-16	36.20	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35870.1	8.8e-13	42.57	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35708:SF3	GB\|AAD25831.1	coord: 19..171
None	No IPR available	PANTHER	PTHR35708	GB\|AAD25831.1	coord: 19..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16105-RA	Carg16105-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane