Carg16025 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16025
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Translation initiation factor IF-2, putative isoform 1
Location	Carg_Chr07: 2289763 .. 2291567 (-)
RNA-Seq Expression	Carg16025
Synteny	Carg16025

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTTTTTGTTCTGTTTTCAATTTATGAAAATCCAGTGACGAAGTGTTTGGATTCGTTTAAGAATGCCGCGAAGTGAGTAGTCCAAAGGATTCAAGAGAGAATTGTTGCTGAACATGGCAAGGCGAAAGGCGAAGAAAACTGTTAAGAATTCTAGCCCTTCACCTAGGGAAAAAGCAAAGGATGAAGCAGAGAATGAGTTAAAAAGTGAGGAACAGGCACCTTTGGTGCCCGACGAGGACGGTATGTTGAAATTGATTCTTATTTTCCGAAGCCTGAACTTAATTTTGGGAAGGAAAATTGTTTTGCGTCTCTTTCAATGACTATTATTCATTGAATTTATATTTTTCCGCTGCTTTTGCCTTCATTTGTGTATAGTTGAACGTCATGCTGCTGCAATTCGCGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCAAGGAGAAACTTCCAAACTTGTCCATTTCTGGAAAAGGCGAAGTAGGAGAAATTGAAGTACAGTGGAAGGAAACTGAAAGTGAATTACGCGCCAATCCAGTTGATGGAATGGATGTACACGCTTCTCTCTTACATCGTCTGTCCATAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTAAATGGATTTGAATTTTCCAGTAAATCAGGTATATGTAGATTTTGGATTATGGTGCATAAAACGAACTGCTAAGATGCTCCCGTATTTGATGCTTGTTTGCTGCAACTCACCGTATTTTCTCTACTGGTGGCAGTGAAAACCAATCCTTTCAATGTTGAGAGCCTGCAAATTCCGAGCTTGGTAAGTAATTTTGCGTTTGATACCTTAAACTCTTTACTTCGATTTCTCTTCTTTAGATCAGTAAAATGAATGATACCATGTGAGCTCACAAAATTTGTTTTAGTTTGTCTATGTCTATTGTTTCATGTTGTTTATTTGGTGAAGCTGAAGATTGTCCTCTCGTCGGATGGTCATTCATAAGAAGATGCTCGGTATTGACTGATATATTTATTGATAATTCCTGCATTTTAGGTTTTGGAGGCAGAGCCCTCGGATAGTATGATGCTTGGAATGACAGATATTCTCCAAACTCCTGGGGTTAGAATCTTCACGTTTTTGCACACCACTTGTTAATACCCTAGAGTTGTCTGTTATTGGTATTTTCCAGTATTTGTTACATTGTTGTTGACTCAAATCTAGGTACATAGTGGTGGTCTTGGTCAAAGGAACAAAGTTACTATATTGGTAGCGTCTGTTTTCCATTATTCATTTTTATTTTTATGTTCAATGCTTATCTCATTTCAATATATATAAGAAACAATTTGATTGACAGAATGAAATTTAGAAAACAATTCAGGGAAAGTCTTGACGGGAGGTGCAAAAATGAATTCCAACAAGTACAAAAGTTGGTAAGGCTATGACTAGAAAACAGCTTGAAGTTTATTACACTCAGCTTCGCGAGGTCTCATGGGGAATTGTTTCAAAAAAGTCTTCTTTATCTCTTTTGAAAAAGATCGAGTAACACGTTTTGATAATTGTTTCTAAGAGTCTAATTTTGCTTTTATTTAGTGTATTCTACAATAAGCTAACTAGTTCTGCTTTCATAGGTAAGTAACCAAAGATTGTCCATTGGAATGACACCGAGAACCCGAAGGCTTCCAAAGCCCGGTGAGATGCTTGTATCTATACACGGATCCCCCCTTGGTGTTTATAAGGAAGACAACATGGAAGCAATACAT

mRNA sequence

AAGTTTTTGTTCTGTTTTCAATTTATGAAAATCCAGTGACGAAGTGTTTGGATTCGTTTAAGAATGCCGCGAAGTGAGTAGTCCAAAGGATTCAAGAGAGAATTGTTGCTGAACATGGCAAGGCGAAAGGCGAAGAAAACTGTTAAGAATTCTAGCCCTTCACCTAGGGAAAAAGCAAAGGATGAAGCAGAGAATGAGTTAAAAAGTGAGGAACAGGCACCTTTGGTGCCCGACGAGGACGTTGAACGTCATGCTGCTGCAATTCGCGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCAAGGAGAAACTTCCAAACTTGTCCATTTCTGGAAAAGGCGAAGTAGGAGAAATTGAAGTACAGTGGAAGGAAACTGAAAGTGAATTACGCGCCAATCCAGTTGATGGAATGGATGTACACGCTTCTCTCTTACATCGTCTGTCCATAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTAAATGGATTTGAATTTTCCAGTAAATCAGTGAAAACCAATCCTTTCAATGTTGAGAGCCTGCAAATTCCGAGCTTGGTTTTGGAGGCAGAGCCCTCGGATAGTATGATGCTTGGAATGACAGATATTCTCCAAACTCCTGGGGTAAGTAACCAAAGATTGTCCATTGGAATGACACCGAGAACCCGAAGGCTTCCAAAGCCCGGTGAGATGCTTGTATCTATACACGGATCCCCCCTTGGTGTTTATAAGGAAGACAACATGGAAGCAATACAT

Coding sequence (CDS)

ATGGCAAGGCGAAAGGCGAAGAAAACTGTTAAGAATTCTAGCCCTTCACCTAGGGAAAAAGCAAAGGATGAAGCAGAGAATGAGTTAAAAAGTGAGGAACAGGCACCTTTGGTGCCCGACGAGGACGTTGAACGTCATGCTGCTGCAATTCGCGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCAAGGAGAAACTTCCAAACTTGTCCATTTCTGGAAAAGGCGAAGTAGGAGAAATTGAAGTACAGTGGAAGGAAACTGAAAGTGAATTACGCGCCAATCCAGTTGATGGAATGGATGTACACGCTTCTCTCTTACATCGTCTGTCCATAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTAAATGGATTTGAATTTTCCAGTAAATCAGTGAAAACCAATCCTTTCAATGTTGAGAGCCTGCAAATTCCGAGCTTGGTTTTGGAGGCAGAGCCCTCGGATAGTATGATGCTTGGAATGACAGATATTCTCCAAACTCCTGGGGTAAGTAACCAAAGATTGTCCATTGGAATGACACCGAGAACCCGAAGGCTTCCAAAGCCCGGTGAGATGCTTGTATCTATACACGGATCCCCCCTTGGTGTTTATAAGGAAGACAACATGGAAGCAATACAT

Protein sequence

MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

Homology

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BLAST of Carg16025 vs. NCBI nr
Match: KAG7026813.1 (hypothetical protein SDJN02_10820, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 452.2 bits (1162), Expect = 2.7e-123
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0


Query: 1   MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIER 60
           MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIER
Sbjct: 1   MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120
           LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120

Query: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180
           GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS
Sbjct: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180

Query: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 238
           MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 237

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BLAST of Carg16025 vs. NCBI nr
Match: KAG6594850.1 (hypothetical protein SDJN03_11403, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 449.1 bits (1154), Expect = 2.3e-122
Identity = 236/237 (99.58%), Postives = 236/237 (99.58%), Query Frame = 0


Query: 1   MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIER 60
           MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLV DEDVERHAAAIRAIRDVEIER
Sbjct: 1   MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120
           LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120

Query: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180
           GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS
Sbjct: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180

Query: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 238
           MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 237

