Carg16048 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16048
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	GATA transcription factor 18-like
Location	Carg_Chr07: 2177816 .. 2178596 (-)
RNA-Seq Expression	Carg16048
Synteny	Carg16048

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCAACGCTGTGGAAGCTACCAATGCTACTCCGCCGGAGAGTGTTCTTGTGAGGCTGCGTTTTACGGGCAGCAGACCACCTTCTTCTCCATGCCTGCTTACAACAATTACTATGAATCTCAACATTATTCTTTCCAATCCTCTTCTCCGGTTGTCGATTGTACGCTCTCTCTCGGTACCCCCTCCACTCGTATGACGGAGTTTGATGAGAAACGCCGCGAGGAGCAGCAATCCGCTTCTAATTTCGCCTGGGATTTATCTCGCACCAAACATCCTCCCTCCTCCAAAAGTGGCCGCCGTGGTGGTGATAAATCCAGCTCCAATGCTGACCAAATGTTCGCTCGCCACTGCGCCAATTGCGACACCACTACCACCCCCCTCTGGCGCAACGGCCCTAGTGGCCCGAAGGTAACCAAACCAATCCAATCTAATCTAATCCAATCCAATCCAATCCAATCCTCTCCTCTGTTATTCTCTATCTAACCATTCAATTAATATATGGATTTGATGGGTTATTAATAATTTGGCACAGTCCTTATGCAATGCGTGTGGGATTAGATACAAAAAGGAAGAGAGAAAAGCAGCGAGTTCAGGGCAGCAGGCGAGTTCGATGTACAGAAACGAGACAAGCTCGTGGCTTCAGCACCACTCGCACACCCAAAGAACACCCAGATTCGCTCATGGAATTGGGAATGATATGAATCCGAGCGTGGCCATTCTGTCATGGAGCCTCAACGACACAGAACAACCCCAGCTTTACTACGACTTCACAAGTTGA

mRNA sequence

ATGATGCAACGCTGTGGAAGCTACCAATGCTACTCCGCCGGAGAGTGTTCTTGTGAGGCTGCGTTTTACGGGCAGCAGACCACCTTCTTCTCCATGCCTGCTTACAACAATTACTATGAATCTCAACATTATTCTTTCCAATCCTCTTCTCCGGTTGTCGATTGTACGCTCTCTCTCGGTACCCCCTCCACTCGTATGACGGAGTTTGATGAGAAACGCCGCGAGGAGCAGCAATCCGCTTCTAATTTCGCCTGGGATTTATCTCGCACCAAACATCCTCCCTCCTCCAAAAGTGGCCGCCGTGGTGGTGATAAATCCAGCTCCAATGCTGACCAAATGTTCGCTCGCCACTGCGCCAATTGCGACACCACTACCACCCCCCTCTGGCGCAACGGCCCTAGTGGCCCGAAGTCCTTATGCAATGCGTGTGGGATTAGATACAAAAAGGAAGAGAGAAAAGCAGCGAGTTCAGGGCAGCAGGCGAGTTCGATGTACAGAAACGAGACAAGCTCGTGGCTTCAGCACCACTCGCACACCCAAAGAACACCCAGATTCGCTCATGGAATTGGGAATGATATGAATCCGAGCGTGGCCATTCTGTCATGGAGCCTCAACGACACAGAACAACCCCAGCTTTACTACGACTTCACAAGTTGA

Coding sequence (CDS)

ATGATGCAACGCTGTGGAAGCTACCAATGCTACTCCGCCGGAGAGTGTTCTTGTGAGGCTGCGTTTTACGGGCAGCAGACCACCTTCTTCTCCATGCCTGCTTACAACAATTACTATGAATCTCAACATTATTCTTTCCAATCCTCTTCTCCGGTTGTCGATTGTACGCTCTCTCTCGGTACCCCCTCCACTCGTATGACGGAGTTTGATGAGAAACGCCGCGAGGAGCAGCAATCCGCTTCTAATTTCGCCTGGGATTTATCTCGCACCAAACATCCTCCCTCCTCCAAAAGTGGCCGCCGTGGTGGTGATAAATCCAGCTCCAATGCTGACCAAATGTTCGCTCGCCACTGCGCCAATTGCGACACCACTACCACCCCCCTCTGGCGCAACGGCCCTAGTGGCCCGAAGTCCTTATGCAATGCGTGTGGGATTAGATACAAAAAGGAAGAGAGAAAAGCAGCGAGTTCAGGGCAGCAGGCGAGTTCGATGTACAGAAACGAGACAAGCTCGTGGCTTCAGCACCACTCGCACACCCAAAGAACACCCAGATTCGCTCATGGAATTGGGAATGATATGAATCCGAGCGTGGCCATTCTGTCATGGAGCCTCAACGACACAGAACAACCCCAGCTTTACTACGACTTCACAAGTTGA

Protein sequence

MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLGTPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRRGGDKSSSNADQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSHTQRTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS

Homology

[Close]

BLAST of Carg16048 vs. NCBI nr
Match: XP_022962877.1 (GATA transcription factor 18-like [Cucurbita moschata] >KAG6594828.1 GATA transcription factor 18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026790.1 GATA transcription factor 18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 451.4 bits (1160), Expect = 4.3e-123
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG 60
           MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG
Sbjct: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG 60

Query: 61  TPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRRGGDKSSSNADQMFARHCAN 120
           TPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRRGGDKSSSNADQMFARHCAN
Sbjct: 61  TPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRRGGDKSSSNADQMFARHCAN 120

Query: 121 CDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSHTQ 180
           CDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSHTQ
Sbjct: 121 CDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSHTQ 180

Query: 181 RTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 219
           RTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS
Sbjct: 181 RTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 218

[Close]

BLAST of Carg16048 vs. NCBI nr
Match: XP_023003838.1 (GATA transcription factor 18-like [Cucurbita maxima])

HSP 1 Score: 449.9 bits (1156), Expect = 1.3e-122
Identity = 217/218 (99.54%), Postives = 217/218 (99.54%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG 60
           MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG
Sbjct: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG 60

Query: 61  TPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRRGGDKSSSNADQMFARHCAN 120
           TPSTRMTEFDEKRREEQQSASNFAWD SRTKHPPSSKSGRRGGDKSSSNADQMFARHCAN
Sbjct: 61  TPSTRMTEFDEKRREEQQSASNFAWDFSRTKHPPSSKSGRRGGDKSSSNADQMFARHCAN 120

Query: 121 CDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSHTQ 180
           CDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSHTQ
Sbjct: 121 CDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSHTQ 180

Query: 181 RTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 219
           RTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS
Sbjct: 181 RTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 218

[Close]

BLAST of Carg16048 vs. NCBI nr
Match: XP_023518599.1 (GATA transcription factor 18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 439.9 bits (1130), Expect = 1.3e-119
Identity = 214/219 (97.72%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAY-NNYYESQHYSFQSSSPVVDCTLSL 60
           MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAY NNYYESQHYSFQSSSPVVDCTLSL
Sbjct: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNNYYESQHYSFQSSSPVVDCTLSL 60

Query: 61  GTPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRRGGDKSSSNADQMFARHCA 120
           GTPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRRGGDKSSSNADQM ARHCA
Sbjct: 61  GTPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRRGGDKSSSNADQMLARHCA 120

Query: 121 NCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSHT 180
           NCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSH+
Sbjct: 121 NCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSHS 180

Query: 181 QRTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 219
           QRTPRF HGIGNDMNP VAILSWSLNDTEQPQLYYDFTS
Sbjct: 181 QRTPRFTHGIGNDMNPGVAILSWSLNDTEQPQLYYDFTS 219

[Close]

BLAST of Carg16048 vs. NCBI nr
Match: XP_022978554.1 (GATA transcription factor 18-like [Cucurbita maxima])

