
Carg16056 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTGAGAGCTTTGAGTACCAGGAGATGTCCTCACAGGTACGAGTATCTCATGGAGGATCCCACCATTAGCCTGATGGAAGGGCGGCTGAAGAGGACAACCAGTGTACCAACCATAGTACTCGGTTCAGGGTCGAGAAATCCGACGTCTGCCGAGCCTGCACAAGCAAAACTGAAGCAGTCGAAGAAAGCTAGCAAAGGACATGCTCTTTTTAATTTCTTTGATATTCGTCGGAAGAGGAAGTCAACTGCCAAGCCTGAATTTGCCAGGTATCTGGAGTATGTGAAGGAGGGAGGCCTGTGGGATTTGAAAGCAAATGCTCCTGTAATCTACTATAAATGA ATGTTGAGAGCTTTGAGTACCAGGAGATGTCCTCACAGGTACGAGTATCTCATGGAGGATCCCACCATTAGCCTGATGGAAGGGCGGCTGAAGAGGACAACCAGTGTACCAACCATAGTACTCGGTTCAGGGTCGAGAAATCCGACGTCTGCCGAGCCTGCACAAGCAAAACTGAAGCAGTCGAAGAAAGCTAGCAAAGGACATGCTCTTTTTAATTTCTTTGATATTCGTCGGAAGAGGAAGTCAACTGCCAAGCCTGAATTTGCCAGGTATCTGGAGTATGTGAAGGAGGGAGGCCTGTGGGATTTGAAAGCAAATGCTCCTGTAATCTACTATAAATGA ATGTTGAGAGCTTTGAGTACCAGGAGATGTCCTCACAGGTACGAGTATCTCATGGAGGATCCCACCATTAGCCTGATGGAAGGGCGGCTGAAGAGGACAACCAGTGTACCAACCATAGTACTCGGTTCAGGGTCGAGAAATCCGACGTCTGCCGAGCCTGCACAAGCAAAACTGAAGCAGTCGAAGAAAGCTAGCAAAGGACATGCTCTTTTTAATTTCTTTGATATTCGTCGGAAGAGGAAGTCAACTGCCAAGCCTGAATTTGCCAGGTATCTGGAGTATGTGAAGGAGGGAGGCCTGTGGGATTTGAAAGCAAATGCTCCTGTAATCTACTATAAATGA MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNPTSAEPAQAKLKQSKKASKGHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK Homology
BLAST of Carg16056 vs. NCBI nr
Match: KAG6594817.1 (Auxilin-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 227.3 bits (578), Expect = 6.8e-56 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of Carg16056 vs. NCBI nr
Match: KAG7026782.1 (hypothetical protein SDJN02_10789, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 227.3 bits (578), Expect = 6.8e-56 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of Carg16056 vs. NCBI nr
Match: XP_023003965.1 (uncharacterized protein LOC111497412 [Cucurbita maxima]) HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50 Identity = 105/109 (96.33%), Postives = 105/109 (96.33%), Query Frame = 0
BLAST of Carg16056 vs. NCBI nr
Match: XP_011658493.1 (uncharacterized protein LOC105436031 [Cucumis sativus]) HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42 Identity = 93/118 (78.81%), Postives = 103/118 (87.29%), Query Frame = 0
BLAST of Carg16056 vs. NCBI nr
Match: XP_022132575.1 (uncharacterized protein LOC111005403 [Momordica charantia]) HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41 Identity = 93/117 (79.49%), Postives = 99/117 (84.62%), Query Frame = 0
BLAST of Carg16056 vs. ExPASy TrEMBL
Match: A0A6J1KT92 (uncharacterized protein LOC111497412 OS=Cucurbita maxima OX=3661 GN=LOC111497412 PE=4 SV=1) HSP 1 Score: 209.9 bits (533), Expect = 5.5e-51 Identity = 105/109 (96.33%), Postives = 105/109 (96.33%), Query Frame = 0
BLAST of Carg16056 vs. ExPASy TrEMBL
Match: A0A0A0KKF4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502830 PE=4 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42 Identity = 93/118 (78.81%), Postives = 103/118 (87.29%), Query Frame = 0
BLAST of Carg16056 vs. ExPASy TrEMBL
Match: A0A6J1BSU6 (uncharacterized protein LOC111005403 OS=Momordica charantia OX=3673 GN=LOC111005403 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 6.1e-42 Identity = 93/117 (79.49%), Postives = 99/117 (84.62%), Query Frame = 0
BLAST of Carg16056 vs. ExPASy TrEMBL
Match: A0A1S3B2K9 (uncharacterized protein LOC103485064 OS=Cucumis melo OX=3656 GN=LOC103485064 PE=4 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 6.7e-41 Identity = 90/118 (76.27%), Postives = 103/118 (87.29%), Query Frame = 0
BLAST of Carg16056 vs. ExPASy TrEMBL
Match: A0A6J1ILF9 (uncharacterized protein LOC111478516 OS=Cucurbita maxima OX=3661 GN=LOC111478516 PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39 Identity = 89/115 (77.39%), Postives = 96/115 (83.48%), Query Frame = 0
BLAST of Carg16056 vs. TAIR 10
Match: AT4G36500.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18210.1); Has 50 Blast hits to 50 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 101.7 bits (252), Expect = 4.0e-22 Identity = 58/120 (48.33%), Postives = 79/120 (65.83%), Query Frame = 0
BLAST of Carg16056 vs. TAIR 10
Match: AT2G18210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G36500.1); Has 50 Blast hits to 50 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 89.7 bits (221), Expect = 1.6e-18 Identity = 55/122 (45.08%), Postives = 74/122 (60.66%), Query Frame = 0
BLAST of Carg16056 vs. TAIR 10
Match: AT3G50900.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66490.1); Has 45 Blast hits to 45 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 89.7 bits (221), Expect = 1.6e-18 Identity = 57/125 (45.60%), Postives = 75/125 (60.00%), Query Frame = 0
BLAST of Carg16056 vs. TAIR 10
Match: AT5G66490.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 79.0 bits (193), Expect = 2.8e-15 Identity = 53/121 (43.80%), Postives = 68/121 (56.20%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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