Carg16013 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16013
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPeptidylprolyl isomerase
LocationCarg_Chr07: 2348632 .. 2351105 (-)
RNA-Seq ExpressionCarg16013
SyntenyCarg16013
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGGCCGATACTCCGCCGCCACTCATTCAAACACTGCCGCAAAGGATCAGACAGAGCACAGTCCGATCATACTGAAATGGCGCTCTCTTCATTAACCTTCACAACCCCAAGAGCTCAGGCTTCCCAAATTTTCAGCCCCAGATTATCTTCCGCCGTTAAACCCACCCCTTGTTGTTCTTCTTCTTCTTCCTCAGTTTCTGCTGCTAAGAAGGCAATATCTAATGTGGGCATTGGGGTTCTTGCTGCTTCGGTTCTGGCTCTGTCGCCTTTGGATGCTAACGCTACCAGGATTGAATACTATGCGACTGTTGGAGAACCCCTTTGCGAGTTCAGATATGTTCCTTCCGGCCTTGGCTATTGCGACCTTGCCGTGGGATCCGGTGAGGAAGTTCCTTATAATGAGCTTATCAATGTCAGTTCCTAACTTCGATTTTGAAGTTTGTTTCTCGCTTACCATCAAATTGAAGTGCTCTTGCATTGCTTTTGTTGCAATCGCTAATTCCCTCCAATGCCTACTTTTTGCAATTTGCTAATGAAATGTTCTTCAATTGATAATCGTTTCATAAAATCATACAGGATTTTGTGAATTGTTGTGGGCTTATGTACCTTTTAAATGCAGGTTCACTACACTGCAAGGTTTGCTGATGGGATAGTGTTTGATAGCAGTTACAAGCGAGCTAGACCTCTCACCATGCGCATTGGTGTAGGCAAGGTATTTGATGAAATGTTTTGTACAGTTTCTTAAGGTAGGTTGAAAAGTGTGTACAATTTATTCGAAAGTGAGCAACTACAGCCTTTGGGAGCAATGGAGGAAAGGTCTCGGTTATCAAGATGAGAGGGTACTGAAAATTTTTCTCCTCCCATCCGCTGATTAGGAGTAAGAATGTGAGATCCCACATTGGTCGGAAAGAAGAACGAAACATTCATTATAAGGGTGTGGAAATCTTTCCCTAGTAGACGCGTTTTATAACCGTGAAGCTGATGGCGATACGAAACGGGCCAAAACAGACAATATCTGCTAGCGATGGGCTTGAGCTGTAACAAATGGTATCAAAGCCAGGCACCGAGCGGTGTGCCAACGAGGACGTTGGGTCCCCAAGGAGGGTGGATTGTGAGATCTCACATCAGTTGGAGAGGAGAACGATACATTCCTTGTAAGAGTGTGGAAACCTATCCCTAGTAGAAGTGTTTTAAAACCGTGAGGCTGACAACTATACATAACGAGCCAAAACAGACAATATCTGCTAGCGGTGGGCTTAGACTGTTACAAATGGTATCAGAGCTAGACACCGAGCAGTGTGCCAGCGAGGATGCTGGGACCTCAAGAGGGTGGATTGAGAGATACCATGTTGGTTGGAGAGGAGAACGAAACATTCCCTATAAGGATGTGGAAACCTCTACCTAGTAGATGCGTTTTAAAACCGTGAGGCTGGTGGCGACACGTAATAGACCAAAGTAGACAATATCTGTTAGCGGTGGGCTTGAGTTGTTACAAAGAAACTACTTGTAAAACCGACCCTTAATACTTGCAACCAATCTTAAAAATAGACACAATATGGATGAATAATTCATTAACTAAGTGGCTAACTACACTCATTTCCCTTTGTTGAGTAGTATGTTAAGTGGGTTTAGTTGCAAGTTTGTGACTGATTGGAAGATTAGTATTGATTAGTTTGTGACCAGGTAATAAGAGGCTTGGATCAGGGAATATTAGGAGGTGAAGGAGTACCTCCAATGCTAGTAGGTATGTCTACAGGCATAATGAGTAGGATTTTGTGGCTACTTTTACTTCTTATTGGCTTCTAAGAATCATTGCCCCGCTGATTTTGCCTAGGTGGGAAACGTAAACTTAAGATTCCTCCACATTTAGCATATGGTCCAGAGCCAGCAGGCTGCTTTTCAGGTCGAGTTCTTTAAACCAAACAGCTTTTGTTTTGAGCTTTGGCTATCTAAATCTTCATGAACATGTCTCAAATTGCCTGTGATTCCTTCTTGTAGGAATTATTACTGTAGTTTACTGTTTGGTTAATGCCATTTGTGTTGCCTTTACAGGTGACTGCAATATACCTGGAAATGCAACTCTTGTGTATGATATAAACTTCGTAGGAGTCTACTCCGGAAATAGGAAGTGAAGGAAATGATATCCATTTTCCTACAAATTTCTTGTAGATAGACAACACAGAATAAGTGAGTTTCTGACTTTTCTATTATATTCAATCATATAAACCTTCGCGTTGTTAGTTTCTCTTTGAAGTTATACTCACGACACAGCTATTTGAATACATCCCATTTCGTTTTTCTCCCACGTCAAAAAGTAGAACCACACTGATATTTGGGATATGCATCTAACAGCCCGTTACGTATCACCATCAGTTTCACGGTTCTAAAACATGTCTACTAGGGAGAGATTTCCACACCCTTATTAGGAATGTTTCGTTCCTCTATCCAACCAATGTGGGATCTCACAATGCAT

mRNA sequence

AATGGCCGATACTCCGCCGCCACTCATTCAAACACTGCCGCAAAGGATCAGACAGAGCACAGTCCGATCATACTGAAATGGCGCTCTCTTCATTAACCTTCACAACCCCAAGAGCTCAGGCTTCCCAAATTTTCAGCCCCAGATTATCTTCCGCCGTTAAACCCACCCCTTGTTGTTCTTCTTCTTCTTCCTCAGTTTCTGCTGCTAAGAAGGCAATATCTAATGTGGGCATTGGGGTTCTTGCTGCTTCGGTTCTGGCTCTGTCGCCTTTGGATGCTAACGCTACCAGGATTGAATACTATGCGACTGTTGGAGAACCCCTTTGCGAGTTCAGATATGTTCCTTCCGGCCTTGGCTATTGCGACCTTGCCGTGGGATCCGGTGAGGAAGTTCCTTATAATGAGCTTATCAATGTTCACTACACTGCAAGGTTTGCTGATGGGATAGTGTTTGATAGCAGTTACAAGCGAGCTAGACCTCTCACCATGCGCATTGGTGTAGGCAAGGTAATAAGAGGCTTGGATCAGGGAATATTAGGAGGTGAAGGAGTACCTCCAATGCTAGTAGGTGGGAAACGTAAACTTAAGATTCCTCCACATTTAGCATATGGTCCAGAGCCAGCAGGCTGCTTTTCAGGTGACTGCAATATACCTGGAAATGCAACTCTTGTGTATGATATAAACTTCGTAGGAGTCTACTCCGGAAATAGGAAGTGAAGGAAATGATATCCATTTTCCTACAAATTTCTTGTAGATAGACAACACAGAATAAGTGAGTTTCTGACTTTTCTATTATATTCAATCATATAAACCTTCGCGTTGTTAGTTTCTCTTTGAAGTTATACTCACGACACAGCTATTTGAATACATCCCATTTCGTTTTTCTCCCACGTCAAAAAGTAGAACCACACTGATATTTGGGATATGCATCTAACAGCCCGTTACGTATCACCATCAGTTTCACGGTTCTAAAACATGTCTACTAGGGAGAGATTTCCACACCCTTATTAGGAATGTTTCGTTCCTCTATCCAACCAATGTGGGATCTCACAATGCAT

Coding sequence (CDS)

ATGGCGCTCTCTTCATTAACCTTCACAACCCCAAGAGCTCAGGCTTCCCAAATTTTCAGCCCCAGATTATCTTCCGCCGTTAAACCCACCCCTTGTTGTTCTTCTTCTTCTTCCTCAGTTTCTGCTGCTAAGAAGGCAATATCTAATGTGGGCATTGGGGTTCTTGCTGCTTCGGTTCTGGCTCTGTCGCCTTTGGATGCTAACGCTACCAGGATTGAATACTATGCGACTGTTGGAGAACCCCTTTGCGAGTTCAGATATGTTCCTTCCGGCCTTGGCTATTGCGACCTTGCCGTGGGATCCGGTGAGGAAGTTCCTTATAATGAGCTTATCAATGTTCACTACACTGCAAGGTTTGCTGATGGGATAGTGTTTGATAGCAGTTACAAGCGAGCTAGACCTCTCACCATGCGCATTGGTGTAGGCAAGGTAATAAGAGGCTTGGATCAGGGAATATTAGGAGGTGAAGGAGTACCTCCAATGCTAGTAGGTGGGAAACGTAAACTTAAGATTCCTCCACATTTAGCATATGGTCCAGAGCCAGCAGGCTGCTTTTCAGGTGACTGCAATATACCTGGAAATGCAACTCTTGTGTATGATATAAACTTCGTAGGAGTCTACTCCGGAAATAGGAAGTGA

Protein sequence

MALSSLTFTTPRAQASQIFSPRLSSAVKPTPCCSSSSSSVSAAKKAISNVGIGVLAASVLALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGPEPAGCFSGDCNIPGNATLVYDINFVGVYSGNRK
Homology
BLAST of Carg16013 vs. NCBI nr
Match: KAG6594862.1 (Photosynthetic NDH subunit of lumenal location 4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026825.1 Photosynthetic NDH subunit of lumenal location 4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 422.5 bits (1085), Expect = 2.1e-114
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0

Query: 1   MALSSLTFTTPRAQASQIFSPRLSSAVKPTPCCSSSSSSVSAAKKAISNVGIGVLAASVL 60
           MALSSLTFTTPRAQASQIFSPRLSSAVKPTPCCSSSSSSVSAAKKAISNVGIGVLAASVL
Sbjct: 1   MALSSLTFTTPRAQASQIFSPRLSSAVKPTPCCSSSSSSVSAAKKAISNVGIGVLAASVL 60

Query: 61  ALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFA 120
           ALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFA
Sbjct: 61  ALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFA 120

Query: 121 DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGPE 180
           DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGPE
Sbjct: 121 DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGPE 180

Query: 181 PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 213
           PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK
Sbjct: 181 PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 212

BLAST of Carg16013 vs. NCBI nr
Match: XP_022962734.1 (photosynthetic NDH subunit of lumenal location 4, chloroplastic [Cucurbita moschata])

HSP 1 Score: 411.8 bits (1057), Expect = 3.7e-111
Identity = 208/212 (98.11%), Postives = 209/212 (98.58%), Query Frame = 0

Query: 1   MALSSLTFTTPRAQASQIFSPRLSSAVKPTPCCSSSSSSVSAAKKAISNVGIGVLAASVL 60
           MALSSLTFTTPRAQASQIFSPRLSSAVKPTPCC  SSSSVSA KKAISNVGIGVLAASVL
Sbjct: 1   MALSSLTFTTPRAQASQIFSPRLSSAVKPTPCC--SSSSVSATKKAISNVGIGVLAASVL 60

Query: 61  ALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFA 120
           ALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFA
Sbjct: 61  ALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFA 120

Query: 121 DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGPE 180
           DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKL+IPPHLAYGPE
Sbjct: 121 DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLEIPPHLAYGPE 180

Query: 181 PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 213
           PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK
Sbjct: 181 PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 210

BLAST of Carg16013 vs. NCBI nr
Match: XP_023517456.1 (photosynthetic NDH subunit of lumenal location 4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 409.5 bits (1051), Expect = 1.8e-110
Identity = 209/212 (98.58%), Postives = 209/212 (98.58%), Query Frame = 0

Query: 1   MALSSLTFTTPRAQASQIFSPRLSSAVKPTPCCSSSSSSVSAAKKAISNVGIGVLAASVL 60
           MALSSLTFTTPRAQASQIFSPRLSSAVKPTP  SSSSSSVSA KKAISNVGIGVLAASVL
Sbjct: 1   MALSSLTFTTPRAQASQIFSPRLSSAVKPTP--SSSSSSVSATKKAISNVGIGVLAASVL 60

Query: 61  ALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFA 120
           ALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFA
Sbjct: 61  ALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFA 120

Query: 121 DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGPE 180
           DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGPE
Sbjct: 121 DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGPE 180

Query: 181 PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 213
           PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK
Sbjct: 181 PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 210

BLAST of Carg16013 vs. NCBI nr
Match: XP_023003750.1 (photosynthetic NDH subunit of lumenal location 4, chloroplastic [Cucurbita maxima])

HSP 1 Score: 406.8 bits (1044), Expect = 1.2e-109
Identity = 207/213 (97.18%), Postives = 210/213 (98.59%), Query Frame = 0

Query: 1   MALSSLTFTTPRAQASQIFSPRLSSAVKPTP-CCSSSSSSVSAAKKAISNVGIGVLAASV 60
           MALSSLTFTTPRAQAS+IFSPRLSSAVKPTP   SSSSSSVSAAKKAISNVG+GVLAASV
Sbjct: 1   MALSSLTFTTPRAQASRIFSPRLSSAVKPTPTSSSSSSSSVSAAKKAISNVGVGVLAASV 60

Query: 61  LALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARF 120
           LALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARF
Sbjct: 61  LALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARF 120

Query: 121 ADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGP 180
           ADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKL+IPPHLAYGP
Sbjct: 121 ADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLEIPPHLAYGP 180

Query: 181 EPAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 213
           EPAGCFSGDCNIPGNATLVYDINFVGVYSGNRK
Sbjct: 181 EPAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 213

BLAST of Carg16013 vs. NCBI nr
Match: XP_038882610.1 (photosynthetic NDH subunit of lumenal location 4, chloroplastic [Benincasa hispida] >XP_038882611.1 photosynthetic NDH subunit of lumenal location 4, chloroplastic [Benincasa hispida] >XP_038882612.1 photosynthetic NDH subunit of lumenal location 4, chloroplastic [Benincasa hispida] >XP_038882613.1 photosynthetic NDH subunit of lumenal location 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 390.2 bits (1001), Expect = 1.1e-104
Identity = 194/212 (91.51%), Postives = 203/212 (95.75%), Query Frame = 0

Query: 1   MALSSLTFTTPRAQASQIFSPRLSSAVKPTPCCSSSSSSVSAAKKAISNVGIGVLAASVL 60
           MALSSLTFTTPRAQASQ+F+P+LSS +KPTP    SSSSVSA KKAISN+GIG+LAASVL
Sbjct: 1   MALSSLTFTTPRAQASQVFTPKLSSTLKPTP----SSSSVSATKKAISNMGIGLLAASVL 60

Query: 61  ALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFA 120
           ALSPLDANATR+EYYATVGEPLCEF Y PSGLGYCD+AVGSGEEVPY ELINVHYTARFA
Sbjct: 61  ALSPLDANATRVEYYATVGEPLCEFNYAPSGLGYCDIAVGSGEEVPYGELINVHYTARFA 120

Query: 121 DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGPE 180
           DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKL+IPPHLAYGPE
Sbjct: 121 DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLQIPPHLAYGPE 180

Query: 181 PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 213
           PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK
Sbjct: 181 PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 208

BLAST of Carg16013 vs. ExPASy Swiss-Prot
Match: Q9SCY3 (Photosynthetic NDH subunit of lumenal location 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL4 PE=1 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 4.0e-76
Identity = 145/216 (67.13%), Postives = 173/216 (80.09%), Query Frame = 0

Query: 1   MALSSLTFTTPRAQASQIFSPRL---SSAVKPTPCCSSSSSSVS---AAKKAISNVGIGV 60
           MA+S+LT T  ++  ++ F P +   SS+     C  SSSS      + KK +  VG+G 
Sbjct: 1   MAISTLTLT--QSLYTRSFRPTIFFSSSSSSSFSCLCSSSSDCEPKLSVKKRVFGVGLGF 60

Query: 61  LAASVLALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVH 120
           LA+S+L+L+PLDA+ATRI+YYATVG+PLCE+ Y  SGLG+CDL VG G+E P   L+N+H
Sbjct: 61  LASSILSLTPLDADATRIDYYATVGDPLCEYSYAKSGLGFCDLDVGFGDEAPRGVLVNIH 120

Query: 121 YTARFADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPH 180
           YTARFADG +FDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPM VGGKRKL+IPP 
Sbjct: 121 YTARFADGTLFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMRVGGKRKLQIPPK 180

Query: 181 LAYGPEPAGCFSGDCNIPGNATLVYDINFVGVYSGN 211
           LAYGPEPAGCFSGDCNIPGNATL+YDINFV +Y G+
Sbjct: 181 LAYGPEPAGCFSGDCNIPGNATLLYDINFVEIYPGS 214

BLAST of Carg16013 vs. ExPASy Swiss-Prot
Match: Q9SCY2 (Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FKBP13 PE=1 SV=2)

HSP 1 Score: 156.8 bits (395), Expect = 2.8e-37
Identity = 70/123 (56.91%), Postives = 85/123 (69.11%), Query Frame = 0

Query: 83  CEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFADGIVFDSSYKRARPLTMRIGVG 142
           CEF   PSGL +CD  VG G E    +LI  HY  +  +G VFDSSY R +PLT RIGVG
Sbjct: 84  CEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVG 143

Query: 143 KVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGPEPAGCFSGDCNIPGNATLVYDIN 202
           +VI+G DQGILG +G+PPML GGKR L+IPP LAYG   AGC  G C IP  + L++DI 
Sbjct: 144 EVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIE 203

Query: 203 FVG 206
           ++G
Sbjct: 204 YIG 206

BLAST of Carg16013 vs. ExPASy Swiss-Prot
Match: Q6CGG3 (FK506-binding protein 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=FPR2 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.2e-17
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 0

Query: 109 ELINVHYTARFADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRK 168
           + ++VHYT +  DG VFDSS +R +P+   +G G+VI G DQGILG      M VG KRK
Sbjct: 49  DTVSVHYTGKLEDGTVFDSSVERGQPIQFPLGTGRVIPGWDQGILG------MCVGEKRK 108

Query: 169 LKIPPHLAYGPEPAGCFSGDCNIPGNATLVYDINFVGV 207
           L IPPHLAYG + AG       IP ++TL++    V +
Sbjct: 109 LTIPPHLAYGKQGAGRV-----IPPDSTLIFTTELVSI 135

BLAST of Carg16013 vs. ExPASy Swiss-Prot
Match: Q41649 (FK506-binding protein 2 OS=Vicia faba OX=3906 GN=FKBP15 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-17
Identity = 52/131 (39.69%), Postives = 70/131 (53.44%), Query Frame = 0

Query: 76  ATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFADGIVFDSSYKRARPL 135
           A V E     +Y P+    C++    G++V       VHY  +  DG VFDSS++R  P+
Sbjct: 26  ADVTELQIGVKYKPAS---CEVQAHKGDKV------KVHYRGKLTDGTVFDSSFERNSPI 85

Query: 136 TMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGPEPAGCFSGDCNIPGNA 195
              +G G+VI+G DQG+LG      M +G KRKLKIP  L YG +          IPG A
Sbjct: 86  DFELGGGQVIKGWDQGLLG------MCLGEKRKLKIPAKLGYGEQ-----GSPPTIPGGA 136

Query: 196 TLVYDINFVGV 207
           TL++D   VGV
Sbjct: 146 TLIFDTELVGV 136

BLAST of Carg16013 vs. ExPASy Swiss-Prot
Match: Q54SR7 (FK506-binding protein 2 OS=Dictyostelium discoideum OX=44689 GN=fkbp2 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.1e-17
Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = 0

Query: 95  CDLAVGSGEEVPYNELINVHYTARFADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILG 154
           C +   SG++      + +HYT    +G  FDSS  R  P   +IGVG+VI+G DQG+LG
Sbjct: 38  CTVKTKSGDK------LKIHYTGTLLNGDKFDSSVDRGTPFEFKIGVGQVIKGWDQGVLG 97

Query: 155 GEGVPPMLVGGKRKLKIPPHLAYGPEPAGCFSGDCNIPGNATLVYDINFVGV 207
                 M VG KRKL IPP L YG + AG       IPGN+ L++D+  +G+
Sbjct: 98  ------MCVGEKRKLIIPPSLGYGQQGAG-----DKIPGNSHLIFDVELIGI 132

BLAST of Carg16013 vs. ExPASy TrEMBL
Match: A0A6J1HHY0 (Peptidylprolyl isomerase OS=Cucurbita moschata OX=3662 GN=LOC111463138 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 1.8e-111
Identity = 208/212 (98.11%), Postives = 209/212 (98.58%), Query Frame = 0

Query: 1   MALSSLTFTTPRAQASQIFSPRLSSAVKPTPCCSSSSSSVSAAKKAISNVGIGVLAASVL 60
           MALSSLTFTTPRAQASQIFSPRLSSAVKPTPCC  SSSSVSA KKAISNVGIGVLAASVL
Sbjct: 1   MALSSLTFTTPRAQASQIFSPRLSSAVKPTPCC--SSSSVSATKKAISNVGIGVLAASVL 60

Query: 61  ALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFA 120
           ALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFA
Sbjct: 61  ALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFA 120

Query: 121 DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGPE 180
           DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKL+IPPHLAYGPE
Sbjct: 121 DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLEIPPHLAYGPE 180

Query: 181 PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 213
           PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK
Sbjct: 181 PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 210

BLAST of Carg16013 vs. ExPASy TrEMBL
Match: A0A6J1KSN7 (Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111497240 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 5.7e-110
Identity = 207/213 (97.18%), Postives = 210/213 (98.59%), Query Frame = 0

Query: 1   MALSSLTFTTPRAQASQIFSPRLSSAVKPTP-CCSSSSSSVSAAKKAISNVGIGVLAASV 60
           MALSSLTFTTPRAQAS+IFSPRLSSAVKPTP   SSSSSSVSAAKKAISNVG+GVLAASV
Sbjct: 1   MALSSLTFTTPRAQASRIFSPRLSSAVKPTPTSSSSSSSSVSAAKKAISNVGVGVLAASV 60

Query: 61  LALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARF 120
           LALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARF
Sbjct: 61  LALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARF 120

Query: 121 ADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGP 180
           ADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKL+IPPHLAYGP
Sbjct: 121 ADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLEIPPHLAYGP 180

Query: 181 EPAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 213
           EPAGCFSGDCNIPGNATLVYDINFVGVYSGNRK
Sbjct: 181 EPAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 213

BLAST of Carg16013 vs. ExPASy TrEMBL
Match: A0A1S3B1J6 (Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103484993 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 4.7e-104
Identity = 195/212 (91.98%), Postives = 203/212 (95.75%), Query Frame = 0

Query: 1   MALSSLTFTTPRAQASQIFSPRLSSAVKPTPCCSSSSSSVSAAKKAISNVGIGVLAASVL 60
           MALS LTFTTPRAQASQIF+P+LSS VKPT   +SS SSVSA KKAISN+GIG+LAASVL
Sbjct: 1   MALSPLTFTTPRAQASQIFTPKLSSTVKPT--STSSYSSVSATKKAISNMGIGLLAASVL 60

Query: 61  ALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFA 120
           ALSPLDANATRIEYYATVGEPLCEF YVPSGLGYCD+AVGSGEEVPY ELINVHYTARF+
Sbjct: 61  ALSPLDANATRIEYYATVGEPLCEFNYVPSGLGYCDIAVGSGEEVPYGELINVHYTARFS 120

Query: 121 DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGPE 180
           DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKL+IPPHLAYGPE
Sbjct: 121 DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLQIPPHLAYGPE 180

Query: 181 PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 213
           PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK
Sbjct: 181 PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 210

BLAST of Carg16013 vs. ExPASy TrEMBL
Match: A0A5A7T4H4 (Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002610 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 4.7e-104
Identity = 195/212 (91.98%), Postives = 203/212 (95.75%), Query Frame = 0

Query: 1   MALSSLTFTTPRAQASQIFSPRLSSAVKPTPCCSSSSSSVSAAKKAISNVGIGVLAASVL 60
           MALS LTFTTPRAQASQIF+P+LSS VKPT   +SS SSVSA KKAISN+GIG+LAASVL
Sbjct: 1   MALSPLTFTTPRAQASQIFTPKLSSTVKPT--STSSYSSVSATKKAISNMGIGLLAASVL 60

Query: 61  ALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFA 120
           ALSPLDANATRIEYYATVGEPLCEF YVPSGLGYCD+AVGSGEEVPY ELINVHYTARF+
Sbjct: 61  ALSPLDANATRIEYYATVGEPLCEFNYVPSGLGYCDIAVGSGEEVPYGELINVHYTARFS 120

Query: 121 DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGPE 180
           DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKL+IPPHLAYGPE
Sbjct: 121 DGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLQIPPHLAYGPE 180

Query: 181 PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 213
           PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK
Sbjct: 181 PAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 210

BLAST of Carg16013 vs. ExPASy TrEMBL
Match: A0A0A0KGU0 (Peptidylprolyl isomerase OS=Cucumis sativus OX=3659 GN=Csa_6G500650 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 7.5e-102
Identity = 196/226 (86.73%), Postives = 201/226 (88.94%), Query Frame = 0

Query: 1   MALSSLTFTTPRAQASQIFSPRLSSAVKPT--------------PCCSSSSSSVSAAKKA 60
           MALS LTFTTPR QASQIFSP+LSS VKPT                 SSSSSSVSA KKA
Sbjct: 56  MALSPLTFTTPRPQASQIFSPKLSSTVKPTSTSSSSSSSSSSSSSSSSSSSSSVSATKKA 115

Query: 61  ISNVGIGVLAASVLALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVP 120
           ISN+GIG+LAASVLALSPLDANATRIEYYATVGEPLCEF YVPSGLGYCD+AVGSGEEVP
Sbjct: 116 ISNMGIGLLAASVLALSPLDANATRIEYYATVGEPLCEFNYVPSGLGYCDIAVGSGEEVP 175

Query: 121 YNELINVHYTARFADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGK 180
           Y ELINVHYTARFADGIVFDSSYKR R LTMRIGVGKVIRGLDQGILGGEGVPPMLVGGK
Sbjct: 176 YGELINVHYTARFADGIVFDSSYKRGRYLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGK 235

Query: 181 RKLKIPPHLAYGPEPAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 213
           RKL+IPPHLAYGPEPAGCFSGDCNIPGNATLVYDINFVGVYSGNRK
Sbjct: 236 RKLQIPPHLAYGPEPAGCFSGDCNIPGNATLVYDINFVGVYSGNRK 281

BLAST of Carg16013 vs. TAIR 10
Match: AT4G39710.1 (FK506-binding protein 16-2 )

HSP 1 Score: 285.8 bits (730), Expect = 2.8e-77
Identity = 145/216 (67.13%), Postives = 173/216 (80.09%), Query Frame = 0

Query: 1   MALSSLTFTTPRAQASQIFSPRL---SSAVKPTPCCSSSSSSVS---AAKKAISNVGIGV 60
           MA+S+LT T  ++  ++ F P +   SS+     C  SSSS      + KK +  VG+G 
Sbjct: 1   MAISTLTLT--QSLYTRSFRPTIFFSSSSSSSFSCLCSSSSDCEPKLSVKKRVFGVGLGF 60

Query: 61  LAASVLALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVH 120
           LA+S+L+L+PLDA+ATRI+YYATVG+PLCE+ Y  SGLG+CDL VG G+E P   L+N+H
Sbjct: 61  LASSILSLTPLDADATRIDYYATVGDPLCEYSYAKSGLGFCDLDVGFGDEAPRGVLVNIH 120

Query: 121 YTARFADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRKLKIPPH 180
           YTARFADG +FDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPM VGGKRKL+IPP 
Sbjct: 121 YTARFADGTLFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMRVGGKRKLQIPPK 180

Query: 181 LAYGPEPAGCFSGDCNIPGNATLVYDINFVGVYSGN 211
           LAYGPEPAGCFSGDCNIPGNATL+YDINFV +Y G+
Sbjct: 181 LAYGPEPAGCFSGDCNIPGNATLLYDINFVEIYPGS 214

BLAST of Carg16013 vs. TAIR 10
Match: AT4G39710.2 (FK506-binding protein 16-2 )

HSP 1 Score: 194.9 bits (494), Expect = 6.6e-50
Identity = 104/167 (62.28%), Postives = 128/167 (76.65%), Query Frame = 0

Query: 1   MALSSLTFTTPRAQASQIFSPRL---SSAVKPTPCCSSSSSSVS---AAKKAISNVGIGV 60
           MA+S+LT T  ++  ++ F P +   SS+     C  SSSS      + KK +  VG+G 
Sbjct: 1   MAISTLTLT--QSLYTRSFRPTIFFSSSSSSSFSCLCSSSSDCEPKLSVKKRVFGVGLGF 60

Query: 61  LAASVLALSPLDANATRIEYYATVGEPLCEFRYVPSGLGYCDLAVGSGEEVPYNELINVH 120
           LA+S+L+L+PLDA+ATRI+YYATVG+PLCE+ Y  SGLG+CDL VG G+E P   L+N+H
Sbjct: 61  LASSILSLTPLDADATRIDYYATVGDPLCEYSYAKSGLGFCDLDVGFGDEAPRGVLVNIH 120

Query: 121 YTARFADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPM 162
           YTARFADG +FDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPM
Sbjct: 121 YTARFADGTLFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPM 165

BLAST of Carg16013 vs. TAIR 10
Match: AT5G45680.1 (FK506-binding protein 13 )

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-38
Identity = 70/123 (56.91%), Postives = 85/123 (69.11%), Query Frame = 0

Query: 83  CEFRYVPSGLGYCDLAVGSGEEVPYNELINVHYTARFADGIVFDSSYKRARPLTMRIGVG 142
           CEF   PSGL +CD  VG G E    +LI  HY  +  +G VFDSSY R +PLT RIGVG
Sbjct: 84  CEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVG 143

Query: 143 KVIRGLDQGILGGEGVPPMLVGGKRKLKIPPHLAYGPEPAGCFSGDCNIPGNATLVYDIN 202
           +VI+G DQGILG +G+PPML GGKR L+IPP LAYG   AGC  G C IP  + L++DI 
Sbjct: 144 EVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIE 203

Query: 203 FVG 206
           ++G
Sbjct: 204 YIG 206

BLAST of Carg16013 vs. TAIR 10
Match: AT3G25220.1 (FK506-binding protein 15 kD-1 )

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-17
Identity = 48/112 (42.86%), Postives = 59/112 (52.68%), Query Frame = 0

Query: 95  CDLAVGSGEEVPYNELINVHYTARFADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILG 154
           CDL    G++      I VHY  +  DG VFDSS++R  P+   +G G+VI G DQG+LG
Sbjct: 45  CDLQAHKGDK------IKVHYRGKLTDGTVFDSSFERGDPIEFELGTGQVIPGWDQGLLG 104

Query: 155 GEGVPPMLVGGKRKLKIPPHLAYGPEPAGCFSGDCNIPGNATLVYDINFVGV 207
                   VG KRKLKIP  L YG            IPG ATL++D   V V
Sbjct: 105 A------CVGEKRKLKIPSKLGYGDN-----GSPPKIPGGATLIFDTELVAV 139

BLAST of Carg16013 vs. TAIR 10
Match: AT5G48580.1 (FK506- and rapamycin-binding protein 15 kD-2 )

HSP 1 Score: 84.7 bits (208), Expect = 9.6e-17
Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = 0

Query: 109 ELINVHYTARFADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMLVGGKRK 168
           + I VHY  +  DG VFDSS++R  P   ++G G+VI+G DQG+LG        VG KRK
Sbjct: 53  DTIKVHYRGKLTDGTVFDSSFERGDPFEFKLGSGQVIKGWDQGLLGA------CVGEKRK 112

Query: 169 LKIPPHLAYGPEPAGCFSGDCNIPGNATLVYDINFVGV 207
           LKIP  L YG +          IPG ATL++D   + V
Sbjct: 113 LKIPAKLGYGEQ-----GSPPTIPGGATLIFDTELIAV 139

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6594862.12.1e-114100.00Photosynthetic NDH subunit of lumenal location 4, chloroplastic, partial [Cucurb... [more]
XP_022962734.13.7e-11198.11photosynthetic NDH subunit of lumenal location 4, chloroplastic [Cucurbita mosch... [more]
XP_023517456.11.8e-11098.58photosynthetic NDH subunit of lumenal location 4, chloroplastic [Cucurbita pepo ... [more]
XP_023003750.11.2e-10997.18photosynthetic NDH subunit of lumenal location 4, chloroplastic [Cucurbita maxim... [more]
XP_038882610.11.1e-10491.51photosynthetic NDH subunit of lumenal location 4, chloroplastic [Benincasa hispi... [more]
Match NameE-valueIdentityDescription
Q9SCY34.0e-7667.13Photosynthetic NDH subunit of lumenal location 4, chloroplastic OS=Arabidopsis t... [more]
Q9SCY22.8e-3756.91Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic OS=Arabidopsis thalian... [more]
Q6CGG33.2e-1746.94FK506-binding protein 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=2845... [more]
Q416494.2e-1739.69FK506-binding protein 2 OS=Vicia faba OX=3906 GN=FKBP15 PE=1 SV=1[more]
Q54SR77.1e-1741.96FK506-binding protein 2 OS=Dictyostelium discoideum OX=44689 GN=fkbp2 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1HHY01.8e-11198.11Peptidylprolyl isomerase OS=Cucurbita moschata OX=3662 GN=LOC111463138 PE=4 SV=1[more]
A0A6J1KSN75.7e-11097.18Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111497240 PE=4 SV=1[more]
A0A1S3B1J64.7e-10491.98Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103484993 PE=4 SV=1[more]
A0A5A7T4H44.7e-10491.98Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A0A0KGU07.5e-10286.73Peptidylprolyl isomerase OS=Cucumis sativus OX=3659 GN=Csa_6G500650 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G39710.12.8e-7767.13FK506-binding protein 16-2 [more]
AT4G39710.26.6e-5062.28FK506-binding protein 16-2 [more]
AT5G45680.12.0e-3856.91FK506-binding protein 13 [more]
AT3G25220.12.5e-1742.86FK506-binding protein 15 kD-1 [more]
AT5G48580.19.6e-1743.88FK506- and rapamycin-binding protein 15 kD-2 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001179FKBP-type peptidyl-prolyl cis-trans isomerase domainPFAMPF00254FKBP_Ccoord: 108..202
e-value: 4.6E-24
score: 84.5
IPR001179FKBP-type peptidyl-prolyl cis-trans isomerase domainPROSITEPS50059FKBP_PPIASEcoord: 108..207
score: 23.892782
NoneNo IPR availableGENE3D3.10.50.40coord: 81..206
e-value: 2.2E-40
score: 139.8
NoneNo IPR availableSUPERFAMILY54534FKBP-likecoord: 85..206
IPR044183Photosynthetic NDH subunit of lumenal location 4-likePANTHERPTHR47833PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTICcoord: 1..212

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16013-RACarg16013-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000413 protein peptidyl-prolyl isomerization
cellular_component GO:0009507 chloroplast
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity