Carg16056 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16056
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAuxilin-like protein 1 isoform X4
LocationCarg_Chr07: 2135541 .. 2135882 (-)
RNA-Seq ExpressionCarg16056
SyntenyCarg16056
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAGAGCTTTGAGTACCAGGAGATGTCCTCACAGGTACGAGTATCTCATGGAGGATCCCACCATTAGCCTGATGGAAGGGCGGCTGAAGAGGACAACCAGTGTACCAACCATAGTACTCGGTTCAGGGTCGAGAAATCCGACGTCTGCCGAGCCTGCACAAGCAAAACTGAAGCAGTCGAAGAAAGCTAGCAAAGGACATGCTCTTTTTAATTTCTTTGATATTCGTCGGAAGAGGAAGTCAACTGCCAAGCCTGAATTTGCCAGGTATCTGGAGTATGTGAAGGAGGGAGGCCTGTGGGATTTGAAAGCAAATGCTCCTGTAATCTACTATAAATGA

mRNA sequence

ATGTTGAGAGCTTTGAGTACCAGGAGATGTCCTCACAGGTACGAGTATCTCATGGAGGATCCCACCATTAGCCTGATGGAAGGGCGGCTGAAGAGGACAACCAGTGTACCAACCATAGTACTCGGTTCAGGGTCGAGAAATCCGACGTCTGCCGAGCCTGCACAAGCAAAACTGAAGCAGTCGAAGAAAGCTAGCAAAGGACATGCTCTTTTTAATTTCTTTGATATTCGTCGGAAGAGGAAGTCAACTGCCAAGCCTGAATTTGCCAGGTATCTGGAGTATGTGAAGGAGGGAGGCCTGTGGGATTTGAAAGCAAATGCTCCTGTAATCTACTATAAATGA

Coding sequence (CDS)

ATGTTGAGAGCTTTGAGTACCAGGAGATGTCCTCACAGGTACGAGTATCTCATGGAGGATCCCACCATTAGCCTGATGGAAGGGCGGCTGAAGAGGACAACCAGTGTACCAACCATAGTACTCGGTTCAGGGTCGAGAAATCCGACGTCTGCCGAGCCTGCACAAGCAAAACTGAAGCAGTCGAAGAAAGCTAGCAAAGGACATGCTCTTTTTAATTTCTTTGATATTCGTCGGAAGAGGAAGTCAACTGCCAAGCCTGAATTTGCCAGGTATCTGGAGTATGTGAAGGAGGGAGGCCTGTGGGATTTGAAAGCAAATGCTCCTGTAATCTACTATAAATGA

Protein sequence

MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNPTSAEPAQAKLKQSKKASKGHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK
Homology
BLAST of Carg16056 vs. NCBI nr
Match: KAG6594817.1 (Auxilin-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 227.3 bits (578), Expect = 6.8e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1    MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNPTSAEPAQAKLKQ 60
            MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNPTSAEPAQAKLKQ
Sbjct: 1452 MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNPTSAEPAQAKLKQ 1511

Query: 61   SKKASKGHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 114
            SKKASKGHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK
Sbjct: 1512 SKKASKGHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 1564

BLAST of Carg16056 vs. NCBI nr
Match: KAG7026782.1 (hypothetical protein SDJN02_10789, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 227.3 bits (578), Expect = 6.8e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNPTSAEPAQAKLKQ 60
           MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNPTSAEPAQAKLKQ
Sbjct: 1   MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNPTSAEPAQAKLKQ 60

Query: 61  SKKASKGHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 114
           SKKASKGHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK
Sbjct: 61  SKKASKGHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 113

BLAST of Carg16056 vs. NCBI nr
Match: XP_023003965.1 (uncharacterized protein LOC111497412 [Cucurbita maxima])

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 105/109 (96.33%), Postives = 105/109 (96.33%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNPTSAEPAQAKLKQ 60
           MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRT SVPTIVLGSGSRNPTSA PAQAKLKQ
Sbjct: 1   MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTASVPTIVLGSGSRNPTSAVPAQAKLKQ 60

Query: 61  SKKASKGHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPV 110
           SKKASKGHALFNFFD  RKRKSTAKPEFARYLEYVKEGGLWDLKANAPV
Sbjct: 61  SKKASKGHALFNFFDFGRKRKSTAKPEFARYLEYVKEGGLWDLKANAPV 109

BLAST of Carg16056 vs. NCBI nr
Match: XP_011658493.1 (uncharacterized protein LOC105436031 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42
Identity = 93/118 (78.81%), Postives = 103/118 (87.29%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNP----TSAEPAQA 60
           MLRALSTRRCPHRYE+  EDPT+SL+EGRLKR TS+PTIVLGSGSR P    T  E AQA
Sbjct: 1   MLRALSTRRCPHRYEFFAEDPTLSLLEGRLKRATSLPTIVLGSGSRKPAFDITFPEFAQA 60

Query: 61  KLKQSKKASK-GHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 114
           K KQSKKA+K GH +F+FFD RRKRKSTA+PEFARYLEY+KEGGLWDLKANAPVIY+K
Sbjct: 61  KQKQSKKANKGGHPIFSFFDFRRKRKSTARPEFARYLEYLKEGGLWDLKANAPVIYFK 118

BLAST of Carg16056 vs. NCBI nr
Match: XP_022132575.1 (uncharacterized protein LOC111005403 [Momordica charantia])

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41
Identity = 93/117 (79.49%), Postives = 99/117 (84.62%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNP----TSAEPAQA 60
           MLRALSTRRCPHRYE L EDPTISL+EGRLKR TS+PT VLGS SR        AE AQ 
Sbjct: 1   MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV 60

Query: 61  KLKQSKKASKGHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 114
           K +QSKKAS+GH LF+FFD RRKRK+TAKPEFARYLEYVKEGGLWDLKANAPVIYYK
Sbjct: 61  KHRQSKKASRGHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 117

BLAST of Carg16056 vs. ExPASy TrEMBL
Match: A0A6J1KT92 (uncharacterized protein LOC111497412 OS=Cucurbita maxima OX=3661 GN=LOC111497412 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.5e-51
Identity = 105/109 (96.33%), Postives = 105/109 (96.33%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNPTSAEPAQAKLKQ 60
           MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRT SVPTIVLGSGSRNPTSA PAQAKLKQ
Sbjct: 1   MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTASVPTIVLGSGSRNPTSAVPAQAKLKQ 60

Query: 61  SKKASKGHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPV 110
           SKKASKGHALFNFFD  RKRKSTAKPEFARYLEYVKEGGLWDLKANAPV
Sbjct: 61  SKKASKGHALFNFFDFGRKRKSTAKPEFARYLEYVKEGGLWDLKANAPV 109

BLAST of Carg16056 vs. ExPASy TrEMBL
Match: A0A0A0KKF4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502830 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 93/118 (78.81%), Postives = 103/118 (87.29%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNP----TSAEPAQA 60
           MLRALSTRRCPHRYE+  EDPT+SL+EGRLKR TS+PTIVLGSGSR P    T  E AQA
Sbjct: 1   MLRALSTRRCPHRYEFFAEDPTLSLLEGRLKRATSLPTIVLGSGSRKPAFDITFPEFAQA 60

Query: 61  KLKQSKKASK-GHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 114
           K KQSKKA+K GH +F+FFD RRKRKSTA+PEFARYLEY+KEGGLWDLKANAPVIY+K
Sbjct: 61  KQKQSKKANKGGHPIFSFFDFRRKRKSTARPEFARYLEYLKEGGLWDLKANAPVIYFK 118

BLAST of Carg16056 vs. ExPASy TrEMBL
Match: A0A6J1BSU6 (uncharacterized protein LOC111005403 OS=Momordica charantia OX=3673 GN=LOC111005403 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.1e-42
Identity = 93/117 (79.49%), Postives = 99/117 (84.62%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNP----TSAEPAQA 60
           MLRALSTRRCPHRYE L EDPTISL+EGRLKR TS+PT VLGS SR        AE AQ 
Sbjct: 1   MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV 60

Query: 61  KLKQSKKASKGHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 114
           K +QSKKAS+GH LF+FFD RRKRK+TAKPEFARYLEYVKEGGLWDLKANAPVIYYK
Sbjct: 61  KHRQSKKASRGHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 117

BLAST of Carg16056 vs. ExPASy TrEMBL
Match: A0A1S3B2K9 (uncharacterized protein LOC103485064 OS=Cucumis melo OX=3656 GN=LOC103485064 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.7e-41
Identity = 90/118 (76.27%), Postives = 103/118 (87.29%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNP----TSAEPAQA 60
           MLRALSTRRCPHRY++L EDPTISL+EG+L+R TS+PTIVLGSGSR      T  E AQA
Sbjct: 1   MLRALSTRRCPHRYKFLAEDPTISLLEGKLRRATSLPTIVLGSGSRKSAFDITVPEFAQA 60

Query: 61  KLKQSKKASK-GHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 114
           K KQSK+A+K GH +F+FFD RRKRKSTA+PEFARYLEY+KEGGLWDLKANAPVIY+K
Sbjct: 61  KQKQSKRANKGGHPIFSFFDFRRKRKSTARPEFARYLEYLKEGGLWDLKANAPVIYFK 118

BLAST of Carg16056 vs. ExPASy TrEMBL
Match: A0A6J1ILF9 (uncharacterized protein LOC111478516 OS=Cucurbita maxima OX=3661 GN=LOC111478516 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 89/115 (77.39%), Postives = 96/115 (83.48%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNPTSAEPAQAKLKQ 60
           MLRALSTRRCPHRYE L EDPTISL+E +LKR TS+PT VLGSGS  P S   AQ K KQ
Sbjct: 1   MLRALSTRRCPHRYERLGEDPTISLLEVKLKRATSLPTRVLGSGSVKPISETIAQVKQKQ 60

Query: 61  SKKASK--GHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 114
           SKK +   GH LF+FFD RRKRKSTAKPEFARY+EYVKEGGLWDLKANAPVIY+K
Sbjct: 61  SKKGNNKGGHPLFSFFDFRRKRKSTAKPEFARYVEYVKEGGLWDLKANAPVIYFK 115

BLAST of Carg16056 vs. TAIR 10
Match: AT4G36500.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18210.1); Has 50 Blast hits to 50 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 101.7 bits (252), Expect = 4.0e-22
Identity = 58/120 (48.33%), Postives = 79/120 (65.83%), Query Frame = 0

Query: 1   MLRALSTRRCPHR--YEYLMEDPTISLMEGRLKRTTSV----PTIVLGSGSRNPTSAEPA 60
           MLR+LSTR    R  YE + +D T SL+  +L+R+TSV    P+I LG+G       E  
Sbjct: 3   MLRSLSTRTRSRRGGYERVSDDSTFSLLGAKLRRSTSVPYYAPSIKLGAGGVPTILEELP 62

Query: 61  QAKLKQSKKASK-GHALFNFFDIRRKRKSTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 114
           + K K+ K   K  H +F+ F  ++K+ +T KPEF+RYLEY+KEGG+WD +ANAPVIYYK
Sbjct: 63  RQKSKKVKPTGKFSHPIFSLFYGKKKKSTTTKPEFSRYLEYLKEGGMWDARANAPVIYYK 122

BLAST of Carg16056 vs. TAIR 10
Match: AT2G18210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G36500.1); Has 50 Blast hits to 50 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-18
Identity = 55/122 (45.08%), Postives = 74/122 (60.66%), Query Frame = 0

Query: 1   MLRALSTRRCPHR--YEYLMEDPTISLMEGRLKRTTSV----PTIVLGSGSRNPTSAEPA 60
           MLR LSTR    R  YE + +D T SL+  +L+R+TSV    P+I LG          P 
Sbjct: 3   MLRNLSTRTRSRRGGYERVSDDSTFSLLGAKLRRSTSVPYYAPSIRLGGDFPVILEKLPR 62

Query: 61  QAKLKQSKKASKGHALFNFFDIRR---KRKSTAKPEFARYLEYVKEGGLWDLKANAPVIY 114
           Q   K    +   H +F+ FD  R   K+K+TAKPEF+RY EY+KE G+WDL++N+PVIY
Sbjct: 63  QKPTKTVVTSKLSHPIFSLFDGYRRHNKKKATAKPEFSRYHEYLKESGMWDLRSNSPVIY 122

BLAST of Carg16056 vs. TAIR 10
Match: AT3G50900.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66490.1); Has 45 Blast hits to 45 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-18
Identity = 57/125 (45.60%), Postives = 75/125 (60.00%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYLMEDPTISLMEGRLKRTTSVPTIVLGSGSRNPTSAEPAQAKLKQ 60
           M RA+STR+    YE L ++      E RLKR +SVP  V G  SRNP      + K   
Sbjct: 1   MFRAMSTRKIHGGYEKLGDE------EARLKRVSSVPASVYGH-SRNPVQ----EVKKTP 60

Query: 61  SKKASKG--HALFNFFDIRRKRK----------STAKPEFARYLEYVKEGGLWDLKANAP 114
           + K + G  H LF+FFD+  +RK          +TAKPEFARY+EYV+EGG+WD  +NAP
Sbjct: 61  TAKPTGGSVHPLFSFFDVHFQRKKKNTAKKKSLATAKPEFARYMEYVREGGVWDPSSNAP 114

BLAST of Carg16056 vs. TAIR 10
Match: AT5G66490.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 2.8e-15
Identity = 53/121 (43.80%), Postives = 68/121 (56.20%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYEYL--MEDPTISLMEGRLKRTTSVPTIVLGSGSRNPTSAEPAQAKL 60
           M+RALSTR+    Y+ L   E+    L+E    +  SVPT        NP    P   K 
Sbjct: 1   MIRALSTRKVRGSYKKLGDEEEAGAGLLE---VKPESVPT--------NPHGQSPKVNKP 60

Query: 61  KQSKKASKGHALFNFFDIRRKRK------STAKPEFARYLEYVKEGGLWDLKANAPVIYY 114
            +  + S  H LF+FF++  KRK      +TAKPEFARYLEYVKEGG+WD  +N P IYY
Sbjct: 61  VEKTRGS-AHPLFSFFEMSLKRKKKKKSTTTAKPEFARYLEYVKEGGVWDNTSNGPAIYY 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6594817.16.8e-56100.00Auxilin-like protein 1, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7026782.16.8e-56100.00hypothetical protein SDJN02_10789, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023003965.11.1e-5096.33uncharacterized protein LOC111497412 [Cucurbita maxima][more]
XP_011658493.12.5e-4278.81uncharacterized protein LOC105436031 [Cucumis sativus][more]
XP_022132575.11.3e-4179.49uncharacterized protein LOC111005403 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KT925.5e-5196.33uncharacterized protein LOC111497412 OS=Cucurbita maxima OX=3661 GN=LOC111497412... [more]
A0A0A0KKF41.2e-4278.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502830 PE=4 SV=1[more]
A0A6J1BSU66.1e-4279.49uncharacterized protein LOC111005403 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A1S3B2K96.7e-4176.27uncharacterized protein LOC103485064 OS=Cucumis melo OX=3656 GN=LOC103485064 PE=... [more]
A0A6J1ILF91.6e-3977.39uncharacterized protein LOC111478516 OS=Cucurbita maxima OX=3661 GN=LOC111478516... [more]
Match NameE-valueIdentityDescription
AT4G36500.14.0e-2248.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G18210.11.6e-1845.08unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G50900.11.6e-1845.60unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G66490.12.8e-1543.80unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35291PROTEIN SHROOM-LIKEcoord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16056-RACarg16056-RAmRNA