Carg16066 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16066
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Folate transporter 1, chloroplastic
Location	Carg_Chr07: 2073193 .. 2073676 (-)
RNA-Seq Expression	Carg16066
Synteny	Carg16066

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCGCCGGTGCCGTCCGCCGCTGTGCATCCTCTAGATGTCGTCCGCACCCGGTTTCAAGGTAGCTTACTTATGTAACCGCTCAAAGTTAGCTTGCGTTTGTCACCAAAAATCTGGAGTTTCAAGTCTTTTTACCCCTAACATTTGTTTTTGTTCCTTTGCCCTCGAAATGGCAGGTTGTGATCGCAGAGGATCCAGTCTCCCGACTTACAAGAATACAGTTAATGCAATCTTCACTATTGGTCGGATGGAGGTTTGTAGATTCAGTGTTTGCTACTCCTAATTCCGATCATTTGTTGGCCTTTTCTGCTATTTCCCCACGAATTTTGTGATCTGGGCTATACTAATTTGGTTCTTCTGTAAAAGAAATGGTAAACTTAGTGAAAGTGCCTTGAAATTTGCTTGCTTAACCTTTTAGATGAAACTTTGTTCGAATATGGCTCGCAACTCACATTTTCAGGATGAATTCTTCCTCGCATAG

mRNA sequence

ATGCCACCGCCGGTGCCGTCCGCCGCTGTGCATCCTCTAGATGTCGTCCGCACCCGGTTTCAAGGTTGTGATCGCAGAGGATCCAGTCTCCCGACTTACAAGAATACAGTTAATGCAATCTTCACTATTGGTCGGATGGAGATGAAACTTTGTTCGAATATGGCTCGCAACTCACATTTTCAGGATGAATTCTTCCTCGCATAG

Coding sequence (CDS)

ATGCCACCGCCGGTGCCGTCCGCCGCTGTGCATCCTCTAGATGTCGTCCGCACCCGGTTTCAAGGTTGTGATCGCAGAGGATCCAGTCTCCCGACTTACAAGAATACAGTTAATGCAATCTTCACTATTGGTCGGATGGAGATGAAACTTTGTTCGAATATGGCTCGCAACTCACATTTTCAGGATGAATTCTTCCTCGCATAG

Protein sequence

MPPPVPSAAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRMEMKLCSNMARNSHFQDEFFLA

Homology

[Close]

BLAST of Carg16066 vs. NCBI nr
Match: KAG7026773.1 (Folate transporter 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.5 bits (358), Expect = 1.3e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MPPPVPSAAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRMEMKLCSNMARNSHF 60
          MPPPVPSAAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRMEMKLCSNMARNSHF
Sbjct: 1  MPPPVPSAAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRMEMKLCSNMARNSHF 60

Query: 61 QDEFFLA 68
          QDEFFLA
Sbjct: 61 QDEFFLA 67

[Close]

BLAST of Carg16066 vs. NCBI nr
Match: XP_023518563.1 (folate transporter 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 98.6 bits (244), Expect = 2.2e-17
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MPPPVPSAAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRMEM 49
          MPPPV SAAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRME+
Sbjct: 1  MPPPVMSAAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRMEL 48

[Close]

BLAST of Carg16066 vs. NCBI nr
Match: XP_022133344.1 (folate transporter 1, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 9.8e-10
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 8  AAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRME 48
          AAVHPLDVVRTRFQ  D RGS+LPTYKNTVNAIFTI RME
Sbjct: 19 AAVHPLDVVRTRFQVYDGRGSNLPTYKNTVNAIFTIARME 58

[Close]

BLAST of Carg16066 vs. NCBI nr
Match: XP_022133343.1 (folate transporter 1, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 9.8e-10
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 8  AAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRME 48
          AAVHPLDVVRTRFQ  D RGS+LPTYKNTVNAIFTI RME
Sbjct: 19 AAVHPLDVVRTRFQVYDGRGSNLPTYKNTVNAIFTIARME 58

[Close]

BLAST of Carg16066 vs. NCBI nr
Match: XP_038881970.1 (folate transporter 1, chloroplastic isoform X3 [Benincasa hispida])

HSP 1 Score: 71.2 bits (173), Expect = 3.7e-09
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 8  AAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRME 48
          AA+HPLDVVRTRFQ  D RGS+LPTYKNTVNAIFTI RME
Sbjct: 19 AAMHPLDVVRTRFQVYDGRGSNLPTYKNTVNAIFTITRME 58

[Close]

BLAST of Carg16066 vs. ExPASy Swiss-Prot
Match: Q7XA87 (Folate transporter 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FOLT1 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.6e-10
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 8  AAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRME 48
          AA+H LDVVRTRFQ  D RGSSLPTYKNT +A+FTI R+E
Sbjct: 22 AAMHSLDVVRTRFQVNDGRGSSLPTYKNTAHAVFTIARLE 61

[Close]

BLAST of Carg16066 vs. ExPASy TrEMBL
Match: A0A6J1BVR2 (folate transporter 1, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005944 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.7e-10
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 8  AAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRME 48
          AAVHPLDVVRTRFQ  D RGS+LPTYKNTVNAIFTI RME
Sbjct: 19 AAVHPLDVVRTRFQVYDGRGSNLPTYKNTVNAIFTIARME 58

[Close]

BLAST of Carg16066 vs. ExPASy TrEMBL
Match: A0A6J1BYW2 (folate transporter 1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005944 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.7e-10
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 8  AAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRME 48
          AAVHPLDVVRTRFQ  D RGS+LPTYKNTVNAIFTI RME
Sbjct: 19 AAVHPLDVVRTRFQVYDGRGSNLPTYKNTVNAIFTIARME 58

[Close]

BLAST of Carg16066 vs. ExPASy TrEMBL
Match: A0A0A0KKJ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504580 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.0e-09
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 8  AAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRME 48
          AA+HPLDVVRTRFQ  D RGS+LPTYKNTVNAI+TI RME
Sbjct: 19 AAMHPLDVVRTRFQVYDGRGSNLPTYKNTVNAIYTITRME 58

[Close]

BLAST of Carg16066 vs. ExPASy TrEMBL
Match: A0A6J1GCK1 (folate transporter 1, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452956 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.2e-09
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 8  AAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRME 48
          A+VHPLDVVRTRFQ  D RGS+LPTYKNTVNAI TI RME
Sbjct: 19 ASVHPLDVVRTRFQVYDGRGSNLPTYKNTVNAILTIARME 58

[Close]

BLAST of Carg16066 vs. ExPASy TrEMBL
Match: A0A6J1GD94 (folate transporter 1, chloroplastic-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111452956 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.2e-09
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 8  AAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRME 48
          A+VHPLDVVRTRFQ  D RGS+LPTYKNTVNAI TI RME
Sbjct: 19 ASVHPLDVVRTRFQVYDGRGSNLPTYKNTVNAILTIARME 58

[Close]

BLAST of Carg16066 vs. TAIR 10
Match: AT5G66380.1 (folate transporter 1 )

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-11
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 8  AAVHPLDVVRTRFQGCDRRGSSLPTYKNTVNAIFTIGRME 48
          AA+H LDVVRTRFQ  D RGSSLPTYKNT +A+FTI R+E
Sbjct: 22 AAMHSLDVVRTRFQVNDGRGSSLPTYKNTAHAVFTIARLE 61

The following BLAST results are available for this feature:

BLAST of Carg16066 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026773.1	1.3e-30	100.00	Folate transporter 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_023518563.1	2.2e-17	95.83	folate transporter 1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022133344.1	9.8e-10	87.50	folate transporter 1, chloroplastic isoform X2 [Momordica charantia]	[more]
XP_022133343.1	9.8e-10	87.50	folate transporter 1, chloroplastic isoform X1 [Momordica charantia]	[more]
XP_038881970.1	3.7e-09	85.00	folate transporter 1, chloroplastic isoform X3 [Benincasa hispida]	[more]

BLAST of Carg16066 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XA87	4.6e-10	75.00	Folate transporter 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FOLT1 PE=...	[more]

BLAST of Carg16066 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BVR2	4.7e-10	87.50	folate transporter 1, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1BYW2	4.7e-10	87.50	folate transporter 1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN...	[more]
A0A0A0KKJ5	4.0e-09	82.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504580 PE=3 SV=1	[more]
A0A6J1GCK1	5.2e-09	82.50	folate transporter 1, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=366...	[more]
A0A6J1GD94	5.2e-09	82.50	folate transporter 1, chloroplastic-like isoform X3 OS=Cucurbita moschata OX=366...	[more]

BLAST of Carg16066 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66380.1	3.2e-11	75.00	folate transporter 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023395	Mitochondrial carrier domain superfamily	SUPERFAMILY	103506	Mitochondrial carrier	coord: 7..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16066-RA	Carg16066-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035350	FAD transmembrane transport
biological_process	GO:0015884	folic acid transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015230	FAD transmembrane transporter activity
molecular_function	GO:0008517	folic acid transmembrane transporter activity