Carg16083 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16083
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nuclear cap-binding protein subunit 2
Location	Carg_Chr20: 3175498 .. 3180114 (-)
RNA-Seq Expression	Carg16083
Synteny	Carg16083

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAATATTGGGCAAGTTTATTGTGCATAACGCAGCGTGGGGGAAGAATTGCACGAGCAGAATCGGGCTACTGAGCTCACCCAACGAGTTCTCCAGTTCTTAAGCTAATTCCAACCCGAAATTTACCTGCTAATTTGATTTGAAGCGGCTCTAATCTGTGCTTTACTTCTTCCTTTTCCACTTCTGTTTCTCGCATTGGCTGATTATATTATCGCCCAAATTCCCGACACCTGATATAGACGATTGCATTTTGAACCTTTGATTCGTTGAGTGTCTGCTAGCTACTTCAGCTAGAGTGGTTTTTCGAGTTTTGTTGCAGATTTTGTTCTTCTTGGGTTCATGGCTTCGTTGTTCAAGGTAAATTGCTTTTCTATTTCCATTTTAGATAACGAAGAACTTTTCCTGCAGTTAATGCCTAATATTTTATTGCATGGTTGATTCGTTTTCCGCTCCATTAGGTTTTTGGGGTGTGTCAAAGGCGTCTTTGCAAGTTATATTCGGACATGTCTGAGAGTTAGTTTCTGTGAACTGCATGAAGGAAATTTGTTGTTTCGATTTATTTTATTTGCTACGACACTCATTTTGGTACCAAATGTCTGAGACGTAGTTTTCTGATCGATGTTATAGTTTTGTCACCATTATTATTATTATTCTTATTATTTTGAGTTATTGGTGAGATTTGAACTTTTTACCTTTTATCGAAGATATATGCTTAAATCAATTGAGATGATGATTTTGTTACCAAAGGGTACTCTGATTATTGTTACGACACACGGTTAAAATGTTTAAAAGCATTCGAAGTAAGAGGAATCTATTGAAAGGAATAATGTCGCATGTATGTAGTTAGGTGATAGGTGATGTTTCTATGATTCTATCTAAGACAAGCTTCCTGCTTTCAACTTGATCATTTGTAGGACCCATCAAAGCTATCTGTATACCGGGATAGAAGATTTCAGGGAACCCAAGATGAATTTGAACTGGCTCTTCAGACTTCAACCACCGTTTACGTGGGAAATATGTCCTTTTATACAACAGAAGAGCAAGTTTATGAGCTTTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTGTAAGACTTCATAGTTCTTCTTCCTAACTAGTAGAATATATTGATGTGCTTTTTATCAATATTCAACCATACAATTATATTATGCCAATTGGAGTTATTCAATAAACGTATTTAATTATGTATTTGCTGCTCAAAACTGTCTGCTGTTATTAGCCCTCTGTGCAAGAGAGACAGGGGGAGGGAGAGAGTAGTCTCTCGAAAATACTCGTGTGTTACTGTCCTTGCAATTTAACTTTATAATGATTTTTCTTTGATACCCTGAGTTCTATCAGCAGTTCATTAATGCAGCCTACTGCTTTCTTCTGTCCATATACATCACTTCATATGCACCTAGATGTATATTGATCCTCGTGATTGTCACCTGCTTAGTGCAAAATCATTTTGAATAATTGAAGGCAGTTGGGAATGATCGCTATTCGATCTATCTGGGTCCATTTTAACCTTGAGATTGTTTGCTCATCTCATGCCTTTGGTACTCATTCTTGCAAAAAATGTTTTACACATGTCTGCATTTAAGCCTTTCAATTTATGGGGCTATCCTTTTAAAATGGTTGCTTATTTTATCTACACTTTGTTAGATACTATTCTCGGGAGGATACCGAGGATGCTGTAAAATATATAAGTGGAACAATTCTTGATGATCGGCCCATCCGTGCGGATTTTGATTGGGGATTTCAGGATGGCAGGCAATGGGGTCGTGGTCGAAGTGGTGGACAGGTAGTGTTTCTGATCTATGTCAAATTAATTCATGACTTGGAGTCCTACAATCACTTCCTGTTTATTTCATTTTGCTTTGTTGTTCACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGATATCCTTTTTTTCTTTTAATACTGTTACTCACTATATAGATTATGGAAATCATTGTCTGATGCACTGAAAAATAGATATCTTTTGCATTTTTTTGGGTACCATTTATCAACTCAATATTCATTTGTTGTCCTCTCTCTTTTTATATATACATATATATAGAATAGAATATACACAGTTGATTCATATCACTCAGTTTTTTTAGCAAAATCTAAACACAATTACACAAATCCAAGTTTCATAAAATTAAATTGATTACAACCTCAAAAGGCGAGGATGCAACACGTCATTTTCTAAAAAACCATTACATGGATATGTTGGAGACAGTTTGTTTCATATAGAATATATGTGTATGTATTGATATATTACGTCATTTTCTTACAAAAAAATTACTGGATATGTGGAGAAGTTTTGTTTCATATTAATATTCAGCTTCACATAACTTACCATAATTGTCTGTCTCTCGTCTAGACTCTTATCATATATTCTAATCAACCTTAATACACATCACTCTATAGTAGACGATATAAGTGGAAGATAAGAAGTAATACCCATCTCCTTTTACACAGTTGAAACCATTCTCATATCCACTCCAAGTCTTCTTATATGAATAATCCTAATAGCACTCGAAGATATGAAACAAATCAGCAAGATTTACATAAACTTCAAATTCGATACCAATCTTACCAAACAATCACTTAAGGCGATTGACTTTGCAATCATCACATAACCACCACACCATATCCATCAACCATACACGTCCACTTATCTCTTATAAAGAACAATTAAGCTATTGGATCTAATGCGATTGGAAGACTATGTTCTTTTTATACTTATAAACGAAATTCACTCAAGATGTTATCGATAATTGATAGGGATTTTGACTAATCTAGTAAATAGTACTAGCATAAAACGTGCGTAAGTTTTTACCCGTAAAAAAAATACTGCAATCTTTCCAACGATAAACAAACATATAGAGAGCCTCTCGTGATACAATTCAACACATATAGATACGACTTATTGATGTGGGTCATGATGAGATAGTAGAGATCGAAATATGTGATCCTAGCATGGTTTCTGAAACTGATCTAGTGAAGAGATATCGATGAACATCAGAATAATAGTTCTATAGACTCCACTCCTTTTTCACTCTTCATGTTTTCACTTTTTTTTTCTCACTTATCAGAACTTGTTAGGATTCTGTTGCCTTGCACTGGATTTAGGCCTATTATTTTGCTCCTAAATTCAATGCCCATCCTCTGGTGGCTAGTAGTTGCACAAAACTGTAAAAGTGGAAACTATTAAATTATTCAATCTTTATACAATGTTGGATATGCGCTGGGTCACATGGTAATTCTGCTATTGTGTCTACGAGAGCAAAACTTAGATATATAGTCCATGTCCAACACTTGTCTGAGTACGACATAGACAGTCTACCTAAAACAGAGTGTTCATGCCTCCTAGATTACAACTAGGAGCCAAACATTCCAAGAGGGGATCAATAACCCATTAGTGCGAATGGCTAACTTACACATTGACTACCGTTGCGCTACTGAGTGCCTTCTGTTTAGTTTGTCGTTCCTCAATTGGCATGTGACAAACGTCCTTAACTTTTGTTAAATTTAATATCATAGCTCATTCATATATAAATTTTGTCTGATAATGTTCATTTTTTGACACCCCATGTCCTTTAAATTTCACATTTCTTTGTAGTTTCCTTAATTTATTGAACGTAGAGGTGGCTATGGAAAGTTAGTTCAGAAAGAGTTGGAAGCACAGAGGCAGCTTGTGGATTACGGTACTGGTTCACTAGGCTCTATGCCGTCAGTCGTACCCCAGTGTGAGTCTGCTTTATGAGGGACAATCCTATGTAGGCGACGTATGCCATTAAACGTTATGATTGATATGCCTTGACTTCCTGTTTTTTTTTTTTTTTATTTTCTGCAGACGGTTTAACACATGGATTTTGGAAGCACGGAAATTGGGCCTCTCATGGAAGAGTATCAATTTCTAAAGCATTAAATCATCTGATGAATGGGAATTATTTTGGCATTCCGGGCGTTTCTTGATATTTATCAGACTACATTATTGTTGTTTAAAAACACTAGATTACCACATCGTAAGCGCATACCACAAAGAGATGATGACGCTATGCCCATGAAAGCTCCAAGAGAACTCAGATTTAATTGATCTAGAAGAAATCCCTGAATATAGAATCAAGATCCGTGTAACTCTTCATAAAAATGAATGCTTCATCTTAGCATGTTTGAAAGTGGTTTTTGTATAGTCGGTATTCAACGTTGAAATCACATTTTAAAAGGGATCTTTCATACACTTATATTATTAAATTTTTAAAATAGATGTGGTTCTAGTTATTTCCATCTCAATTCCAACATGGCCCTTAGTCATCTTGTGTGTTAAGTTTTTGACAAAAGACACCACACCGTGCTTGCCACTGCGGCACTTCCATCTTACAAATATGAATCTTAGTTGTTACCCGATATTAAAACCATTACTATGTACACTGCTTTCTTTGGCTGTTTATGTGTTGCCATGCTTCAGTATTTAACTGTTTGTGCTGTAACAGCACGAAAAATCCAAGGTTTTCCGGGAGAGTGGCGATCTTGATGAAGAGGATTGA

mRNA sequence

TAAATATTGGGCAAGTTTATTGTGCATAACGCAGCGTGGGGGAAGAATTGCACGAGCAGAATCGGGCTACTGAGCTCACCCAACGAGTTCTCCAGTTCTTAAGCTAATTCCAACCCGAAATTTACCTGCTAATTTGATTTGAAGCGGCTCTAATCTGTGCTTTACTTCTTCCTTTTCCACTTCTGTTTCTCGCATTGGCTGATTATATTATCGCCCAAATTCCCGACACCTGATATAGACGATTGCATTTTGAACCTTTGATTCGTTGAGTGTCTGCTAGCTACTTCAGCTAGAGTGGTTTTTCGAGTTTTGTTGCAGATTTTGTTCTTCTTGGGTTCATGGCTTCGTTGTTCAAGGACCCATCAAAGCTATCTGTATACCGGGATAGAAGATTTCAGGGAACCCAAGATGAATTTGAACTGGCTCTTCAGACTTCAACCACCGTTTACGTGGGAAATATGTCCTTTTATACAACAGAAGAGCAAGTTTATGAGCTTTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTATACTATTCTCGGGAGGATACCGAGGATGCTGTAAAATATATAAGTGGAACAATTCTTGATGATCGGCCCATCCGTGCGGATTTTGATTGGGGATTTCAGGATGGCAGGCAATGGGGTCGTGGTCGAAGTGGTGGACAGGTAGTGTTTCTGATCTATGTCAAATTAATTCATGACTTGGAGTCCTACAATCACTTCCTGTTTATTTCATTTTGCTTTGTTGTTCACAGAGGTGGCTATGGAAAGTTAGTTCAGAAAGAGTTGGAAGCACAGAGGCAGCTTGTGGATTACGGTACTGGTTCACTAGGCTCTATGCCGTCAGTCGTACCCCAGTACGGTTTAACACATGGATTTTGGAAGCACGGAAATTGGGCCTCTCATGGAAGACACGAAAAATCCAAGGTTTTCCGGGAGAGTGGCGATCTTGATGAAGAGGATTGA

Coding sequence (CDS)

ATGGCTTCGTTGTTCAAGGACCCATCAAAGCTATCTGTATACCGGGATAGAAGATTTCAGGGAACCCAAGATGAATTTGAACTGGCTCTTCAGACTTCAACCACCGTTTACGTGGGAAATATGTCCTTTTATACAACAGAAGAGCAAGTTTATGAGCTTTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTATACTATTCTCGGGAGGATACCGAGGATGCTGTAAAATATATAAGTGGAACAATTCTTGATGATCGGCCCATCCGTGCGGATTTTGATTGGGGATTTCAGGATGGCAGGCAATGGGGTCGTGGTCGAAGTGGTGGACAGGTAGTGTTTCTGATCTATGTCAAATTAATTCATGACTTGGAGTCCTACAATCACTTCCTGTTTATTTCATTTTGCTTTGTTGTTCACAGAGGTGGCTATGGAAAGTTAGTTCAGAAAGAGTTGGAAGCACAGAGGCAGCTTGTGGATTACGGTACTGGTTCACTAGGCTCTATGCCGTCAGTCGTACCCCAGTACGGTTTAACACATGGATTTTGGAAGCACGGAAATTGGGCCTCTCATGGAAGACACGAAAAATCCAAGGTTTTCCGGGAGAGTGGCGATCTTGATGAAGAGGATTGA

Protein sequence

MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWGRGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTGSLGSMPSVVPQYGLTHGFWKHGNWASHGRHEKSKVFRESGDLDEED

Homology

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BLAST of Carg16083 vs. NCBI nr
Match: KAG7010762.1 (Nuclear cap-binding protein subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 472.6 bits (1215), Expect = 1.9e-129
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120

Query: 121 RGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTG 180
           RGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTG
Sbjct: 121 RGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPSVVPQYGLTHGFWKHGNWASHGRHEKSKVFRESGDLDEED 227
           SLGSMPSVVPQYGLTHGFWKHGNWASHGRHEKSKVFRESGDLDEED
Sbjct: 181 SLGSMPSVVPQYGLTHGFWKHGNWASHGRHEKSKVFRESGDLDEED 226

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BLAST of Carg16083 vs. NCBI nr
Match: KAG6570919.1 (Nuclear cap-binding protein subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 339.0 bits (868), Expect = 3.2e-89
Identity = 188/262 (71.76%), Postives = 190/262 (72.52%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120

Query: 121 RGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTG 180
           RGRSGGQV            + Y         +   RGGYGKLVQKELEAQRQLVDYGTG
Sbjct: 121 RGRSGGQV-----------RDEYR------TDYDPGRGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPSVVPQYGLTHGFWKHGNWASHGR---------------HEKSK----------- 227
           SLGSMPSVVPQYG  HG   HGN   HGR               HE SK           
Sbjct: 181 SLGSMPSVVPQYG-KHG-GSHGNGPRHGRDYHNRKRYRDDDRHAHESSKRTSDYDSRRNP 240

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BLAST of Carg16083 vs. NCBI nr
Match: XP_022943539.1 (nuclear cap-binding protein subunit 2-like isoform X2 [Cucurbita moschata] >XP_022943540.1 nuclear cap-binding protein subunit 2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 337.4 bits (864), Expect = 9.4e-89
Identity = 186/261 (71.26%), Postives = 190/261 (72.80%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120

Query: 121 RGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTG 180
           RGRSGGQV            + Y         +   RGGYGKLVQKELEAQRQLVDYGTG
Sbjct: 121 RGRSGGQV-----------RDEYR------TDYDPGRGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPSVVPQYGLTHGFWKHGNWASHGR---------------HEKSK----------- 227
           SLGS+PSV+PQYG  HG   HGN   HGR               HE SK           
Sbjct: 181 SLGSVPSVIPQYG-KHG-GSHGNGPRHGRDYHNRKRYRDDDRHAHESSKRTSDYDSRRNP 240

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BLAST of Carg16083 vs. NCBI nr
Match: XP_022943536.1 (nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita moschata] >XP_022943537.1 nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita moschata] >XP_022943538.1 nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 337.0 bits (863), Expect = 1.2e-88
Identity = 186/262 (70.99%), Postives = 190/262 (72.52%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120

Query: 121 RGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTG 180
           RGRSGGQV            + Y         +   RGGYGKLVQKELEAQRQLVDYGTG
Sbjct: 121 RGRSGGQV-----------RDEYR------TDYDPGRGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPSVVPQYGLTHGFWKHGNWASHGR---------------HEKSK----------- 227
           SLGS+PSV+PQYG  HG   HGN   HGR               HE SK           
Sbjct: 181 SLGSVPSVIPQYG-KHG-GSHGNGPRHGRDYHNRKRYRDDDRHAHESSKRTSDYDSRRNP 240

[Close]

BLAST of Carg16083 vs. NCBI nr
Match: XP_022986368.1 (nuclear cap-binding protein subunit 2-like isoform X2 [Cucurbita maxima] >XP_022986369.1 nuclear cap-binding protein subunit 2-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 337.0 bits (863), Expect = 1.2e-88
Identity = 186/261 (71.26%), Postives = 189/261 (72.41%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCF LYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFALYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120

Query: 121 RGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTG 180
           RGRSGGQV            + Y         +   RGGYGKLVQKELEAQRQLVDYGTG
Sbjct: 121 RGRSGGQV-----------RDEYR------TDYDPGRGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPSVVPQYGLTHGFWKHGNWASHGR---------------HEKSK----------- 227
           SLGSMPSV+PQYG  HG   HGN   HGR               HE SK           
Sbjct: 181 SLGSMPSVIPQYG-KHG-GSHGNGHRHGRDYHNRKRYRDDDRHAHESSKRTSDYDSRRNP 240

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BLAST of Carg16083 vs. ExPASy Swiss-Prot
Match: Q9XFD1 (Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CBP20 PE=1 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.9e-76
Identity = 147/215 (68.37%), Postives = 166/215 (77.21%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFK+ +KLS YRDRRF GTQ+EF+ AL+ STTVY+GN+SFYTTEEQ+YELFSRAGEI
Sbjct: 1   MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVKYISGTILDDRPIR DFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTG 180
           RGRSGGQV            + Y         +   RGGYGKLVQKELEAQRQLVDYGTG
Sbjct: 121 RGRSGGQV-----------RDEYR------TDYDPARGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPSVVP-QYGLTHGFWKHGNWASHGRHEKSK 215
           SLG+ P   P  YG  +G    GN+   G++   +
Sbjct: 181 SLGAYPQAAPTNYG--NGRRGGGNYGQGGQNRHGR 196

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BLAST of Carg16083 vs. ExPASy Swiss-Prot
Match: Q84L14 (Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CBP20 PE=2 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 5.7e-73
Identity = 152/256 (59.38%), Postives = 167/256 (65.23%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP+KLS YRDRRF GTQ+E+E ALQ S TVYVGNMSFYTTEEQ YELFSRAGEI
Sbjct: 1   MASLFKDPTKLSAYRDRRFTGTQEEYEAALQASVTVYVGNMSFYTTEEQAYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120
           +KIIMGLDKNSKTPCGFCF+LYYSRED EDAVKYISGT+LDDRPIR DFDWGF++GRQWG
Sbjct: 61  RKIIMGLDKNSKTPCGFCFILYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEGRQWG 120

Query: 121 RGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTG 180
           RGRSGGQV            + Y         +   RGGYGK+VQKELEAQR+LVDYG  
Sbjct: 121 RGRSGGQV-----------RDEYR------TDYDPGRGGYGKMVQKELEAQRELVDYGG- 180

Query: 181 SLGSMPSVVPQYGLTHGFWKHGNWASHGR------------------------------H 227
                P+  PQY    G  K G   S+                                 
Sbjct: 181 --AFQPNAPPQY--DRGDRKRGYGDSYRNDRDYQRKRYRNDERSSQRAPDSEFKRDAIDS 234

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BLAST of Carg16083 vs. ExPASy Swiss-Prot
Match: Q9CQ49 (Nuclear cap-binding protein subunit 2 OS=Mus musculus OX=10090 GN=Ncbp2 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.9e-44
Identity = 91/158 (57.59%), Postives = 113/158 (71.52%), Query Frame = 0


Query: 10  KLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDK 69
           +LS YRD+ F+G  +E E  L+ S T+YVGN+SFYTTEEQ+YELFS++G+IKKIIMGLDK
Sbjct: 16  ELSEYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75

Query: 70  NSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWGRGRSGGQVV 129
             KT CGFCFV YYSR D E+A++YI+GT LDDR IR D+D GF++GRQ+GRGRSGGQV 
Sbjct: 76  MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQV- 135

Query: 130 FLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKE 168
                      + Y         +   RGGYGKL QK+
Sbjct: 136 ----------RDEYRE------DYDAGRGGYGKLAQKQ 156

[Close]

BLAST of Carg16083 vs. ExPASy Swiss-Prot
Match: B1WC40 (Nuclear cap-binding protein subunit 2 OS=Rattus norvegicus OX=10116 GN=Ncbp2 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.9e-44
Identity = 91/158 (57.59%), Postives = 113/158 (71.52%), Query Frame = 0


Query: 10  KLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDK 69
           +LS YRD+ F+G  +E E  L+ S T+YVGN+SFYTTEEQ+YELFS++G+IKKIIMGLDK
Sbjct: 16  ELSEYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75

Query: 70  NSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWGRGRSGGQVV 129
             KT CGFCFV YYSR D E+A++YI+GT LDDR IR D+D GF++GRQ+GRGRSGGQV 
Sbjct: 76  MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQV- 135

Query: 130 FLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKE 168
                      + Y         +   RGGYGKL QK+
Sbjct: 136 ----------RDEYRE------DYDAGRGGYGKLAQKQ 156

[Close]

BLAST of Carg16083 vs. ExPASy Swiss-Prot
Match: Q3ZBJ1 (Nuclear cap-binding protein subunit 2 OS=Bos taurus OX=9913 GN=NCBP2 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 7.3e-44
Identity = 90/158 (56.96%), Postives = 112/158 (70.89%), Query Frame = 0


Query: 10  KLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDK 69
           +LS YRD+ F+G  +E E  L+ S T+YVGN+SFYTTEEQ+YELFS++G+IKKIIMGLDK
Sbjct: 16  ELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75

Query: 70  NSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWGRGRSGGQVV 129
             KT CGFCFV YYSR D E+A++YI+GT LDDR IR D+D GF++GRQ+GRGRSGGQV 
Sbjct: 76  MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQV- 135

Query: 130 FLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKE 168
                      + Y         +   RGGYGKL Q +
Sbjct: 136 ----------RDEYRQ------DYDAGRGGYGKLAQNQ 156

[Close]

BLAST of Carg16083 vs. ExPASy TrEMBL
Match: A0A6J1FUM2 (Nuclear cap-binding protein subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111448282 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 4.5e-89
Identity = 186/261 (71.26%), Postives = 190/261 (72.80%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120

Query: 121 RGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTG 180
           RGRSGGQV            + Y         +   RGGYGKLVQKELEAQRQLVDYGTG
Sbjct: 121 RGRSGGQV-----------RDEYR------TDYDPGRGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPSVVPQYGLTHGFWKHGNWASHGR---------------HEKSK----------- 227
           SLGS+PSV+PQYG  HG   HGN   HGR               HE SK           
Sbjct: 181 SLGSVPSVIPQYG-KHG-GSHGNGPRHGRDYHNRKRYRDDDRHAHESSKRTSDYDSRRNP 240

[Close]

BLAST of Carg16083 vs. ExPASy TrEMBL
Match: A0A6J1JFW0 (Nuclear cap-binding protein subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111484127 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 5.9e-89
Identity = 186/261 (71.26%), Postives = 189/261 (72.41%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCF LYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFALYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120

Query: 121 RGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTG 180
           RGRSGGQV            + Y         +   RGGYGKLVQKELEAQRQLVDYGTG
Sbjct: 121 RGRSGGQV-----------RDEYR------TDYDPGRGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPSVVPQYGLTHGFWKHGNWASHGR---------------HEKSK----------- 227
           SLGSMPSV+PQYG  HG   HGN   HGR               HE SK           
Sbjct: 181 SLGSMPSVIPQYG-KHG-GSHGNGHRHGRDYHNRKRYRDDDRHAHESSKRTSDYDSRRNP 240

[Close]

BLAST of Carg16083 vs. ExPASy TrEMBL
Match: A0A6J1FX36 (Nuclear cap-binding protein subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111448282 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 5.9e-89
Identity = 186/262 (70.99%), Postives = 190/262 (72.52%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120

Query: 121 RGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTG 180
           RGRSGGQV            + Y         +   RGGYGKLVQKELEAQRQLVDYGTG
Sbjct: 121 RGRSGGQV-----------RDEYR------TDYDPGRGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPSVVPQYGLTHGFWKHGNWASHGR---------------HEKSK----------- 227
           SLGS+PSV+PQYG  HG   HGN   HGR               HE SK           
Sbjct: 181 SLGSVPSVIPQYG-KHG-GSHGNGPRHGRDYHNRKRYRDDDRHAHESSKRTSDYDSRRNP 240

[Close]

BLAST of Carg16083 vs. ExPASy TrEMBL
Match: A0A6J1J7C7 (Nuclear cap-binding protein subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111484127 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 7.7e-89
Identity = 186/262 (70.99%), Postives = 189/262 (72.14%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCF LYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFALYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120

Query: 121 RGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTG 180
           RGRSGGQV            + Y         +   RGGYGKLVQKELEAQRQLVDYGTG
Sbjct: 121 RGRSGGQV-----------RDEYR------TDYDPGRGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPSVVPQYGLTHGFWKHGNWASHGR---------------HEKSK----------- 227
           SLGSMPSV+PQYG  HG   HGN   HGR               HE SK           
Sbjct: 181 SLGSMPSVIPQYG-KHG-GSHGNGHRHGRDYHNRKRYRDDDRHAHESSKRTSDYDSRRNP 240

[Close]

BLAST of Carg16083 vs. ExPASy TrEMBL
Match: A0A0A0KVX7 (Nuclear cap-binding protein subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_4G129020 PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 4.7e-86
Identity = 178/262 (67.94%), Postives = 184/262 (70.23%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFKDP+KLS+YRDRRF G+QDEFE+ALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI
Sbjct: 1   MASLFKDPTKLSIYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR DFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTG 180
           RGRSGGQV            + Y         F    GGYGKLVQKELEAQRQLVDYGTG
Sbjct: 121 RGRSGGQV-----------RDEYRTDYDPDILFSFQEGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPSVVPQYGLTHGFWKHGNWASHGR---------------HEKSK----------- 227
           SLGSM  V+PQYG   G   HGN   HGR               HE SK           
Sbjct: 181 SLGSMAPVMPQYGKHGGSHGHGN--RHGRDYHHRKRYRDDDRHAHESSKRTSDYESRRNS 240

[Close]

BLAST of Carg16083 vs. TAIR 10
Match: AT5G44200.1 (CAP-binding protein 20 )

HSP 1 Score: 287.0 bits (733), Expect = 1.4e-77
Identity = 147/215 (68.37%), Postives = 166/215 (77.21%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFK+ +KLS YRDRRF GTQ+EF+ AL+ STTVY+GN+SFYTTEEQ+YELFSRAGEI
Sbjct: 1   MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVKYISGTILDDRPIR DFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTG 180
           RGRSGGQV            + Y         +   RGGYGKLVQKELEAQRQLVDYGTG
Sbjct: 121 RGRSGGQV-----------RDEYR------TDYDPARGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPSVVP-QYGLTHGFWKHGNWASHGRHEKSK 215
           SLG+ P   P  YG  +G    GN+   G++   +
Sbjct: 181 SLGAYPQAAPTNYG--NGRRGGGNYGQGGQNRHGR 196

[Close]

BLAST of Carg16083 vs. TAIR 10
Match: AT5G44200.2 (CAP-binding protein 20 )

HSP 1 Score: 287.0 bits (733), Expect = 1.4e-77
Identity = 147/215 (68.37%), Postives = 166/215 (77.21%), Query Frame = 0


Query: 1   MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60
           MASLFK+ +KLS YRDRRF GTQ+EF+ AL+ STTVY+GN+SFYTTEEQ+YELFSRAGEI
Sbjct: 1   MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVKYISGTILDDRPIR DFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVVFLIYVKLIHDLESYNHFLFISFCFVVHRGGYGKLVQKELEAQRQLVDYGTG 180
           RGRSGGQV            + Y         +   RGGYGKLVQKELEAQRQLVDYGTG
Sbjct: 121 RGRSGGQV-----------RDEYR------TDYDPARGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPSVVP-QYGLTHGFWKHGNWASHGRHEKSK 215
           SLG+ P   P  YG  +G    GN+   G++   +
Sbjct: 181 SLGAYPQAAPTNYG--NGRRGGGNYGQGGQNRHGR 196

[Close]

BLAST of Carg16083 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-08
Identity = 27/78 (34.62%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 28  LALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSRED 87
           +A + S  ++V  +S YTT++ + +LFS  G+IK+  +  D  ++ P GF F+ + S +D
Sbjct: 1   MAKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDD 60

Query: 88  TEDAVKYISGTILDDRPI 106
              A+K + G I+D R I
Sbjct: 61  ARKALKSLDGKIVDGRLI 78

[Close]

BLAST of Carg16083 vs. TAIR 10
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-08
Identity = 26/79 (32.91%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 30  LQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTE 89
           ++  TTVY+ N+    T E + EL++  GE+K+  +  DKN + P G   V+Y  R D  
Sbjct: 103 VEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGR-PSGSAEVVYMRRSDAI 162

Query: 90  DAVKYISGTILDDRPIRAD 109
            A++  +  +LD RP++ +
Sbjct: 163 QAMRKYNNVLLDGRPMKLE 180

[Close]

BLAST of Carg16083 vs. TAIR 10
Match: AT1G66260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-08
Identity = 26/79 (32.91%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 30  LQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTE 89
           ++  TTVY+ N+    T E + EL++  GE+K+  +  DKN + P G   V+Y  R D  
Sbjct: 103 VEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGR-PSGSAEVVYMRRSDAI 162

Query: 90  DAVKYISGTILDDRPIRAD 109
            A++  +  +LD RP++ +
Sbjct: 163 QAMRKYNNVLLDGRPMKLE 180

The following BLAST results are available for this feature:

BLAST of Carg16083 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010762.1	1.9e-129	100.00	Nuclear cap-binding protein subunit 2 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6570919.1	3.2e-89	71.76	Nuclear cap-binding protein subunit 2, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022943539.1	9.4e-89	71.26	nuclear cap-binding protein subunit 2-like isoform X2 [Cucurbita moschata] >XP_0...	[more]
XP_022943536.1	1.2e-88	70.99	nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita moschata] >XP_0...	[more]
XP_022986368.1	1.2e-88	71.26	nuclear cap-binding protein subunit 2-like isoform X2 [Cucurbita maxima] >XP_022...	[more]

BLAST of Carg16083 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XFD1	1.9e-76	68.37	Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CBP20 P...	[more]
Q84L14	5.7e-73	59.38	Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q9CQ49	1.9e-44	57.59	Nuclear cap-binding protein subunit 2 OS=Mus musculus OX=10090 GN=Ncbp2 PE=1 SV=...	[more]
B1WC40	1.9e-44	57.59	Nuclear cap-binding protein subunit 2 OS=Rattus norvegicus OX=10116 GN=Ncbp2 PE=...	[more]
Q3ZBJ1	7.3e-44	56.96	Nuclear cap-binding protein subunit 2 OS=Bos taurus OX=9913 GN=NCBP2 PE=2 SV=1	[more]

BLAST of Carg16083 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUM2	4.5e-89	71.26	Nuclear cap-binding protein subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A6J1JFW0	5.9e-89	71.26	Nuclear cap-binding protein subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC11148412...	[more]
A0A6J1FX36	5.9e-89	70.99	Nuclear cap-binding protein subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A6J1J7C7	7.7e-89	70.99	Nuclear cap-binding protein subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC11148412...	[more]
A0A0A0KVX7	4.7e-86	67.94	Nuclear cap-binding protein subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_4G129020...	[more]

BLAST of Carg16083 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G44200.1	1.4e-77	68.37	CAP-binding protein 20	[more]
AT5G44200.2	1.4e-77	68.37	CAP-binding protein 20	[more]
AT3G46020.1	1.3e-08	34.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G66260.1	2.3e-08	32.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G66260.2	2.3e-08	32.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 35..108 e-value: 8.7E-21 score: 85.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 36..106 e-value: 2.1E-13 score: 49.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 34..112 score: 15.118645
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 6..167 e-value: 1.7E-31 score: 111.2
None	No IPR available	PANTHER	PTHR18847:SF0	NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2	coord: 1..209
IPR027157	Nuclear cap-binding protein subunit 2	PANTHER	PTHR18847	20 KD NUCLEAR CAP BINDING PROTEIN	coord: 1..209
IPR034148	NCBP2, RNA recognition motif	CDD	cd12240	RRM_NCBP2	coord: 36..113 e-value: 3.40423E-51 score: 158.864
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 27..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16083-RA	Carg16083-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
cellular_component	GO:0005846	nuclear cap binding complex
molecular_function	GO:0000339	RNA cap binding
molecular_function	GO:0003676	nucleic acid binding