HSP 1 Score: 384.8 bits (987), Expect = 4.9e-103
Identity = 189/222 (85.14%), Postives = 201/222 (90.54%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG 60
           MMQRCGSYQCYSAGECSC  AFYGQQ ++FS PAYNNYYES+HYSF SSSP VDCTLSLG
Sbjct: 1   MMQRCGSYQCYSAGECSC-GAFYGQQGSYFSTPAYNNYYESEHYSFDSSSP-VDCTLSLG 60

Query: 61  TPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRR----GGDKSSSNADQMFAR 120
           TPSTRMTE+DEKRREEQ SASNFAWDLSRTKH  SSK+ RR    GGDKS +N DQMF+R
Sbjct: 61  TPSTRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMFSR 120

Query: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHH 180
           HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQA+SMY+NE SSWLQHH
Sbjct: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHH 180

Query: 181 SHTQRTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 219
           SH+Q+TPRF HGI ND+NP VA LSWSLNDTEQPQLYYDFTS
Sbjct: 181 SHSQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 220

[Close]

BLAST of Carg16048 vs. NCBI nr
Match: XP_022949779.1 (GATA transcription factor 18-like [Cucurbita moschata] >XP_023544803.1 GATA transcription factor 18-like [Cucurbita pepo subsp. pepo] >KAG7034143.1 GATA transcription factor 18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 382.5 bits (981), Expect = 2.5e-102
Identity = 188/222 (84.68%), Postives = 200/222 (90.09%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG 60
           MMQRCGSYQCYSAGECSC  AFY QQ ++FS PAYNNYYES+HYSF SSSP VDCTLSLG
Sbjct: 1   MMQRCGSYQCYSAGECSC-GAFYAQQGSYFSTPAYNNYYESEHYSFDSSSP-VDCTLSLG 60

Query: 61  TPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRR----GGDKSSSNADQMFAR 120
           TPSTRMTE+DEKRREEQ SASNFAWDLSRTKH  SSK+ RR    GGDKS +N DQMF+R
Sbjct: 61  TPSTRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMFSR 120

Query: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHH 180
           HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQA+SMY+NE SSWLQHH
Sbjct: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHH 180

Query: 181 SHTQRTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 219
           SH+Q+TPRF HGI ND+NP VA LSWSLNDTEQPQLYYDFTS
Sbjct: 181 SHSQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 220

[Close]

BLAST of Carg16048 vs. ExPASy Swiss-Prot
Match: Q8LC79 (GATA transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=GATA18 PE=1 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 4.0e-31
Identity = 103/280 (36.79%), Postives = 130/280 (46.43%), Query Frame = 0


Query: 5   CGSYQCYSAGEC--SCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLGTP 64
           CG +  +S   C  +   +  G  +  FSM      +E     +  SS +VDCTLSLGTP
Sbjct: 18  CGMFHHHSQSCCYNNNNNSNAGSYSMVFSM-QNGGVFEQNGEDYHHSSSLVDCTLSLGTP 77

Query: 65  STRMTEFDEKRREEQQSA-----SNFAWDLSRTKH------------------PPSSKSG 124
           STR+ E DEKRR    S      SNF WDL  TK+                  P    SG
Sbjct: 78  STRLCEEDEKRRRSTSSGASSCISNF-WDLIHTKNNNSKTAPYNNVPSFSANKPSRGCSG 137

Query: 125 RRGGDKSSSNADQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERK-AASSG 184
             GG       D + AR CANCDTT+TPLWRNGP GPKSLCNACGIR+KKEER+  A++G
Sbjct: 138 GGGGGGGGGGGDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAATG 197

Query: 185 ------------------------QQASSMYRNETSSWLQHHSHTQRTP----------- 218
                                     A++   N  + W  HHS TQR P           
Sbjct: 198 NTVVGAAPVQTDQYGHHNSGYNNYHAATNNNNNNGTPWAHHHS-TQRVPCNYPANEIRFM 257

[Close]

BLAST of Carg16048 vs. ExPASy Swiss-Prot
Match: Q6QPM2 (GATA transcription factor 19 OS=Arabidopsis thaliana OX=3702 GN=GATA19 PE=1 SV=2)

