Carg16022 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16022
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationCarg_Chr07: 2298781 .. 2299466 (+)
RNA-Seq ExpressionCarg16022
SyntenyCarg16022
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGCAAAATGTGGAGATCCAGTTGTTTTTAACAGGATGATGCTGAAGAACATTTCAACTTGGAATGATTTGATTTCATGTACATGCAATCTGGGCATAGTTTCTTGGAATTCGACGATTTCAGGGTATGATAAGTTCACCTTGGCTAGCGTTTTATCAAATGTTTACATGCTTATATTATAAGAACAGAAACTGAAACTTCTGAAGCAGTTGGCAATGCTTTGATATCAAATGTATGCAGTGTCAGGATGGGTAGAAATAGCTTTGATTGATTATTGAGCGTAACAGGACTTCAATTGAGAATTATGAAAAACCCAGTTTGTAATGACTGCCATTCTGTTATAAAGTTCATTTCCAAGCTTGTAGGAAGGGAAATCACTGTTAGTGATGCTACTTGGTTTCTCCATTTTAAGGGTGGTTCCTGTTCTTGTCAAGACTACTGGTAGCTGAGATCCCGAGAGAAAATCTAAAGAGAACAATATTTGATACATAAAGTCAAGGTGAACGTCATTCTGAGCTGTGCAGCTATTGTTGTTGTTCCTGCAAAGCCTACCCAAAGGTTCAGCCGGATTGTGGGAAGTGGGCGATTTTGTACTATGAGAAGCTCTGCGGCACCCACGATTCTCAATAGTAAGTTGTCGGCATATCGCGCTAAAACTCTTAAGGTCGTGCATGAGAAAACC

mRNA sequence

ATGTACGCAAAATGTGGAGATCCAGTTGTTTTTAACAGGATGATGCTGAAGAACATTTCAACTTGGAATGATTTGATTTCATGTACATGCAATCTGGGCATAGTTTCTTGGAATTCGACGATTTCAGGGGTGGTTCCTGTTCTTGTCAAGACTACTGCTATTGTTGTTGTTCCTGCAAAGCCTACCCAAAGGTTCAGCCGGATTGTGGGAAGTGGGCGATTTTGTACTATGAGAAGCTCTGCGGCACCCACGATTCTCAATAGTAAGTTGTCGGCATATCGCGCTAAAACTCTTAAGGTCGTGCATGAGAAAACC

Coding sequence (CDS)

ATGTACGCAAAATGTGGAGATCCAGTTGTTTTTAACAGGATGATGCTGAAGAACATTTCAACTTGGAATGATTTGATTTCATGTACATGCAATCTGGGCATAGTTTCTTGGAATTCGACGATTTCAGGGGTGGTTCCTGTTCTTGTCAAGACTACTGCTATTGTTGTTGTTCCTGCAAAGCCTACCCAAAGGTTCAGCCGGATTGTGGGAAGTGGGCGATTTTGTACTATGAGAAGCTCTGCGGCACCCACGATTCTCAATAGTAAGTTGTCGGCATATCGCGCTAAAACTCTTAAGGTCGTGCATGAGAAAACC

Protein sequence

MYAKCGDPVVFNRMMLKNISTWNDLISCTCNLGIVSWNSTISGVVPVLVKTTAIVVVPAKPTQRFSRIVGSGRFCTMRSSAAPTILNSKLSAYRAKTLKVVHEKT
Homology
[Close]
BLAST of Carg16022 vs. NCBI nr
Match: KAG7026816.1 (hypothetical protein SDJN02_10823, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.1 bits (531), Expect = 1.8e-50
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MYAKCGDPVVFNRMMLKNISTWNDLISCTCNLGIVSWNSTISGVVPVLVKTTAIVVVPAK 60
           MYAKCGDPVVFNRMMLKNISTWNDLISCTCNLGIVSWNSTISGVVPVLVKTTAIVVVPAK
Sbjct: 1   MYAKCGDPVVFNRMMLKNISTWNDLISCTCNLGIVSWNSTISGVVPVLVKTTAIVVVPAK 60

Query: 61  PTQRFSRIVGSGRFCTMRSSAAPTILNSKLSAYRAKTLKVVHEKT 106
           PTQRFSRIVGSGRFCTMRSSAAPTILNSKLSAYRAKTLKVVHEKT
Sbjct: 61  PTQRFSRIVGSGRFCTMRSSAAPTILNSKLSAYRAKTLKVVHEKT 105

[Close]
BLAST of Carg16022 vs. NCBI nr
Match: KAG6594852.1 (hypothetical protein SDJN03_11405, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-06
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 1  MYAKCGDPVVFNRMMLKNISTWNDLIS 28
          MYAKCGDPVVFNRMMLKNISTWNDLIS
Sbjct: 1  MYAKCGDPVVFNRMMLKNISTWNDLIS 27

[Close]
BLAST of Carg16022 vs. NCBI nr
Match: XP_023543916.1 (pentatricopeptide repeat-containing protein At2g22070 [Cucurbita pepo subsp. pepo] >XP_023543917.1 pentatricopeptide repeat-containing protein At2g22070 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.5 bits (132), Expect = 3.3e-04
Identity = 34/63 (53.97%), Postives = 35/63 (55.56%), Query Frame = 0 

Query: 1   MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNST 44
           MYAKCGDP    VVF+RM LKNISTWN LIS     G                IVSWNS 
Sbjct: 186 MYAKCGDPVIAKVVFDRMTLKNISTWNALISLYMQSGQINLAASQFEKMPDRDIVSWNSM 245

[Close]
BLAST of Carg16022 vs. NCBI nr
Match: XP_022950762.1 (pentatricopeptide repeat-containing protein At2g22070 isoform X1 [Cucurbita moschata] >XP_022950763.1 pentatricopeptide repeat-containing protein At2g22070 isoform X1 [Cucurbita moschata])

HSP 1 Score: 55.5 bits (132), Expect = 3.3e-04
Identity = 34/63 (53.97%), Postives = 35/63 (55.56%), Query Frame = 0 

Query: 1   MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNST 44
           MYAKCGDP    VVF+RM LKNISTWN LIS     G                IVSWNS 
Sbjct: 186 MYAKCGDPVIAKVVFDRMTLKNISTWNALISLYMQSGQINLAASQFEKMPDRDIVSWNSM 245

[Close]
BLAST of Carg16022 vs. NCBI nr
Match: KAG6604009.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.5 bits (132), Expect = 3.3e-04
Identity = 34/63 (53.97%), Postives = 35/63 (55.56%), Query Frame = 0 

Query: 1   MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNST 44
           MYAKCGDP    VVF+RM LKNISTWN LIS     G                IVSWNS 
Sbjct: 186 MYAKCGDPVIAKVVFDRMTLKNISTWNALISLYMQSGQINLAASQFEKMPDRDIVSWNSM 245

[Close]
BLAST of Carg16022 vs. ExPASy TrEMBL
Match: A0A6J1IT29 (pentatricopeptide repeat-containing protein At2g22070 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478414 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 34/63 (53.97%), Postives = 35/63 (55.56%), Query Frame = 0 

Query: 1   MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNST 44
           MYAKCGDP    VVF+RM LKNISTWN LIS     G                IVSWNS 
Sbjct: 186 MYAKCGDPVIAKVVFDRMTLKNISTWNALISLYMQSGQINLAASQFEKMPDRDIVSWNSM 245

[Close]
BLAST of Carg16022 vs. ExPASy TrEMBL
Match: A0A6J1GFR3 (pentatricopeptide repeat-containing protein At2g22070 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453771 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 34/63 (53.97%), Postives = 35/63 (55.56%), Query Frame = 0 

Query: 1   MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNST 44
           MYAKCGDP    VVF+RM LKNISTWN LIS     G                IVSWNS 
Sbjct: 186 MYAKCGDPVIAKVVFDRMTLKNISTWNALISLYMQSGQINLAASQFEKMPDRDIVSWNSM 245

[Close]
BLAST of Carg16022 vs. ExPASy TrEMBL
Match: A0A6J1IQ25 (pentatricopeptide repeat-containing protein At2g22070 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478414 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 34/63 (53.97%), Postives = 35/63 (55.56%), Query Frame = 0 

Query: 1   MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNST 44
           MYAKCGDP    VVF+RM LKNISTWN LIS     G                IVSWNS 
Sbjct: 85  MYAKCGDPVIAKVVFDRMTLKNISTWNALISLYMQSGQINLAASQFEKMPDRDIVSWNSM 144

[Close]
BLAST of Carg16022 vs. ExPASy TrEMBL
Match: A0A6J1GGT1 (pentatricopeptide repeat-containing protein At2g22070 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453771 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 34/63 (53.97%), Postives = 35/63 (55.56%), Query Frame = 0 

Query: 1   MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNST 44
           MYAKCGDP    VVF+RM LKNISTWN LIS     G                IVSWNS 
Sbjct: 85  MYAKCGDPVIAKVVFDRMTLKNISTWNALISLYMQSGQINLAASQFEKMPDRDIVSWNSM 144

[Close]
BLAST of Carg16022 vs. ExPASy TrEMBL
Match: A0A1S4DWB2 (pentatricopeptide repeat-containing protein At2g22070 OS=Cucumis melo OX=3656 GN=LOC103489437 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 33/63 (52.38%), Postives = 35/63 (55.56%), Query Frame = 0 

Query: 1   MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNST 44
           MYAKCGDP    VVF+RM +KNISTWN LIS     G                IVSWNS 
Sbjct: 186 MYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSM 245

The following BLAST results are available for this feature:
BLAST of Carg16022 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026816.11.8e-50100.00hypothetical protein SDJN02_10823, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6594852.13.5e-06100.00hypothetical protein SDJN03_11405, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023543916.13.3e-0453.97pentatricopeptide repeat-containing protein At2g22070 [Cucurbita pepo subsp. pep... [more]
XP_022950762.13.3e-0453.97pentatricopeptide repeat-containing protein At2g22070 isoform X1 [Cucurbita mosc... [more]
KAG6604009.13.3e-0453.97Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
BLAST of Carg16022 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16022 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IT291.6e-0453.97pentatricopeptide repeat-containing protein At2g22070 isoform X1 OS=Cucurbita ma... [more]
A0A6J1GFR31.6e-0453.97pentatricopeptide repeat-containing protein At2g22070 isoform X1 OS=Cucurbita mo... [more]
A0A6J1IQ251.6e-0453.97pentatricopeptide repeat-containing protein At2g22070 isoform X2 OS=Cucurbita ma... [more]
A0A6J1GGT11.6e-0453.97pentatricopeptide repeat-containing protein At2g22070 isoform X2 OS=Cucurbita mo... [more]
A0A1S4DWB23.6e-0452.38pentatricopeptide repeat-containing protein At2g22070 OS=Cucumis melo OX=3656 GN... [more]
BLAST of Carg16022 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16022-RACarg16022-RAmRNA