Carg16047 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16047
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 2181566 .. 2182712 (+)
RNA-Seq ExpressionCarg16047
SyntenyCarg16047
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTTAATGTAACATTGCATCTCATCTTGTCATCTTGGTCCCCAATCGATATAGTCTATATGTCTTGGCTTCATTCTAAGTCTCATGACATGTGTGGCAAAGCACAGCGTTTTCAGCCCTACACTTGGGATGACTGCGGTGGAGGCCTAGGCCATTACACCGCCCGTCCCGAGATCTTCCAATTTGGAATAGTAAACAGGTGTTACCTTTTATCCCATCTTGATAGCCAGGCGACCCGCCGCACCGGGCTAAAAGATAGTAGCTGCATGAATCGAAGCAAATACTAGAGTGGGCCCCTTGACTCTAAGCCGTACGTACCATTGTTCAATGCCATATTCCGCCGCGTAGAAACTTTTTCTTGTTCTATGGTGTGGGGCTGAGGGGATCCGTATATGTTGTTCAGGTTGATCAGAAGGAGGATATGAAGCATTGCTGGGTAGACCATGACTCCAACCATAGGAACTTGGAGTTCATATCATGGTGAAGGTAAGGTTGTACTCTTCCGATCTTCACGACTTCCCGCTTTGCCTGGCTCGTTCTCCAGCCTCACTCGTGGCTCTCCACGGGAGGGCCATTGAACAACTGGAAAAAGCCCGAGCCTTGCTTTGCCATCCACTCTGGTTTCGTCCGTTGCGCGACTATCTTAGTCAAAGGATCGGCCCGCCGTTATTCAAATGTACATTTGATGGTTGAGGTATTAATATCCGAATTAATAATATTTTAAATCAATGAATAAAATTAGAAATATATTGACAAGATTATTAATAAATTTATTATTTATTATTTATTATAAATAAATAAATAAATAATAAATAATAAATAAAACTGCTTCTCCGTCGTAGTCTTGAGAGTTCCAATCAAATCTGAAATCTAAAGCCTTCGCTCATTTGGACCCTCCCGCCTCTTCCTCTTCCTCTTCCTCTTCGTAATTTCACTCCACACTCATCTCCCTCCTTCATTCTTCCTCGCCGTCATGGTCGTCATCTACACGCTCTGATTATCCACCTTCAATCTCACTCAATCACCTATTCTTGCTACGATTTTTTTCTCCGGTTTTAGGGATCCGTTTGCCTGGGTGCGGGCCCGAATTCTCTGGAAATCGGACAGGAAAGAACACCCATACGATTCCCCGTCGATCGCTAA

mRNA sequence

ATGTCTCTTAATGTAACATTGCATCTCATCTTGTCATCTTGGTCCCCAATCGATATAGTCTATATGTCTTGGCTTCATTCTAAGTCTCATGACATGTGTGGCAAAGCACAGCGTTTTCAGCCCTACACTTGGGATGACTGCGGTGGAGGCCTAGGCCATTACACCGCCCGTCCCGAGATCTTCCAATTTGGAATAGTTGATCAGAAGGAGGATATGAAGCATTGCTGGCCTCACTCGTGGCTCTCCACGGGAGGGCCATTGAACAACTGGAAAAAGCCCGAGCCTTGCTTTGCCATCCACTCTGGTTTCGTCCGTTGCGCGACTATCTTAGTCAAAGGATCGGCCCGCCGTTATTCAAATGTACATTTGATGGTTGAGGGATCCGTTTGCCTGGGTGCGGGCCCGAATTCTCTGGAAATCGGACAGGAAAGAACACCCATACGATTCCCCGTCGATCGCTAA

Coding sequence (CDS)

ATGTCTCTTAATGTAACATTGCATCTCATCTTGTCATCTTGGTCCCCAATCGATATAGTCTATATGTCTTGGCTTCATTCTAAGTCTCATGACATGTGTGGCAAAGCACAGCGTTTTCAGCCCTACACTTGGGATGACTGCGGTGGAGGCCTAGGCCATTACACCGCCCGTCCCGAGATCTTCCAATTTGGAATAGTTGATCAGAAGGAGGATATGAAGCATTGCTGGCCTCACTCGTGGCTCTCCACGGGAGGGCCATTGAACAACTGGAAAAAGCCCGAGCCTTGCTTTGCCATCCACTCTGGTTTCGTCCGTTGCGCGACTATCTTAGTCAAAGGATCGGCCCGCCGTTATTCAAATGTACATTTGATGGTTGAGGGATCCGTTTGCCTGGGTGCGGGCCCGAATTCTCTGGAAATCGGACAGGAAAGAACACCCATACGATTCCCCGTCGATCGCTAA

Protein sequence

MSLNVTLHLILSSWSPIDIVYMSWLHSKSHDMCGKAQRFQPYTWDDCGGGLGHYTARPEIFQFGIVDQKEDMKHCWPHSWLSTGGPLNNWKKPEPCFAIHSGFVRCATILVKGSARRYSNVHLMVEGSVCLGAGPNSLEIGQERTPIRFPVDR
Homology
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BLAST of Carg16047 vs. NCBI nr
Match: KAG7026791.1 (hypothetical protein SDJN02_10798, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342.0 bits (876), Expect = 2.6e-90
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MSLNVTLHLILSSWSPIDIVYMSWLHSKSHDMCGKAQRFQPYTWDDCGGGLGHYTARPEI 60
           MSLNVTLHLILSSWSPIDIVYMSWLHSKSHDMCGKAQRFQPYTWDDCGGGLGHYTARPEI
Sbjct: 1   MSLNVTLHLILSSWSPIDIVYMSWLHSKSHDMCGKAQRFQPYTWDDCGGGLGHYTARPEI 60

Query: 61  FQFGIVDQKEDMKHCWPHSWLSTGGPLNNWKKPEPCFAIHSGFVRCATILVKGSARRYSN 120
           FQFGIVDQKEDMKHCWPHSWLSTGGPLNNWKKPEPCFAIHSGFVRCATILVKGSARRYSN
Sbjct: 61  FQFGIVDQKEDMKHCWPHSWLSTGGPLNNWKKPEPCFAIHSGFVRCATILVKGSARRYSN 120

Query: 121 VHLMVEGSVCLGAGPNSLEIGQERTPIRFPVDR 154
           VHLMVEGSVCLGAGPNSLEIGQERTPIRFPVDR
Sbjct: 121 VHLMVEGSVCLGAGPNSLEIGQERTPIRFPVDR 153

The following BLAST results are available for this feature:
BLAST of Carg16047 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026791.12.6e-90100.00hypothetical protein SDJN02_10798, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg16047 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16047 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16047 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16047-RACarg16047-RAmRNA