Carg16065 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16065
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L7/L12
Location	Carg_Chr07: 2074550 .. 2077185 (-)
RNA-Seq Expression	Carg16065
Synteny	Carg16065

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACATTTGCGAAGTATTTCCTCTCATTTATCGAGGGTTCGCAGAATTTTCGCTCAAAACTCTGCTTCTGATTCTCCGTCTACTTGCAATTTAAATCTTCTAGGGTTGGAAAGATTGACATCGTCTTCATTGCTGAATCACCGGAATTACACTGTTGCTTCACCGGAATCAAAACCAGCCCCTTCAGAGAGAGTTACGGCCATTGTGGATGAGATCTCCGGTCTCACACTACTCGAGGTTGCAGACCTTACGGAGGTTCTTCGAGAAAAGTTGGATGTGAAGGATATGCCGGTAATGGCGGTGATGATGCCGGGGATGGGGTTTGGCGGCTTGCAAAACGCTGGCAAGAGTGGTTCTGGGGCGAAAGGCGGTGAAGAGAAGAAGGCGGAGAAGACGGCGTTTGATGTGAAGCTTGAAGCTTTTGATGCTGCGTCGAAGATCAAGGTCATTAAGGAAGTGCGAACGTTTACGAATTTGGGATTGAAGGAAGCTAAGGATTTGGTGGAGAAGGCGCCAACGCTTCTAAAGAAGGGGGTGACGAAAGAGGAAGCTGATACGATTATTGCCAAGATGAAGGAGGTTGGCGCCAAAGTTTCAATGGAGTGAGGTAATGTAGTCCTACTGTTTGCAAGTGTATTTTAGAACGAGTTACATGTTTCAAACTGTATGCCATGTGTATAGACCATGTTAGCCTATCTTAGTAATTGAGCATTCATCAAGACGTTATAATGAGTTTATCATGGCCATTGGGTATGTTTTGGGGTTGTAGTCAGGGTATGGATTCATGGATACGAAACCTGATAATCTTTAATTTTAGTTCCTATCCGTGGTAGCTTAGCAGAAGAATTTGATCCCAACTCCGGAGGACCTAATCTAGCTTGAGAGTTACAAGTATGATAATGAGTTTCTATAGAATGTTATATACTATGCCTGCGGTTCTCCTAACTTGAGGAGAGGTCCTTGATGAATTGGATTTGGGACGCAAAACTATACAGTTGAGGGTAGAAGATTATCCAGTTGTGTAAACTAGCCTGTAGCTACCAAATGGCTCGAGTGTCTGCTTTTTTTATCTTTCTTGGATAAGAAACACAATTCCTTAATCAATGAAGCAATAAGCATGCAAATGTGCCTATATAATATAACAGCTCAAGCCCACTGCTAGTAGATATTGTCCGCTTTAGCCAGTTAGCCGTTATAAGGAATGCTTTGTTTTCCTCTCCAACCGATGTGAGATCTCACAATCCATCCCCTTTGGGAGCCCAGCGTCCTCGCTGGCATACCGCCTGATGCCTGGCTCTTATACCATTTGTAATAGCCCTAGCCCACTGCTAGCAGATGTTGTCCGCTTTTGCTCGTTAGCTGTCAGCCTCATGATTTTAAAACGTGTCTGCTAGGGAGAGGTTTTCACACCTTTATAAGAAATGTTTTGTTCTCCTCTCCAACCAATTTGCGATCTGAGATGATTTGGAAAATGGGTTCTATAGTTTTTTCTGACATACTTGCTGTGCTTTTATTAACTCACCCTGAGCTAGAGAAATTCTAGGACTTTGAGGTACGGAAGTGTGTGCAGTTTGGAAGTGATCAGATTTATCCAGTCATGTAAGTGCAACCTAACCTGGAACTACACAATAGCCTGAGTATGTGCGTTTTTTTAAGGAACTAAAAAATAGATAAGAAACTTAAAGAGTTGATAATAGGTAGCAGATGAAGGTCCTTAGAATGCGATTCTTTGTTGAAATCTTAATTTTCTGTTGTTTGTTCATTTCATCCTCTTATGAAGATTTATGGCTGATGCCTATATGGTCCAATAAGTTTCTCTATCTTTTTTTTGGAGCAAAACAAATGTTAGTTGAGATAAATAAGATCATACAAAGTAGTGTTAAAAAAAAATCTTATTTCTATAATTTATATTCTAAAATATAAGTAATGTTAACAAAAAAAACCTTATCTAATAGTCATTGTAACATGAGGCAATGTGTTGATCTATTTTTTCCCTTCATAGTTTCATAAATGCCACAAAAGCTTTAGAACACGATGCTATGTGTAACAACTCAAGTCCACCGCTAGGAGATTGTCCACTTTAGCCCATTACGTAGCGCCGTTAGCCTCATGGTCTTAGAATGCATCTGCTAGGTAGAGGTTTCCACATTCTTATAAGAAATGCTTTGTTCCCCTCTCCAACCGATGTAGAATCTCACAATCCACCTCCCTCAAGAGCCAGCGTCCTAGCTGGCATGATAGTATGTTACCTCTCAAAAGCCTTATTTAATAGTCGTCGTAACTTTGAGCCTGTAGAGTGCCTATTGCCAATTCATGCAGCAGCATTACACTGTTTCAAGCTGCAGGGCCTATTCTATCTGTTACTCTGCATGCTTTATTTCTTATGATTTTAGCATGGCTACTTCATTCATCATCGTTCTTATTATAATCTGTGCAAGTCACTTAATTTTACTAAATTCCTCTGCAAATATGCAACAGTACAATTCAATAACATTGGGTAGAATCATGGTATCAGTAGTAGTTGGCATTACTATTTTGTAATTTCGTTTGTTTCTTTCACCATCAGGATACTGCGGAAAATACAAAGCTTTTATGGCACTTTTCAAGTCAGAACAGCAGTTGAAGATATATAA

mRNA sequence

ATGAGACATTTGCGAAGTATTTCCTCTCATTTATCGAGGGTTCGCAGAATTTTCGCTCAAAACTCTGCTTCTGATTCTCCGTCTACTTGCAATTTAAATCTTCTAGGGTTGGAAAGATTGACATCGTCTTCATTGCTGAATCACCGGAATTACACTGTTGCTTCACCGGAATCAAAACCAGCCCCTTCAGAGAGAGTTACGGCCATTGTGGATGAGATCTCCGGTCTCACACTACTCGAGGTTGCAGACCTTACGGAGGTTCTTCGAGAAAAGTTGGATGTGAAGGATATGCCGGTAATGGCGGTGATGATGCCGGGGATGGGGATACTGCGGAAAATACAAAGCTTTTATGGCACTTTTCAAGTCAGAACAGCAGTTGAAGATATATAA

Coding sequence (CDS)

ATGAGACATTTGCGAAGTATTTCCTCTCATTTATCGAGGGTTCGCAGAATTTTCGCTCAAAACTCTGCTTCTGATTCTCCGTCTACTTGCAATTTAAATCTTCTAGGGTTGGAAAGATTGACATCGTCTTCATTGCTGAATCACCGGAATTACACTGTTGCTTCACCGGAATCAAAACCAGCCCCTTCAGAGAGAGTTACGGCCATTGTGGATGAGATCTCCGGTCTCACACTACTCGAGGTTGCAGACCTTACGGAGGTTCTTCGAGAAAAGTTGGATGTGAAGGATATGCCGGTAATGGCGGTGATGATGCCGGGGATGGGGATACTGCGGAAAATACAAAGCTTTTATGGCACTTTTCAAGTCAGAACAGCAGTTGAAGATATATAA

Protein sequence

MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGILRKIQSFYGTFQVRTAVEDI

Homology

[Close]

BLAST of Carg16065 vs. NCBI nr
Match: KAG7026774.1 (hypothetical protein SDJN02_10780, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.4 bits (620), Expect = 1.1e-60
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP
Sbjct: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGILRKIQSFYGTF 120
           APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGILRKIQSFYGTF
Sbjct: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGILRKIQSFYGTF 120

Query: 121 QVRTAVEDI 130
           QVRTAVEDI
Sbjct: 121 QVRTAVEDI 129

[Close]

BLAST of Carg16065 vs. NCBI nr
Match: KAG6594805.1 (hypothetical protein SDJN03_11358, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.0 bits (515), Expect = 1.6e-48
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP
Sbjct: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG
Sbjct: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 108

[Close]

BLAST of Carg16065 vs. NCBI nr
Match: XP_023003672.1 (uncharacterized protein LOC111497194 [Cucurbita maxima])

HSP 1 Score: 200.7 bits (509), Expect = 7.8e-48
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MRHLRSISSHLSRVRR FAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYT+ASPESKP
Sbjct: 1   MRHLRSISSHLSRVRRTFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTIASPESKP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG
Sbjct: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 108

[Close]

BLAST of Carg16065 vs. NCBI nr
Match: XP_023518906.1 (uncharacterized protein LOC111782287 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.7 bits (504), Expect = 3.0e-47
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MRHLRSISSHLSRVRR FAQNSASDSPSTCNLNLLGLERLTS SLLNHRNYTVASPESKP
Sbjct: 1   MRHLRSISSHLSRVRRTFAQNSASDSPSTCNLNLLGLERLTSFSLLNHRNYTVASPESKP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG
Sbjct: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 108

[Close]

BLAST of Carg16065 vs. NCBI nr
Match: XP_022963245.1 (uncharacterized protein LOC111463515 [Cucurbita moschata])

HSP 1 Score: 193.7 bits (491), Expect = 9.6e-46
Identity = 104/108 (96.30%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MRHLRSISSHLS VRR FA NSASDSPSTCNLNLLGLERLTS SLLNHRNYTVASPESKP
Sbjct: 1   MRHLRSISSHLSWVRRTFAHNSASDSPSTCNLNLLGLERLTSFSLLNHRNYTVASPESKP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG
Sbjct: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 108

[Close]

BLAST of Carg16065 vs. ExPASy TrEMBL
Match: A0A6J1KN90 (uncharacterized protein LOC111497194 OS=Cucurbita maxima OX=3661 GN=LOC111497194 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.8e-48
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MRHLRSISSHLSRVRR FAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYT+ASPESKP
Sbjct: 1   MRHLRSISSHLSRVRRTFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTIASPESKP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG
Sbjct: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 108

[Close]

BLAST of Carg16065 vs. ExPASy TrEMBL
Match: A0A6J1HHF7 (uncharacterized protein LOC111463515 OS=Cucurbita moschata OX=3662 GN=LOC111463515 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.6e-46
Identity = 104/108 (96.30%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MRHLRSISSHLS VRR FA NSASDSPSTCNLNLLGLERLTS SLLNHRNYTVASPESKP
Sbjct: 1   MRHLRSISSHLSWVRRTFAHNSASDSPSTCNLNLLGLERLTSFSLLNHRNYTVASPESKP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG
Sbjct: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 108

[Close]

BLAST of Carg16065 vs. ExPASy TrEMBL
Match: A0A6J1BSG1 (uncharacterized protein LOC111005287 OS=Momordica charantia OX=3673 GN=LOC111005287 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.7e-36
Identity = 87/108 (80.56%), Postives = 93/108 (86.11%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MR+LR +S H SR+ R FAQ    DS ST +LNLLGL  L SSSLLNHRNYT ASPES+P
Sbjct: 1   MRYLRILSPHFSRICRTFAQTPCCDSSSTHSLNLLGLGSLASSSLLNHRNYTTASPESRP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           APSERV+AIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG
Sbjct: 61  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 108

[Close]

BLAST of Carg16065 vs. ExPASy TrEMBL
Match: A0A5A7SN88 (50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001680 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 6.3e-35
Identity = 83/108 (76.85%), Postives = 93/108 (86.11%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MR+LR  SSH SR+RR FAQN +S SPST ++NL GLE   SSS +NHRNYT ASPES+P
Sbjct: 1   MRNLRFFSSHFSRIRRTFAQNPSSVSPSTRHINLPGLETFASSSSVNHRNYTTASPESRP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           APSERV+AIVDEISGLTLLEVADLTEVLREKLDVK+MPVM +MMPG G
Sbjct: 61  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKEMPVMTIMMPGTG 108

[Close]

BLAST of Carg16065 vs. ExPASy TrEMBL
Match: A0A1S3B1Y6 (50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103485090 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 6.3e-35
Identity = 83/108 (76.85%), Postives = 93/108 (86.11%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MR+LR  SSH SR+RR FAQN +S SPST ++NL GLE   SSS +NHRNYT ASPES+P
Sbjct: 1   MRNLRFFSSHFSRIRRTFAQNPSSVSPSTRHINLPGLETFASSSSVNHRNYTTASPESRP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           APSERV+AIVDEISGLTLLEVADLTEVLREKLDVK+MPVM +MMPG G
Sbjct: 61  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKEMPVMTIMMPGTG 108

[Close]

BLAST of Carg16065 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 68.2 bits (165), Expect = 5.6e-12
Identity = 47/109 (43.12%), Postives = 66/109 (60.55%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MR+LR ISSH SRV +         S  T         R +S  L   ++ + +SP ++ 
Sbjct: 1   MRNLRIISSHFSRVLK---------STET---------RSSSVQLFTIQSRSYSSPATQ- 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGI 110
             SE V+ IV+E+S LTLLE  DLTE+LR+KL++ ++PVMA MMPGM +
Sbjct: 61  --SENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSL 88

[Close]

BLAST of Carg16065 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 50.1 bits (118), Expect = 1.6e-06
Identity = 23/52 (44.23%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 57  ESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           E +  P++RV  +VDEIS LTLLE+++L  ++ +K  + ++P +AVM PG G
Sbjct: 62  EHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAG 113

[Close]

BLAST of Carg16065 vs. TAIR 10
Match: AT1G70190.2 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 50.1 bits (118), Expect = 1.6e-06
Identity = 23/52 (44.23%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 57  ESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           E +  P++RV  +VDEIS LTLLE+++L  ++ +K  + ++P +AVM PG G
Sbjct: 62  EHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAG 113

The following BLAST results are available for this feature:

BLAST of Carg16065 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026774.1	1.1e-60	100.00	hypothetical protein SDJN02_10780, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6594805.1	1.6e-48	100.00	hypothetical protein SDJN03_11358, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023003672.1	7.8e-48	98.15	uncharacterized protein LOC111497194 [Cucurbita maxima]	[more]
XP_023518906.1	3.0e-47	98.15	uncharacterized protein LOC111782287 [Cucurbita pepo subsp. pepo]	[more]
XP_022963245.1	9.6e-46	96.30	uncharacterized protein LOC111463515 [Cucurbita moschata]	[more]

BLAST of Carg16065 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg16065 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KN90	3.8e-48	98.15	uncharacterized protein LOC111497194 OS=Cucurbita maxima OX=3661 GN=LOC111497194...	[more]
A0A6J1HHF7	4.6e-46	96.30	uncharacterized protein LOC111463515 OS=Cucurbita moschata OX=3662 GN=LOC1114635...	[more]
A0A6J1BSG1	5.7e-36	80.56	uncharacterized protein LOC111005287 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A5A7SN88	6.3e-35	76.85	50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3B1Y6	6.3e-35	76.85	50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103485090 PE=3 SV=1	[more]

BLAST of Carg16065 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36420.1	5.6e-12	43.12	Ribosomal protein L12 family protein	[more]
AT1G70190.1	1.6e-06	44.23	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]
AT1G70190.2	1.6e-06	44.23	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 66..105 e-value: 1.3E-11 score: 44.0
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 65..109 e-value: 1.8E-8 score: 36.2
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 66..107
None	No IPR available	PANTHER	PTHR45987:SF4	39S RIBOSOMAL PROTEIN L12, MITOCHONDRIAL	coord: 34..110
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 34..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16065-RA	Carg16065-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome