Carg16092 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16092
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 3217171 .. 3217832 (-)
RNA-Seq ExpressionCarg16092
SyntenyCarg16092
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCATCTTCCATTCCCGAGTTCTTATACATTTCTCACGTTAGACACCTTCAAGCTTCTGTTTTTTCACGTTCTCTTTTCAGTGTACAGTTTGTTTAAACATAAATAGAATTTCCCGATCTGCTTCCTAACTGAATTTGCTTTACATAATCAATTGTACACAATCCAGAGGCTTAAGGAAAGTTGCTGACAAATCTTACAGGAAGCTCAAGATGTCTGTCCTAATCATCGTGCTTCCTCTCAGATCTTAGCTCGGCAAGATTTGGCTCTCTGGTTCTTCGCTAATCGGTCGGTATTATGGAAATCTGGACTTTGTTTTTCGATCTTATAAGGAATTGAATCAAGTTTGGATCCCGGTAATCCTTCTTTTTGATTCAAATGCTTTCTGGGTTTTCTCAGGTTTGTTGAAATTTTGTCGAGCAATTGATCGACGATGGATCCAGTGTTCCCAAATTGATTTTTCCAATATCTCTTCCTTTGAGATATATACATTTCCTGGATTGCCTCTCGATTCAAATAAGGTACTGCTTCTGTTATTGATTTGTTATTCACCCGCATTTGATTCCATTTTCTTCTTCTCTTTCAGCTCCAAGATGTTACAGATTACATTTCTTCACCTTATGTTCACACACCGATCTTCTACTATGATGAATCGCCATAG

mRNA sequence

ATGTTCATCTTCCATTCCCGAGTTCTTATACATTTCTCACGTTTGTTGAAATTTTGTCGAGCAATTGATCGACGATGGATCCAGTGTTCCCAAATTGATTTTTCCAATATCTCTTCCTTTGAGATATATACATTTCCTGGATTGCCTCTCGATTCAAATAAGCTCCAAGATGTTACAGATTACATTTCTTCACCTTATGTTCACACACCGATCTTCTACTATGATGAATCGCCATAG

Coding sequence (CDS)

ATGTTCATCTTCCATTCCCGAGTTCTTATACATTTCTCACGTTTGTTGAAATTTTGTCGAGCAATTGATCGACGATGGATCCAGTGTTCCCAAATTGATTTTTCCAATATCTCTTCCTTTGAGATATATACATTTCCTGGATTGCCTCTCGATTCAAATAAGCTCCAAGATGTTACAGATTACATTTCTTCACCTTATGTTCACACACCGATCTTCTACTATGATGAATCGCCATAG

Protein sequence

MFIFHSRVLIHFSRLLKFCRAIDRRWIQCSQIDFSNISSFEIYTFPGLPLDSNKLQDVTDYISSPYVHTPIFYYDESP
Homology
[Close]
BLAST of Carg16092 vs. NCBI nr
Match: KAG7010771.1 (hypothetical protein SDJN02_27567, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MFIFHSRVLIHFSRLLKFCRAIDRRWIQCSQIDFSNISSFEIYTFPGLPLDSNKLQDVTD 60
          MFIFHSRVLIHFSRLLKFCRAIDRRWIQCSQIDFSNISSFEIYTFPGLPLDSNKLQDVTD
Sbjct: 1  MFIFHSRVLIHFSRLLKFCRAIDRRWIQCSQIDFSNISSFEIYTFPGLPLDSNKLQDVTD 60

Query: 61 YISSPYVHTPIFYYDESP 79
          YISSPYVHTPIFYYDESP
Sbjct: 61 YISSPYVHTPIFYYDESP 78

[Close]
BLAST of Carg16092 vs. NCBI nr
Match: KAG6570930.1 (hypothetical protein SDJN03_29845, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.1 bits (344), Expect = 6.4e-29
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 15 LLKFCRAIDRRWIQCSQIDFSNISSFEIYTFPGLPLDSNKLQDVTDYISSPYVHTPIFYY 74
          LLKFCRAIDRRWIQCSQIDFSNIS FEIYTFPGLPLDSNKLQDVTDYISSPYVHTPIFYY
Sbjct: 15 LLKFCRAIDRRWIQCSQIDFSNISPFEIYTFPGLPLDSNKLQDVTDYISSPYVHTPIFYY 74

Query: 75 DESP 79
          DESP
Sbjct: 75 DESP 78

The following BLAST results are available for this feature:
BLAST of Carg16092 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010771.11.7e-37100.00hypothetical protein SDJN02_27567, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6570930.16.4e-2998.44hypothetical protein SDJN03_29845, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg16092 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16092 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16092 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16092-RACarg16092-RAmRNA