HSP 1 Score: 122.5 bits (306), Expect = 6.0e-27
Identity = 81/220 (36.82%), Postives = 112/220 (50.91%), Query Frame = 0


Query: 35  YNNYYESQHYSFQSSSPV--VDCTLSLGTPSTRMTEFDEKRREEQQSASNFAWDLSRTKH 94
           ++ ++  ++     SSP   VDCTLSLGTPSTR+   D++RR    ++    WD      
Sbjct: 3   FSMFFSPENDVSHHSSPYASVDCTLSLGTPSTRLCNEDDERRFSSHTSDTIGWDFLN--- 62

Query: 95  PPSSKSGRRGGDKSSSNADQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEER 154
              SK G  GG         + AR CANCDTT+TPLWRNGP GPKSLCNACGIR+KKEER
Sbjct: 63  --GSKKGGGGG------GHNLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 122

Query: 155 KAASS------------------GQQASSMYRNETSSWLQ----HHSH-TQRTPRFAHG- 214
           +A+++                   Q +++ Y N  + +      HH H TQR P ++   
Sbjct: 123 RASTARNSTSGGGSTAAGVPTLDHQASANYYYNNNNQYASSSPWHHQHNTQRVPYYSPAN 182

Query: 215 -----------IGNDMNPSVAILSWSLNDTEQPQLYYDFT 218
                      + +D+      LSW LN  ++  L +DFT
Sbjct: 183 NEYSYVDDVRVVDHDVTTD-PFLSWRLNVADRTGLVHDFT 210

[Close]

BLAST of Carg16048 vs. ExPASy Swiss-Prot
Match: Q9ZPX0 (GATA transcription factor 20 OS=Arabidopsis thaliana OX=3702 GN=GATA20 PE=2 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 9.9e-22
Identity = 68/164 (41.46%), Postives = 91/164 (55.49%), Query Frame = 0


Query: 37  NYYESQHYSFQSSSPVVDCTLSLGTPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSS 96
           N++    Y+  SSS  VDCTLSLGTPSTR+   D+  R    +++N + D         +
Sbjct: 22  NHHNYDPYNNFSSSTSVDCTLSLGTPSTRL---DDHHRFSSANSNNISGDFYIHGGNAKT 81

Query: 97  KSGRRGGDKSSSNADQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKA-- 156
            S ++GG   S        R CA+CDTT+TPLWRNGP GPKSLCNACGIR+KKEER+A  
Sbjct: 82  SSYKKGGVAHS------LPRRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEERRATA 141

Query: 157 -----ASSGQQASSM-----YRNETSSWLQHHSH-TQRTPRFAH 188
                +  G  A+ +     Y    + +  HH H    +P +AH
Sbjct: 142 RNLTISGGGSSAAEVPVENSYNGGGNYYSHHHHHYASSSPSWAH 176

[Close]

BLAST of Carg16048 vs. ExPASy Swiss-Prot
Match: Q6L5E5 (GATA transcription factor 15 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA15 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-18
Identity = 64/155 (41.29%), Postives = 83/155 (53.55%), Query Frame = 0


Query: 19  EAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLGTPSTRMTE---------- 78
           E+A Y   +T  + P+  +          SS+  VDCTLSLGTPS+R  E          
Sbjct: 49  ESAAYDDHSTVTTSPSSPS---------SSSTGSVDCTLSLGTPSSRRAEPVAAAAPAAN 108

Query: 79  --FDEKRREEQQSASNFAWDLSRTKHPPSSKSGR--RGGDKSSSNA--DQMFARHCANCD 138
                       SA+  +WD +   +    + GR   G  K ++ A  D +  R CANC 
Sbjct: 109 HGAPVPAHYPSLSAATVSWDATAESY-YCGQQGRPATGAAKCAAGAGHDALLDRRCANCG 168

Query: 139 TTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASS 158
           T +TPLWRNGP GPKSLCNACGIRYKKEER+AA++
Sbjct: 169 TASTPLWRNGPRGPKSLCNACGIRYKKEERRAAAT 193

[Close]

BLAST of Carg16048 vs. ExPASy Swiss-Prot
Match: B8AX51 (GATA transcription factor 15 OS=Oryza sativa subsp. indica OX=39946 GN=GATA15 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.9e-18
Identity = 76/215 (35.35%), Postives = 102/215 (47.44%), Query Frame = 0


Query: 19  EAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLGTPSTRMTE---------- 78
           E+A Y   +T  + P+  +          SS+  VDCTLSLGTPS+R  E          
Sbjct: 49  ESAAYDDHSTVTTSPSSPS---------SSSTGSVDCTLSLGTPSSRRAEPVAAAAPAAN 108

Query: 79  --FDEKRREEQQSASNFAWDLSRTKHPPSSKSGR--RGGDKSSSNA--DQMFARHCANCD 138
                       SA+  +WD +   +    + GR   G  K ++ A  D +  R CANC 
Sbjct: 109 HGAPVPAHYPSLSAATVSWDATAESY-YCGQQGRPATGAAKCAAGAGHDALLDRRCANCG 168

Query: 139 TTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASS----------GQQASSMYRNETSSW 198
           T +TPLWRNGP GPKSLCNACGIRYKKEER+AA++          G   +   R  T++ 
Sbjct: 169 TASTPLWRNGPRGPKSLCNACGIRYKKEERRAAATTTTADGAAGCGFITAQRGRGSTAAK 228

Query: 199 LQHHSHT--QRTPRFAHGIGNDMNPSVAILSWSLN 206
                 T  + T  +  G G     + A L+W LN
Sbjct: 229 AAPAVTTCGEETSPYVVGGGGGEVANAAYLAWRLN 253

[Close]

BLAST of Carg16048 vs. ExPASy TrEMBL
Match: A0A6J1HDS2 (GATA transcription factor 18-like OS=Cucurbita moschata OX=3662 GN=LOC111463241 PE=3 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 2.1e-123
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG 60
           MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG
Sbjct: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG 60

Query: 61  TPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRRGGDKSSSNADQMFARHCAN 120
           TPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRRGGDKSSSNADQMFARHCAN
Sbjct: 61  TPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRRGGDKSSSNADQMFARHCAN 120

Query: 121 CDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSHTQ 180
           CDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSHTQ
Sbjct: 121 CDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSHTQ 180

Query: 181 RTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 219
           RTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS
Sbjct: 181 RTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 218

[Close]

BLAST of Carg16048 vs. ExPASy TrEMBL
Match: A0A6J1KXS3 (GATA transcription factor 18-like OS=Cucurbita maxima OX=3661 GN=LOC111497301 PE=3 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 6.1e-123
Identity = 217/218 (99.54%), Postives = 217/218 (99.54%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG 60
           MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG
Sbjct: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG 60

Query: 61  TPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRRGGDKSSSNADQMFARHCAN 120
           TPSTRMTEFDEKRREEQQSASNFAWD SRTKHPPSSKSGRRGGDKSSSNADQMFARHCAN
Sbjct: 61  TPSTRMTEFDEKRREEQQSASNFAWDFSRTKHPPSSKSGRRGGDKSSSNADQMFARHCAN 120

Query: 121 CDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSHTQ 180
           CDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSHTQ
Sbjct: 121 CDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSHTQ 180

Query: 181 RTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 219
           RTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS
Sbjct: 181 RTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 218

[Close]

BLAST of Carg16048 vs. ExPASy TrEMBL
Match: A0A6J1IUC2 (GATA transcription factor 18-like OS=Cucurbita maxima OX=3661 GN=LOC111478501 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.4e-103
Identity = 189/222 (85.14%), Postives = 201/222 (90.54%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG 60
           MMQRCGSYQCYSAGECSC  AFYGQQ ++FS PAYNNYYES+HYSF SSSP VDCTLSLG
Sbjct: 1   MMQRCGSYQCYSAGECSC-GAFYGQQGSYFSTPAYNNYYESEHYSFDSSSP-VDCTLSLG 60

Query: 61  TPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRR----GGDKSSSNADQMFAR 120
           TPSTRMTE+DEKRREEQ SASNFAWDLSRTKH  SSK+ RR    GGDKS +N DQMF+R
Sbjct: 61  TPSTRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMFSR 120

Query: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHH 180
           HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQA+SMY+NE SSWLQHH
Sbjct: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHH 180

Query: 181 SHTQRTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 219
           SH+Q+TPRF HGI ND+NP VA LSWSLNDTEQPQLYYDFTS
Sbjct: 181 SHSQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 220

[Close]

BLAST of Carg16048 vs. ExPASy TrEMBL
Match: A0A6J1GDX7 (GATA transcription factor 18-like OS=Cucurbita moschata OX=3662 GN=LOC111453070 PE=3 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.2e-102
Identity = 188/222 (84.68%), Postives = 200/222 (90.09%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG 60
           MMQRCGSYQCYSAGECSC  AFY QQ ++FS PAYNNYYES+HYSF SSSP VDCTLSLG
Sbjct: 1   MMQRCGSYQCYSAGECSC-GAFYAQQGSYFSTPAYNNYYESEHYSFDSSSP-VDCTLSLG 60

Query: 61  TPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRR----GGDKSSSNADQMFAR 120
           TPSTRMTE+DEKRREEQ SASNFAWDLSRTKH  SSK+ RR    GGDKS +N DQMF+R
Sbjct: 61  TPSTRMTEYDEKRREEQHSASNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMFSR 120

Query: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHH 180
           HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQA+SMY+NE SSWLQHH
Sbjct: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQHH 180

Query: 181 SHTQRTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 219
           SH+Q+TPRF HGI ND+NP VA LSWSLNDTEQPQLYYDFTS
Sbjct: 181 SHSQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 220

[Close]

BLAST of Carg16048 vs. ExPASy TrEMBL
Match: A0A5A7T229 (GATA transcription factor 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002070 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 7.7e-102
Identity = 186/224 (83.04%), Postives = 202/224 (90.18%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLG 60
           MMQRCGSYQCYSAGECSC   +YGQQ T+FS+P YNNYYE++HYSF+SSSP VDCTLSLG
Sbjct: 1   MMQRCGSYQCYSAGECSCN-GYYGQQGTYFSLPTYNNYYETEHYSFESSSP-VDCTLSLG 60

Query: 61  TPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRR-----GGDKS-SSNADQMF 120
           TPSTRMTE+DEKRREEQ SASNF WDL RTKHP SSK+ RR     G DKS ++N DQMF
Sbjct: 61  TPSTRMTEYDEKRREEQHSASNFTWDLPRTKHPHSSKTTRRSSANSGSDKSNANNGDQMF 120

Query: 121 ARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQ 180
           ARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQA+SMYRNE SSWLQ
Sbjct: 121 ARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYRNEASSWLQ 180

Query: 181 HHSHTQRTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 219
           HHSH+QRTPRF+HGI N++NPSVA L+WSLNDTEQPQLYYDFTS
Sbjct: 181 HHSHSQRTPRFSHGIANELNPSVAFLTWSLNDTEQPQLYYDFTS 222

[Close]

BLAST of Carg16048 vs. TAIR 10
Match: AT3G50870.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 136.3 bits (342), Expect = 2.9e-32
Identity = 103/280 (36.79%), Postives = 130/280 (46.43%), Query Frame = 0


Query: 5   CGSYQCYSAGEC--SCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLGTP 64
           CG +  +S   C  +   +  G  +  FSM      +E     +  SS +VDCTLSLGTP
Sbjct: 18  CGMFHHHSQSCCYNNNNNSNAGSYSMVFSM-QNGGVFEQNGEDYHHSSSLVDCTLSLGTP 77

Query: 65  STRMTEFDEKRREEQQSA-----SNFAWDLSRTKH------------------PPSSKSG 124
           STR+ E DEKRR    S      SNF WDL  TK+                  P    SG
Sbjct: 78  STRLCEEDEKRRRSTSSGASSCISNF-WDLIHTKNNNSKTAPYNNVPSFSANKPSRGCSG 137

Query: 125 RRGGDKSSSNADQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERK-AASSG 184
             GG       D + AR CANCDTT+TPLWRNGP GPKSLCNACGIR+KKEER+  A++G
Sbjct: 138 GGGGGGGGGGGDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAATG 197

Query: 185 ------------------------QQASSMYRNETSSWLQHHSHTQRTP----------- 218
                                     A++   N  + W  HHS TQR P           
Sbjct: 198 NTVVGAAPVQTDQYGHHNSGYNNYHAATNNNNNNGTPWAHHHS-TQRVPCNYPANEIRFM 257

[Close]

BLAST of Carg16048 vs. TAIR 10
Match: AT4G36620.1 (GATA transcription factor 19 )

HSP 1 Score: 122.5 bits (306), Expect = 4.3e-28
Identity = 81/220 (36.82%), Postives = 112/220 (50.91%), Query Frame = 0


Query: 35  YNNYYESQHYSFQSSSPV--VDCTLSLGTPSTRMTEFDEKRREEQQSASNFAWDLSRTKH 94
           ++ ++  ++     SSP   VDCTLSLGTPSTR+   D++RR    ++    WD      
Sbjct: 3   FSMFFSPENDVSHHSSPYASVDCTLSLGTPSTRLCNEDDERRFSSHTSDTIGWDFLN--- 62

Query: 95  PPSSKSGRRGGDKSSSNADQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEER 154
              SK G  GG         + AR CANCDTT+TPLWRNGP GPKSLCNACGIR+KKEER
Sbjct: 63  --GSKKGGGGG------GHNLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 122

Query: 155 KAASS------------------GQQASSMYRNETSSWLQ----HHSH-TQRTPRFAHG- 214
           +A+++                   Q +++ Y N  + +      HH H TQR P ++   
Sbjct: 123 RASTARNSTSGGGSTAAGVPTLDHQASANYYYNNNNQYASSSPWHHQHNTQRVPYYSPAN 182

Query: 215 -----------IGNDMNPSVAILSWSLNDTEQPQLYYDFT 218
                      + +D+      LSW LN  ++  L +DFT
Sbjct: 183 NEYSYVDDVRVVDHDVTTD-PFLSWRLNVADRTGLVHDFT 210

[Close]

BLAST of Carg16048 vs. TAIR 10
Match: AT2G18380.1 (GATA transcription factor 20 )

HSP 1 Score: 105.1 bits (261), Expect = 7.0e-23
Identity = 68/164 (41.46%), Postives = 91/164 (55.49%), Query Frame = 0


Query: 37  NYYESQHYSFQSSSPVVDCTLSLGTPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSS 96
           N++    Y+  SSS  VDCTLSLGTPSTR+   D+  R    +++N + D         +
Sbjct: 22  NHHNYDPYNNFSSSTSVDCTLSLGTPSTRL---DDHHRFSSANSNNISGDFYIHGGNAKT 81

Query: 97  KSGRRGGDKSSSNADQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKA-- 156
            S ++GG   S        R CA+CDTT+TPLWRNGP GPKSLCNACGIR+KKEER+A  
Sbjct: 82  SSYKKGGVAHS------LPRRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEERRATA 141

Query: 157 -----ASSGQQASSM-----YRNETSSWLQHHSH-TQRTPRFAH 188
                +  G  A+ +     Y    + +  HH H    +P +AH
Sbjct: 142 RNLTISGGGSSAAEVPVENSYNGGGNYYSHHHHHYASSSPSWAH 176

[Close]

BLAST of Carg16048 vs. TAIR 10
Match: AT5G56860.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-11
Identity = 44/126 (34.92%), Postives = 63/126 (50.00%), Query Frame = 0


Query: 36  NNYYESQHYSFQSSSPVVDCTLSLGTPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPS 95
           NN+ ES HY                 P    T FDE   E+     NF   L+R     +
Sbjct: 171 NNHKESDHY-----------------PLNHKTNFDEDHHED----LNFKNVLTRKTTAAT 230

Query: 96  SKSGRRGGDKSSSNADQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAA 155
           +++     +++  + +    R C++C+TT TPLWR+GP GPKSLCNACGIR +K  R A 
Sbjct: 231 TENRYNTINENGYSNNNGVIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAM 275

Query: 156 SSGQQA 162
           ++   A
Sbjct: 291 AAAAAA 275

[Close]

BLAST of Carg16048 vs. TAIR 10
Match: AT5G26930.1 (GATA transcription factor 23 )

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-10
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 116 RHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEER 153
           R C+ C TT TP+WR GP+GPKSLCNACGIR++K+ R
Sbjct: 26  RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRR 62

The following BLAST results are available for this feature:

BLAST of Carg16048 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962877.1	4.3e-123	100.00	GATA transcription factor 18-like [Cucurbita moschata] >KAG6594828.1 GATA transc...	[more]
XP_023003838.1	1.3e-122	99.54	GATA transcription factor 18-like [Cucurbita maxima]	[more]
XP_023518599.1	1.3e-119	97.72	GATA transcription factor 18-like [Cucurbita pepo subsp. pepo]	[more]
XP_022978554.1	4.9e-103	85.14	GATA transcription factor 18-like [Cucurbita maxima]	[more]
XP_022949779.1	2.5e-102	84.68	GATA transcription factor 18-like [Cucurbita moschata] >XP_023544803.1 GATA tran...	[more]

BLAST of Carg16048 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LC79	4.0e-31	36.79	GATA transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=GATA18 PE=1 SV=2	[more]
Q6QPM2	6.0e-27	36.82	GATA transcription factor 19 OS=Arabidopsis thaliana OX=3702 GN=GATA19 PE=1 SV=2	[more]
Q9ZPX0	9.9e-22	41.46	GATA transcription factor 20 OS=Arabidopsis thaliana OX=3702 GN=GATA20 PE=2 SV=2	[more]
Q6L5E5	1.0e-18	41.29	GATA transcription factor 15 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA15 ...	[more]
B8AX51	3.9e-18	35.35	GATA transcription factor 15 OS=Oryza sativa subsp. indica OX=39946 GN=GATA15 PE...	[more]

BLAST of Carg16048 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HDS2	2.1e-123	100.00	GATA transcription factor 18-like OS=Cucurbita moschata OX=3662 GN=LOC111463241 ...	[more]
A0A6J1KXS3	6.1e-123	99.54	GATA transcription factor 18-like OS=Cucurbita maxima OX=3661 GN=LOC111497301 PE...	[more]
A0A6J1IUC2	2.4e-103	85.14	GATA transcription factor 18-like OS=Cucurbita maxima OX=3661 GN=LOC111478501 PE...	[more]
A0A6J1GDX7	1.2e-102	84.68	GATA transcription factor 18-like OS=Cucurbita moschata OX=3662 GN=LOC111453070 ...	[more]
A0A5A7T229	7.7e-102	83.04	GATA transcription factor 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of Carg16048 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50870.1	2.9e-32	36.79	GATA type zinc finger transcription factor family protein	[more]
AT4G36620.1	4.3e-28	36.82	GATA transcription factor 19	[more]
AT2G18380.1	7.0e-23	41.46	GATA transcription factor 20	[more]
AT5G56860.1	2.1e-11	34.92	GATA type zinc finger transcription factor family protein	[more]
AT5G26930.1	1.4e-10	67.57	GATA transcription factor 23	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 112..163 e-value: 2.1E-18 score: 77.1
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 118..152 e-value: 3.0E-18 score: 65.1
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 118..143
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 112..148 score: 14.245893
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 118..149 e-value: 2.26231E-14 score: 63.1606
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 114..183 e-value: 2.5E-17 score: 64.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..109
None	No IPR available	PANTHER	PTHR46813:SF5	GATA TRANSCRIPTION FACTOR 18	coord: 1..215
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 114..153
IPR044272	GATA transcription factor 18/19/20	PANTHER	PTHR46813	GATA TRANSCRIPTION FACTOR 18	coord: 1..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16048-RA	Carg16048-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009908	flower development
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding