Carg16022 (gene) Silver-seed gourd (SMH-JMG-627) v2
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Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTACGCAAAATGTGGAGATCCAGTTGTTTTTAACAGGATGATGCTGAAGAACATTTCAACTTGGAATGATTTGATTTCATGTACATGCAATCTGGGCATAGTTTCTTGGAATTCGACGATTTCAGGGTATGATAAGTTCACCTTGGCTAGCGTTTTATCAAATGTTTACATGCTTATATTATAAGAACAGAAACTGAAACTTCTGAAGCAGTTGGCAATGCTTTGATATCAAATGTATGCAGTGTCAGGATGGGTAGAAATAGCTTTGATTGATTATTGAGCGTAACAGGACTTCAATTGAGAATTATGAAAAACCCAGTTTGTAATGACTGCCATTCTGTTATAAAGTTCATTTCCAAGCTTGTAGGAAGGGAAATCACTGTTAGTGATGCTACTTGGTTTCTCCATTTTAAGGGTGGTTCCTGTTCTTGTCAAGACTACTGGTAGCTGAGATCCCGAGAGAAAATCTAAAGAGAACAATATTTGATACATAAAGTCAAGGTGAACGTCATTCTGAGCTGTGCAGCTATTGTTGTTGTTCCTGCAAAGCCTACCCAAAGGTTCAGCCGGATTGTGGGAAGTGGGCGATTTTGTACTATGAGAAGCTCTGCGGCACCCACGATTCTCAATAGTAAGTTGTCGGCATATCGCGCTAAAACTCTTAAGGTCGTGCATGAGAAAACCATGTACGCAAAATGTGGAGATCCAGTTGTTTTTAACAGGATGATGCTGAAGAACATTTCAACTTGGAATGATTTGATTTCATGTACATGCAATCTGGGCATAGTTTCTTGGAATTCGACGATTTCAGGGGTGGTTCCTGTTCTTGTCAAGACTACTGCTATTGTTGTTGTTCCTGCAAAGCCTACCCAAAGGTTCAGCCGGATTGTGGGAAGTGGGCGATTTTGTACTATGAGAAGCTCTGCGGCACCCACGATTCTCAATAGTAAGTTGTCGGCATATCGCGCTAAAACTCTTAAGGTCGTGCATGAGAAAACC ATGTACGCAAAATGTGGAGATCCAGTTGTTTTTAACAGGATGATGCTGAAGAACATTTCAACTTGGAATGATTTGATTTCATGTACATGCAATCTGGGCATAGTTTCTTGGAATTCGACGATTTCAGGGGTGGTTCCTGTTCTTGTCAAGACTACTGCTATTGTTGTTGTTCCTGCAAAGCCTACCCAAAGGTTCAGCCGGATTGTGGGAAGTGGGCGATTTTGTACTATGAGAAGCTCTGCGGCACCCACGATTCTCAATAGTAAGTTGTCGGCATATCGCGCTAAAACTCTTAAGGTCGTGCATGAGAAAACC MYAKCGDPVVFNRMMLKNISTWNDLISCTCNLGIVSWNSTISGVVPVLVKTTAIVVVPAKPTQRFSRIVGSGRFCTMRSSAAPTILNSKLSAYRAKTLKVVHEKT Homology
BLAST of Carg16022 vs. NCBI nr
Match: KAG7026816.1 (hypothetical protein SDJN02_10823, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 209.1 bits (531), Expect = 1.8e-50 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0
BLAST of Carg16022 vs. NCBI nr
Match: KAG6594852.1 (hypothetical protein SDJN03_11405, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 62.0 bits (149), Expect = 3.5e-06 Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Carg16022 vs. NCBI nr
Match: XP_023543916.1 (pentatricopeptide repeat-containing protein At2g22070 [Cucurbita pepo subsp. pepo] >XP_023543917.1 pentatricopeptide repeat-containing protein At2g22070 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 55.5 bits (132), Expect = 3.3e-04 Identity = 34/63 (53.97%), Postives = 35/63 (55.56%), Query Frame = 0
BLAST of Carg16022 vs. NCBI nr
Match: XP_022950762.1 (pentatricopeptide repeat-containing protein At2g22070 isoform X1 [Cucurbita moschata] >XP_022950763.1 pentatricopeptide repeat-containing protein At2g22070 isoform X1 [Cucurbita moschata]) HSP 1 Score: 55.5 bits (132), Expect = 3.3e-04 Identity = 34/63 (53.97%), Postives = 35/63 (55.56%), Query Frame = 0
BLAST of Carg16022 vs. NCBI nr
Match: KAG6604009.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 55.5 bits (132), Expect = 3.3e-04 Identity = 34/63 (53.97%), Postives = 35/63 (55.56%), Query Frame = 0
BLAST of Carg16022 vs. ExPASy TrEMBL
Match: A0A6J1IT29 (pentatricopeptide repeat-containing protein At2g22070 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478414 PE=3 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04 Identity = 34/63 (53.97%), Postives = 35/63 (55.56%), Query Frame = 0
BLAST of Carg16022 vs. ExPASy TrEMBL
Match: A0A6J1GFR3 (pentatricopeptide repeat-containing protein At2g22070 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453771 PE=3 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04 Identity = 34/63 (53.97%), Postives = 35/63 (55.56%), Query Frame = 0
BLAST of Carg16022 vs. ExPASy TrEMBL
Match: A0A6J1IQ25 (pentatricopeptide repeat-containing protein At2g22070 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478414 PE=3 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04 Identity = 34/63 (53.97%), Postives = 35/63 (55.56%), Query Frame = 0
BLAST of Carg16022 vs. ExPASy TrEMBL
Match: A0A6J1GGT1 (pentatricopeptide repeat-containing protein At2g22070 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453771 PE=3 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04 Identity = 34/63 (53.97%), Postives = 35/63 (55.56%), Query Frame = 0
BLAST of Carg16022 vs. ExPASy TrEMBL
Match: A0A1S4DWB2 (pentatricopeptide repeat-containing protein At2g22070 OS=Cucumis melo OX=3656 GN=LOC103489437 PE=3 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04 Identity = 33/63 (52.38%), Postives = 35/63 (55.56%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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