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BLAST of Carg16025 vs. NCBI nr
Match: XP_022962735.1 (uncharacterized protein LOC111463139 [Cucurbita moschata] >XP_022962736.1 uncharacterized protein LOC111463139 [Cucurbita moschata] >XP_022962737.1 uncharacterized protein LOC111463139 [Cucurbita moschata] >XP_022962739.1 uncharacterized protein LOC111463139 [Cucurbita moschata] >XP_022962740.1 uncharacterized protein LOC111463139 [Cucurbita moschata])

HSP 1 Score: 431.0 bits (1107), Expect = 6.5e-117
Identity = 230/237 (97.05%), Postives = 230/237 (97.05%), Query Frame = 0


Query: 1   MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIER 60
           MARRKAKKTVK S  SPREK KDEAENELKSEEQ PLV DEDVERHAAAIRAIRDVEIER
Sbjct: 1   MARRKAKKTVKKS--SPREKEKDEAENELKSEEQEPLVSDEDVERHAAAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120
           LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120

Query: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180
           GMDVHASLL RLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS
Sbjct: 121 GMDVHASLLQRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180

Query: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 238
           MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 235

[Close]

BLAST of Carg16025 vs. NCBI nr
Match: XP_023003233.1 (uncharacterized protein LOC111496903 [Cucurbita maxima] >XP_023003234.1 uncharacterized protein LOC111496903 [Cucurbita maxima] >XP_023003235.1 uncharacterized protein LOC111496903 [Cucurbita maxima] >XP_023003236.1 uncharacterized protein LOC111496903 [Cucurbita maxima])

HSP 1 Score: 429.9 bits (1104), Expect = 1.5e-116
Identity = 229/237 (96.62%), Postives = 229/237 (96.62%), Query Frame = 0


Query: 1   MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIER 60
           MARRKAKK VK S  SPREK KDEAENELKSEEQAPLV DEDVERHAAAIRAIRDVEIER
Sbjct: 1   MARRKAKKIVKKS--SPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120
           LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGK EVGEIEVQWKETESELRANPVD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKSEVGEIEVQWKETESELRANPVD 120

Query: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180
           GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS
Sbjct: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180

Query: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 238
           MMLGMTDILQTPG SNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 181 MMLGMTDILQTPGASNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 235

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BLAST of Carg16025 vs. NCBI nr
Match: XP_023518319.1 (uncharacterized protein LOC111781838 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 429.1 bits (1102), Expect = 2.5e-116
Identity = 229/237 (96.62%), Postives = 231/237 (97.47%), Query Frame = 0


Query: 1   MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIER 60
           MARRKAKKTVK +  SPREK KDEAENELKSEEQAPLV DEDVERHAAAIRAIRDVEIER
Sbjct: 1   MARRKAKKTVKKT--SPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120
           LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQ KETESELRANP+D
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQRKETESELRANPID 120

Query: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180
           GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS
Sbjct: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180

Query: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 238
           MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 235

[Close]

BLAST of Carg16025 vs. ExPASy TrEMBL
Match: A0A6J1HHY4 (uncharacterized protein LOC111463139 OS=Cucurbita moschata OX=3662 GN=LOC111463139 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 3.2e-117
Identity = 230/237 (97.05%), Postives = 230/237 (97.05%), Query Frame = 0


Query: 1   MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIER 60
           MARRKAKKTVK S  SPREK KDEAENELKSEEQ PLV DEDVERHAAAIRAIRDVEIER
Sbjct: 1   MARRKAKKTVKKS--SPREKEKDEAENELKSEEQEPLVSDEDVERHAAAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120
           LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120

Query: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180
           GMDVHASLL RLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS
Sbjct: 121 GMDVHASLLQRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180

Query: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 238
           MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 235

[Close]

BLAST of Carg16025 vs. ExPASy TrEMBL
Match: A0A6J1KR76 (uncharacterized protein LOC111496903 OS=Cucurbita maxima OX=3661 GN=LOC111496903 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 7.0e-117
Identity = 229/237 (96.62%), Postives = 229/237 (96.62%), Query Frame = 0


Query: 1   MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIER 60
           MARRKAKK VK S  SPREK KDEAENELKSEEQAPLV DEDVERHAAAIRAIRDVEIER
Sbjct: 1   MARRKAKKIVKKS--SPREKEKDEAENELKSEEQAPLVSDEDVERHAAAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120
           LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGK EVGEIEVQWKETESELRANPVD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKSEVGEIEVQWKETESELRANPVD 120

Query: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180
           GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS
Sbjct: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180

Query: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 238
           MMLGMTDILQTPG SNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 181 MMLGMTDILQTPGASNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 235

[Close]

BLAST of Carg16025 vs. ExPASy TrEMBL
Match: A0A6J1ILD3 (uncharacterized protein LOC111478496 OS=Cucurbita maxima OX=3661 GN=LOC111478496 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.7e-99
Identity = 195/237 (82.28%), Postives = 214/237 (90.30%), Query Frame = 0


Query: 1   MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIER 60
           MARRKAKK+VK SSPSP  +AKD + NELKSE+QA LV DEDVERHA AIRAIRDVEIER
Sbjct: 1   MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120
           LITELRLLRSYFNKEQLQTPLLQFF EKLP+LSIS +GE GEIEVQWK+TE EL  NP D
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFVEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180
           G+D+HASLLHRLS AYPN SAG+RS NGFEFSSKSVKTNPFNVE+LQIP+ VLE EPSD+
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGIRSFNGFEFSSKSVKTNPFNVENLQIPNFVLE-EPSDN 180

Query: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 238
           M+LGM D+LQTPG SNQRLSIGMTP+TRRLPKPGE++VSIHGSPLGVY+E NMEAIH
Sbjct: 181 MVLGMPDLLQTPGASNQRLSIGMTPKTRRLPKPGEVIVSIHGSPLGVYREYNMEAIH 236

[Close]

BLAST of Carg16025 vs. ExPASy TrEMBL
Match: A0A6J1BYE7 (uncharacterized protein LOC111005854 OS=Momordica charantia OX=3673 GN=LOC111005854 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 3.9e-99
Identity = 199/237 (83.97%), Postives = 209/237 (88.19%), Query Frame = 0


Query: 1   MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIER 60
           MARRKAKKT K  SPSP      EAENE K EEQAPLV +EDVERHAAAIRAIRDVEIER
Sbjct: 1   MARRKAKKTAKKLSPSPVR----EAENESKPEEQAPLVSNEDVERHAAAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120
           LITELRLLRSYFNKEQLQTP+LQFF+EKLPNLSIS  GE GEIEVQWK+   EL   P D
Sbjct: 61  LITELRLLRSYFNKEQLQTPILQFFEEKLPNLSISATGEQGEIEVQWKDAAGELHTKPAD 120

Query: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180
           G+D+HASLLHRLSIAYPN SAGM+S+NGFEFSSKSVKTN FNVE+LQIPS VLE EPSDS
Sbjct: 121 GIDIHASLLHRLSIAYPNCSAGMQSMNGFEFSSKSVKTNAFNVENLQIPSFVLE-EPSDS 180

Query: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 238
           MMLGM DILQTPGV NQRLSIGMTP+TRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 181 MMLGMPDILQTPGVCNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 232

[Close]

BLAST of Carg16025 vs. ExPASy TrEMBL
Match: A0A5A7SXV4 (Translation initiation factor IF-2, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002410 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.9e-96
Identity = 192/237 (81.01%), Postives = 209/237 (88.19%), Query Frame = 0


Query: 1   MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIER 60
           MARRKAKKTVK SSPS    AKDEA +++K+        DEDVERHAAAIRAIRDVEIER
Sbjct: 1   MARRKAKKTVKKSSPSSGRHAKDEAADKIKTHS------DEDVERHAAAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120
           LITELRLLRSYFNKEQLQTPLLQFF+EKLP+LSIS +G+ GEIEVQWK+TE EL  NP D
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDS 180
           G+D+HASLLHRLS AYP  SAGMRS NGFEFSSKSVKTNPFN E+LQIP+ VLE EPSD+
Sbjct: 121 GVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLE-EPSDN 180

Query: 181 MMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 238
           M+LGM DILQTPG+SNQRLSIGMTP+TRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 181 MVLGMPDILQTPGISNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 230

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BLAST of Carg16025 vs. TAIR 10
Match: AT4G39630.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 192.2 bits (487), Expect = 4.8e-49
Identity = 118/239 (49.37%), Postives = 161/239 (67.36%), Query Frame = 0


Query: 1   MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIER 60
           M +RKAK+ VK +     +      E  ++ EE+     DE+VER  AAIRAIRDVEIE+
Sbjct: 1   MPKRKAKECVKLTEEDRND------EKRIRIEEKKEDFVDEEVERQIAAIRAIRDVEIEQ 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKETESELRANPVD 120
           ++T LRLLRSYF +EQL TP+L FFKE LP+LSIS   E GEIE++W++   +  A   +
Sbjct: 61  MLTALRLLRSYFTEEQLHTPVLDFFKENLPDLSISRNEETGEIELKWRDENGDSFAGNEN 120

Query: 121 GMDVHASLLHRLSIAYPN-YSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSD 180
           G+D++ S+L RLS+ + + YS    SL G++    +VK N    ++ Q+ +LV +   S+
Sbjct: 121 GVDMNYSILKRLSMRFTDLYSRS--SLGGYDLPD-NVKANLLGTDNPQLDNLVFQG-TSE 180

Query: 181 SMMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIH 238
           + ML   D  QTPGV+ QRLS GMTP+T RLPK GEM++S+HGSPLGVYKED NM AI+
Sbjct: 181 NQMLPGHDAFQTPGVNGQRLSFGMTPKTLRLPKAGEMMLSVHGSPLGVYKEDHNMGAIN 229

The following BLAST results are available for this feature:

BLAST of Carg16025 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026813.1	2.7e-123	100.00	hypothetical protein SDJN02_10820, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6594850.1	2.3e-122	99.58	hypothetical protein SDJN03_11403, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022962735.1	6.5e-117	97.05	uncharacterized protein LOC111463139 [Cucurbita moschata] >XP_022962736.1 unchar...	[more]
XP_023003233.1	1.5e-116	96.62	uncharacterized protein LOC111496903 [Cucurbita maxima] >XP_023003234.1 uncharac...	[more]
XP_023518319.1	2.5e-116	96.62	uncharacterized protein LOC111781838 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg16025 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg16025 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HHY4	3.2e-117	97.05	uncharacterized protein LOC111463139 OS=Cucurbita moschata OX=3662 GN=LOC1114631...	[more]
A0A6J1KR76	7.0e-117	96.62	uncharacterized protein LOC111496903 OS=Cucurbita maxima OX=3661 GN=LOC111496903...	[more]
A0A6J1ILD3	1.7e-99	82.28	uncharacterized protein LOC111478496 OS=Cucurbita maxima OX=3661 GN=LOC111478496...	[more]
A0A6J1BYE7	3.9e-99	83.97	uncharacterized protein LOC111005854 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A5A7SXV4	6.9e-96	81.01	Translation initiation factor IF-2, putative isoform 1 OS=Cucumis melo var. maku...	[more]

BLAST of Carg16025 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39630.1	4.8e-49	49.37	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	PANTHER	PTHR37248	TRANSLATION INITIATION FACTOR	coord: 1..237

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16025-RA	Carg16025-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003743	translation initiation factor activity