Carg16067 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16067
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	AB hydrolase-1 domain-containing protein
Location	Carg_Chr07: 2067094 .. 2069177 (+)
RNA-Seq Expression	Carg16067
Synteny	Carg16067

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTAGCCTGTGGGGCCATGTACTTGTCATCGTGTTTGCCGTTCTTCATTGAGGCATTTCATCAAACACCTTGTGAGTCCTTTCTCTTAACTGTGGTTTGTCACTTTCTTCCCACTCTTCATCTCTGTGTTTGCTGTGCTGCTAATTACAGTGACAAAAGAGTCCATCCATCTGCAATAGAATCATCCAACAGGTAATAATATTCATTGTTGATAGGTTAGGCATTAGCTGTAAATCTTCATAAATCATGTTCCAGACACAAAGTAATATGGTGTTTGTTGGATGAAACTGATTGGAATATGATAATTAGAGGGTAGGAGCCATAATCATGAAAGCTAACAGAACCTTCTATAAACATGCCTCTATAATTCTTCTCTAAGAGGAGCTTGTTTAGCTTTAAAGAGAGAAAGGTAAAGGATTGGAACATATAATATGAAAAAGTCAACATAATCATAGTACTAACATGGACAACTGCAGCTGTACAAAAATTCTAAATGTCACTCATGAAGTGTTTTGGACCATCCACTCTTTTCCACACCCTTTATTTAATTAGCTAAATGACATTGGTTTATAAAATATCAACGTAGAATCCAATGTTCACATGCATTTGAAACTCCAAGGACCCATTCTCTTTGTGGAATAGACATTTCATTGGATTCCTTTTTATGGAAAGAGCTTCTCTTTGATCCTTTAATCAAGTGATTGAGAACTGGGGCCGACATAAAGATAAGAGAAGATGAGAATTCTCTGTTCTCATTTTGGATTAGCAAAAAATGAAAAAGGCATACAGCTAGAAACTTTTGGTTGGGTAGAAATGTGAATTCCCTCAGGTCATCCTCAGGTCATCCTCAGGTCACCCTCAGGTCACCCTCAGGTCACCCTCAGGTCACCCTCAGGTCACCTGGGAGTTCTTAAGCTTGTCATTTAATATCAAGAAAGTATCAATCAAAGTCAACAGATGGAATCAAAAGTACCCTGCCATTGTGACTCAGAATTCTGGGAAGCTTTAGGAACTATGGGTGACGAAGTAAGCACCAGAGGATCTAAAACAATGGAGAAGGTTGTACCTTGGCAGAGACACCACTTACCTGAAATTGGAATAGTTGGTGCCCCCAGATATCCTGTCTGGCGAGCCATGGCACCATGTGATTGCCCATGATTTGAGAGGCTATGGCGATTTGAAATCGCCACCAAGCCCCCATTCCCACACCGTTCTTCTTTTCCCCTAACATGGTGTAAAGATTTATGCTGTAATAGTACTTTTGAACTGTTCAGGAATTAGGCATTCATCGTGGGAATAGATTGATTGAGAAGCAATTGCTGGGTGACATACGAGCTTGTTCAGACCTGATATAAGGTCGATGGCCTTATCTTGCTCTTCCTTGATTTCCAAGATCTTCACAAACTAAATCTGCTGAATCTATCAGAAAATAATTGGATCTCGTTGTCATGTGGTTCAGTTTCATGTCAGCACAAACATTTTGTTTTCTGCATTGCTTTTCTGAAGAACTGAATACTATGACTTGTTTGTGAAGGAACCAGGAAGAGCAGAGAAAACAATTGCTAGTTCGATTGAACGACAGTAACAAAGGAAGAATCCATCTCAGCCCTTGCTGGTATTGTGATCATTGATTGATCACCTAGAGATACCAATGAAGCTGTCACCATAGACAACGAGAAGGAGCTCCAAATTGGACATGTAAGCAATAACGAACAAGGATTCACATTTCTATTTGTCTGGTTATTTTCCAACAAAGTACAAAGGTGATCCCAATGTGAACCAGATTTTCTTTTTTCGTTTGCTTTTAAAACATGATAATAATGAAGCTTGTTCGTTCTATTATGGTAGCAGGAACTGGGAGCTTCTGGAACCCTGGCCGGGATAAAAAATTGGGGTCCTGACAATAAAGAAATTGGATTCGAATCAGCGAGAACCAAAGAATATGTGGAAGGAGATGTATTCAAGAGCCTCGTACCCGCCCTTGAAGTTATTATATTGGAGGCCACCATTTCATCCAACAGGAGAGAGCTCAGCAAGACTTCCGTGAACTTTTTCCTCTATAAATGTCTTTGTACATAG

mRNA sequence

ATGGATCTAGCCTGTGGGGCCATGTACTTGTCATCGTGTTTGCCGTTCTTCATTGAGGCATTTCATCAAACACCTTGTGAGTCCTTTCTCTTAACTGTGGTTTGTCACTTTCTTCCCACTCTTCATCTCTGTGTTTGCTGTGCTGCTAATTACAGTGACAAAAGAGTCCATCCATCTGCAATAGAATCATCCAACAGGTCATCCTCAGGTCATCCTCAGGTCACCCTCAGGTCACCCTCAGGTCACCCTCAGATGGAATCAAAAGTACCCTGCCATTGTGACTCAGAATTCTGGGAAGCTTTAGGAACTATGGGTGACGAATTGGTGCCCCCAGATATCCTGTCTGGCGAGCCATGGCACCATGTGATTGCCCATGATTTGAGAGGCTATGGCGATTTGAAATCGCCACCAAGCCCCCATTCCCACACCGAACTGGGAGCTTCTGGAACCCTGGCCGGGATAAAAAATTGGGGTCCTGACAATAAAGAAATTGGATTCGAATCAGCGAGAACCAAAGAATATGTGGAAGGAGATGTATTCAAGAGCCTCGTACCCGCCCTTGAAGTTATTATATTGGAGGCCACCATTTCATCCAACAGGAGAGAGCTCAGCAAGACTTCCGTGAACTTTTTCCTCTATAAATGTCTTTGTACATAG

Coding sequence (CDS)

ATGGATCTAGCCTGTGGGGCCATGTACTTGTCATCGTGTTTGCCGTTCTTCATTGAGGCATTTCATCAAACACCTTGTGAGTCCTTTCTCTTAACTGTGGTTTGTCACTTTCTTCCCACTCTTCATCTCTGTGTTTGCTGTGCTGCTAATTACAGTGACAAAAGAGTCCATCCATCTGCAATAGAATCATCCAACAGGTCATCCTCAGGTCATCCTCAGGTCACCCTCAGGTCACCCTCAGGTCACCCTCAGATGGAATCAAAAGTACCCTGCCATTGTGACTCAGAATTCTGGGAAGCTTTAGGAACTATGGGTGACGAATTGGTGCCCCCAGATATCCTGTCTGGCGAGCCATGGCACCATGTGATTGCCCATGATTTGAGAGGCTATGGCGATTTGAAATCGCCACCAAGCCCCCATTCCCACACCGAACTGGGAGCTTCTGGAACCCTGGCCGGGATAAAAAATTGGGGTCCTGACAATAAAGAAATTGGATTCGAATCAGCGAGAACCAAAGAATATGTGGAAGGAGATGTATTCAAGAGCCTCGTACCCGCCCTTGAAGTTATTATATTGGAGGCCACCATTTCATCCAACAGGAGAGAGCTCAGCAAGACTTCCGTGAACTTTTTCCTCTATAAATGTCTTTGTACATAG

Protein sequence

MDLACGAMYLSSCLPFFIEAFHQTPCESFLLTVVCHFLPTLHLCVCCAANYSDKRVHPSAIESSNRSSSGHPQVTLRSPSGHPQMESKVPCHCDSEFWEALGTMGDELVPPDILSGEPWHHVIAHDLRGYGDLKSPPSPHSHTELGASGTLAGIKNWGPDNKEIGFESARTKEYVEGDVFKSLVPALEVIILEATISSNRRELSKTSVNFFLYKCLCT

Homology

[Close]

BLAST of Carg16067 vs. NCBI nr
Match: KAG7026771.1 (hypothetical protein SDJN02_10777, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 459.5 bits (1181), Expect = 1.6e-125
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MDLACGAMYLSSCLPFFIEAFHQTPCESFLLTVVCHFLPTLHLCVCCAANYSDKRVHPSA 60
           MDLACGAMYLSSCLPFFIEAFHQTPCESFLLTVVCHFLPTLHLCVCCAANYSDKRVHPSA
Sbjct: 1   MDLACGAMYLSSCLPFFIEAFHQTPCESFLLTVVCHFLPTLHLCVCCAANYSDKRVHPSA 60

Query: 61  IESSNRSSSGHPQVTLRSPSGHPQMESKVPCHCDSEFWEALGTMGDELVPPDILSGEPWH 120
           IESSNRSSSGHPQVTLRSPSGHPQMESKVPCHCDSEFWEALGTMGDELVPPDILSGEPWH
Sbjct: 61  IESSNRSSSGHPQVTLRSPSGHPQMESKVPCHCDSEFWEALGTMGDELVPPDILSGEPWH 120

Query: 121 HVIAHDLRGYGDLKSPPSPHSHTELGASGTLAGIKNWGPDNKEIGFESARTKEYVEGDVF 180
           HVIAHDLRGYGDLKSPPSPHSHTELGASGTLAGIKNWGPDNKEIGFESARTKEYVEGDVF
Sbjct: 121 HVIAHDLRGYGDLKSPPSPHSHTELGASGTLAGIKNWGPDNKEIGFESARTKEYVEGDVF 180

Query: 181 KSLVPALEVIILEATISSNRRELSKTSVNFFLYKCLCT 219
           KSLVPALEVIILEATISSNRRELSKTSVNFFLYKCLCT
Sbjct: 181 KSLVPALEVIILEATISSNRRELSKTSVNFFLYKCLCT 218

[Close]

BLAST of Carg16067 vs. NCBI nr
Match: KAG6594803.1 (hypothetical protein SDJN03_11356, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183.0 bits (463), Expect = 2.9e-42
Identity = 90/108 (83.33%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MDLACGAMYLSSCLPFFIEAFHQTPCESFLLTVVCHFLPTLHLCVCCAANYSDKRVHPSA 60
           MDLACGAMYLSSCLPFFIEAFHQTPCESFLLTVVCHFLPTLHLCVCCAANYSD+RVHPSA
Sbjct: 1   MDLACGAMYLSSCLPFFIEAFHQTPCESFLLTVVCHFLPTLHLCVCCAANYSDRRVHPSA 60

Query: 61  IESSNRSSSGHPQVTLRSPSGHPQMESKVPCHCDSEFWEALGTMGDEL 109
           IESSNRSSSGHPQV LRSP               SEFWEALGTMGDE+
Sbjct: 61  IESSNRSSSGHPQVILRSP---------------SEFWEALGTMGDEV 93

[Close]

BLAST of Carg16067 vs. NCBI nr
Match: XP_041020651.1 (epoxide hydrolase A-like [Juglans microcarpa x Juglans regia] >XP_041020652.1 epoxide hydrolase A-like [Juglans microcarpa x Juglans regia])

HSP 1 Score: 55.1 bits (131), Expect = 9.0e-04
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 161 NKEIGFESARTKEYVEGDVFKSLVPALEVIILE 194
           +KEIGFE+  TKEYVEGDVFKSLVP LEV+IL+
Sbjct: 264 DKEIGFETMGTKEYVEGDVFKSLVPDLEVVILD 296

[Close]

BLAST of Carg16067 vs. ExPASy TrEMBL
Match: A0A7N2RBH1 (AB hydrolase-1 domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.7e-04
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 161 NKEIGFESARTKEYVEGDVFKSLVPALEVIILE 194
           +K+IGFE+  TKEYVEGDVFKSLVP LEV+IL+
Sbjct: 259 DKDIGFETLGTKEYVEGDVFKSLVPNLEVVILD 291

The following BLAST results are available for this feature:

BLAST of Carg16067 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026771.1	1.6e-125	100.00	hypothetical protein SDJN02_10777, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6594803.1	2.9e-42	83.33	hypothetical protein SDJN03_11356, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_041020651.1	9.0e-04	78.79	epoxide hydrolase A-like [Juglans microcarpa x Juglans regia] >XP_041020652.1 ep...	[more]

BLAST of Carg16067 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg16067 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2RBH1	9.7e-04	75.76	AB hydrolase-1 domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Carg16067 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16067-RA	Carg16067-RA	mRNA