Carg16006 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGTGTTCTTTTTCCGATTAAGCAAATTCAATGTTTTCCCGGTTCCCTCAAAGTTTGTAAAATTTTGGCATTCAACGTTCTCCAAATCTGCAGAACATCGTGGCCATCGCATTTGGGATCAATAATTTACCATCTCTTTTGCTTCTCTGCTTCGAGTAAATCGGATCACCGGCGTGAGTTTGATCAGTCACTCATTCTTTCGTATACAAAATGGCTACAATCTCTTCGTTCTTCTTGATTCTTTTCCTACATTTGGGTGTTTACTATATTGTTGTGCGTATTCTTTGTGTTCTATCGATTTCAAACGTTTTTTCATCTTCTTGTGGAGTGACACTATATTTCCCAATTGAAATCTGTTGGCTGTTCGCGAACTAGAATATTTCTCTCGTGCTTAAATCTAATATTTGGTTATTGGTATGTTCTGGGTTATCAGCATGATTTCTTCAGGATTTCTCGAGTTCAATGGAGCAGTGCAAGTTTATAATCATGCCTGTGATTCAAATCCTCATAATGTCTCTTTGATTTCTCTACCGGTTATCCGGAAGGGTTTTGATTCTGATGTACGGCTGTTTAGAAGAGGGATTTGTAGTATGAGAAATTTCAGGCTTTCAGATGTTTGTGCGACCCCGCAAGTTTCAATTATGAACCACATTACACCTGTTTCGGATTGGAATAGTGATGATTCTATGAGGCCATCCAGTAAGTCTGATTACCTATTAGGAATAATGGCTTCTAATCTTTTATTGGTTCCCAGGAGATTGAATTTCTTTGTAATGTCCATGAACTTTCCTCTTTAAAGTTGAAACAGCTCTGATATTAATTCGACATGGTGAGTCAATGTGGAATGAGAAGAATTTATTTACTGGCTCTGTTGATGTACCTTTAACAAGAAGAGGTGTAGAGGAAGCAATTGAAGCTGGTAAGAGGATCAGCAACCTACCGATTGACTACGTTTACACGTCTGCGTTAATTCGCTCACAAATGACAGCGGTGCTTGCTTTGATTCAACATCGCTGCAAAAAGGTGTATATCATGCATGGTGTTTTTTGTTCCTGCATCATAAAAAGTGGATAGCCTTTGATTAGCTTCTAGTCCTGAGTTTGATGAATTCAGAACTGCATACTAGTTGCTCAAGATGGTTGTAAGTTTGTAATATGAGGATGCATCTGCAAATTCCTTTCATTCCCATTAAGGAATTCTTATCATTGGGTGAGAAGATTTTGTTGTTTAGAATACAGAGTTCAAGCTAATATTTAGAGGAAAATGGATGTTATTTTGATTGAAGTTTGATTGTTGTTTTTTAAACATTCCATAGCAGAAAATGGATGTTTCTAATTTAGACCATTTTATGCTTTCAGGTGCCCATCATTATCCATAATTGTAATGAACAGGCAGAGGCATGGAGCCAAATTTACAGTGATGAGGCTAGAAAGCAATCATTTCCGGTTATTAGAGCTTGGCAATTGAATGAAAGAATGTACTTTCTCTTTTCATGGGAATCTATATTTTCCTTCTATCTGAAGACTATACTGTTGTTTTGATGCACAAAACTATAATACAGGTATGGTGAGCTACAGGGACTGAATAAACAGGAGATTGCCAAAAGATATGGTGAAGAGCAAGTGCATGAATGGCGCCGGAGTTACGAAATTCCTCCGCCCGAGGGTGAGAGCTTGCAGATGTGCTCACAAAGAGCAGTTGGATATTTTAAAGAGCATGTAAGCACTCTTGGATTCTTGTTTTGATTATTTGAAACGGTAAGATTCTCACAGGGCAAGAAGGAATTGTAGATTGAACCACATCTGCAATCTGGGAAACATGTTATGGTTGCAGCCCATGCTAATACGCTAAGGTCTATTATCATGTACCTAGAAAAATTAACTTCTCGCCAGGTAGAGAGACCATATCCTACATGTTTTTCTTCAGTGTTCATGTTGCTACCTTCTAGTATAGCTTATTAATGAATGAATATTTGCTAGGAGACAGGTAATTGGGTTGGAAGTATCAACTGGGGTACCATTACTTTACATATACAAGGAGGGAACGTTTATGAAGCGAGGGAGTCCTGTCGGTTCTTCCGAAGCTGGCGTATATGCACTAACTAGGGCAAGAATATTCTACCTCTCCATCATCTTATGTTTATAATTTACTGGTATCCTGATATTTGCTTGTAGAAATTCAAGAGTCATTTTCCTTGATTGCTTTGTTGCTCATTGATTGTGATGAAAATGGAGGAAAGAACAAAATAGTTGTTGCTGTGGTCTACTAAGAGGAAAAATATCCAAAGAATAATTAGGGTCTTTGATAAACTGTTCTTTGATATTGGTTCTTCAGTGACCATAGACGTTTGGCGACGAGTGCATAGATTACAACATAATTTAACCATTAATCTGCGGTACAAGTGTAATGACTCAAACCCACCGCTATCAGATATTGTTCTCTTTAGGCTTTCCCTCAAGATTTTTAAAACGTGTTTGGTAGGGAGGTTTTCACACCCTTATCCCCTCTCCAACCGACGTGGGTTCTCACAATCCACTCCCCTTGGGGCCTGGCGTTTTCGCTGGTACGCCGCTCGGTGTCTGGCTCTAATACCATTTGTAATGGCTCAAACCCACCACTAGCGAATATTGTCCTCTTTGGGGTTTCCCTTTCGAGATTTCCCTCAAAGTTTTTAAATGCATTTGGTAGGGAAAGGTTTCTACACCCTTATCCCCTCTCCAACCGTTGTGGGATCTCAAAACAAGTGCTTATCTGAACTTGGCTATGGAATATTGCCACAAGCTAACACTGTATTATCCAAATGAGTTCTTTTCTAATCTAAAAGTTTGTGTTCAACCATCTTGATCTTAGATGTCAACTCCAAACAATTAAAAGCTTAAAAGGAATAAACAGAGGACTGCTACATGTTCTGTCTATCTTTCTCTACGCAATCACTTGATTGATTAGCATCTGCCCACTTCCTATTATCTTATGCAGAATTTAGCACTTTACAGGCAAAAGTTGGACGAAATGTCATGCTGAATCCCTGAAATTCAGGTAAGAATATTTCGACTTGTTAGATTATTACCACTCAAGAGTATGATTGAAAACAAGGTTACTGCTTTTTTGATGTTGCAAATGAACTAGGAAACCGATCGACTTACCGGCTCGTGCTTCTTGTTGTTCTAAACCCAGATAGCTTATACTAATTACGGATTGTTTGTTGCTTGTATATGTTTCTATGGGATAGTGATCAATGTGTTCTTCAGTGTTATTGTTGAAGGTTATCTGCAGCGGGCATACCCACTTCCTGGAAAGACAAGGAGATGCATTCCACAAAAGCCACAGATACAAGTTTCCATCTTTTAGTATGGAAGATGATTTTAATTTTTCATTTATGTTTCATCC AGTGTTCTTTTTCCGATTAAGCAAATTCAATGTTTTCCCGGTTCCCTCAAAGTTTGTAAAATTTTGGCATTCAACGTTCTCCAAATCTGCAGAACATCGTGGCCATCGCATTTGGGATCAATAATTTACCATCTCTTTTGCTTCTCTGCTTCGAGTAAATCGGATCACCGGCGTGAGTTTGATCAGTCACTCATTCTTTCGTATACAAAATGGCTACAATCTCTTCGTTCTTCTTGATTCTTTTCCTACATTTGGGTGTTTACTATATTGTTGTGCGTATTCTTTGTGTTCTATCGATTTCAAACGTTTTTTCATCTTCTTGTGGAGTGACACTATATTTCCCAATTGAAATCTGTTGGCTGTTCGCGAACTAGAATATTTCTCTCGTGCTTAAATCTAATATTTGGTTATTGGTATGTTCTGGGTTATCAGCATGATTTCTTCAGGATTTCTCGAGTTCAATGGAGCAGTGCAAGTTTATAATCATGCCTGTGATTCAAATCCTCATAATGTCTCTTTGATTTCTCTACCGGTTATCCGGAAGGGTTTTGATTCTGATGTACGGCTGTTTAGAAGAGGGATTTGTAGTATGAGAAATTTCAGGCTTTCAGATGTTTGTGCGACCCCGCAAGTTTCAATTATGAACCACATTACACCTGTTTCGGATTGGAATAGTGATGATTCTATGAGGCCATCCATTGAAACAGCTCTGATATTAATTCGACATGGTGAGTCAATGTGGAATGAGAAGAATTTATTTACTGGCTCTGTTGATGTACCTTTAACAAGAAGAGGTGTAGAGGAAGCAATTGAAGCTGGTAAGAGGATCAGCAACCTACCGATTGACTACGTTTACACGTCTGCGTTAATTCGCTCACAAATGACAGCGGTGCTTGCTTTGATTCAACATCGCTGCAAAAAGGTGCCCATCATTATCCATAATTGTAATGAACAGGCAGAGGCATGGAGCCAAATTTACAGTGATGAGGCTAGAAAGCAATCATTTCCGGTTATTAGAGCTTGGCAATTGAATGAAAGAATGTATGGTGAGCTACAGGGACTGAATAAACAGGAGATTGCCAAAAGATATGGTGAAGAGCAAGTGCATGAATGGCGCCGGAGTTACGAAATTCCTCCGCCCGAGGGTGAGAGCTTGCAGATGTGCTCACAAAGAGCAGTTGGATATTTTAAAGAGCATATTGAACCACATCTGCAATCTGGGAAACATGTTATGGTTGCAGCCCATGCTAATACGCTAAGGTCTATTATCATGTACCTAGAAAAATTAACTTCTCGCCAGGAGACAGGTAATTGGGTTGGAAGTATCAACTGGGGTACCATTACTTTACATATACAAGGAGGGAACGTTTATGAAGCGAGGGAGTCCTGTCGGTTCTTCCGAAGCTGGCGTATATGCACTAACTAGGAATTTAGCACTTTACAGGCAAAAGTTGGACGAAATGTCATGCTGAATCCCTGAAATTCAGTGTTATTGTTGAAGGTTATCTGCAGCGGGCATACCCACTTCCTGGAAAGACAAGGAGATGCATTCCACAAAAGCCACAGATACAAGTTTCCATCTTTTAGTATGGAAGATGATTTTAATTTTTCATTTATGTTTCATCC ATGTTCTGGGTTATCAGCATGATTTCTTCAGGATTTCTCGAGTTCAATGGAGCAGTGCAAGTTTATAATCATGCCTGTGATTCAAATCCTCATAATGTCTCTTTGATTTCTCTACCGGTTATCCGGAAGGGTTTTGATTCTGATGTACGGCTGTTTAGAAGAGGGATTTGTAGTATGAGAAATTTCAGGCTTTCAGATGTTTGTGCGACCCCGCAAGTTTCAATTATGAACCACATTACACCTGTTTCGGATTGGAATAGTGATGATTCTATGAGGCCATCCATTGAAACAGCTCTGATATTAATTCGACATGGTGAGTCAATGTGGAATGAGAAGAATTTATTTACTGGCTCTGTTGATGTACCTTTAACAAGAAGAGGTGTAGAGGAAGCAATTGAAGCTGGTAAGAGGATCAGCAACCTACCGATTGACTACGTTTACACGTCTGCGTTAATTCGCTCACAAATGACAGCGGTGCTTGCTTTGATTCAACATCGCTGCAAAAAGGTGCCCATCATTATCCATAATTGTAATGAACAGGCAGAGGCATGGAGCCAAATTTACAGTGATGAGGCTAGAAAGCAATCATTTCCGGTTATTAGAGCTTGGCAATTGAATGAAAGAATGTATGGTGAGCTACAGGGACTGAATAAACAGGAGATTGCCAAAAGATATGGTGAAGAGCAAGTGCATGAATGGCGCCGGAGTTACGAAATTCCTCCGCCCGAGGGTGAGAGCTTGCAGATGTGCTCACAAAGAGCAGTTGGATATTTTAAAGAGCATATTGAACCACATCTGCAATCTGGGAAACATGTTATGGTTGCAGCCCATGCTAATACGCTAAGGTCTATTATCATGTACCTAGAAAAATTAACTTCTCGCCAGGAGACAGGTAATTGGGTTGGAAGTATCAACTGGGGTACCATTACTTTACATATACAAGGAGGGAACGTTTATGAAGCGAGGGAGTCCTGTCGGTTCTTCCGAAGCTGGCGTATATGCACTAACTAG MFWVISMISSGFLEFNGAVQVYNHACDSNPHNVSLISLPVIRKGFDSDVRLFRRGICSMRNFRLSDVCATPQVSIMNHITPVSDWNSDDSMRPSIETALILIRHGESMWNEKNLFTGSVDVPLTRRGVEEAIEAGKRISNLPIDYVYTSALIRSQMTAVLALIQHRCKKVPIIIHNCNEQAEAWSQIYSDEARKQSFPVIRAWQLNERMYGELQGLNKQEIAKRYGEEQVHEWRRSYEIPPPEGESLQMCSQRAVGYFKEHIEPHLQSGKHVMVAAHANTLRSIIMYLEKLTSRQETGNWVGSINWGTITLHIQGGNVYEARESCRFFRSWRICTN Homology
BLAST of Carg16006 vs. NCBI nr
Match: KAG7026832.1 (hypothetical protein SDJN02_10839 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 694.9 bits (1792), Expect = 3.4e-196 Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 0
BLAST of Carg16006 vs. NCBI nr
Match: XP_022963320.1 (uncharacterized protein LOC111463561 isoform X3 [Cucurbita moschata]) HSP 1 Score: 692.2 bits (1785), Expect = 2.2e-195 Identity = 335/336 (99.70%), Postives = 335/336 (99.70%), Query Frame = 0
BLAST of Carg16006 vs. NCBI nr
Match: XP_023518829.1 (uncharacterized protein LOC111782226 isoform X4 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 680.2 bits (1754), Expect = 8.8e-192 Identity = 330/336 (98.21%), Postives = 332/336 (98.81%), Query Frame = 0
BLAST of Carg16006 vs. NCBI nr
Match: XP_023004019.1 (uncharacterized protein LOC111497455 isoform X3 [Cucurbita maxima]) HSP 1 Score: 667.2 bits (1720), Expect = 7.7e-188 Identity = 324/333 (97.30%), Postives = 329/333 (98.80%), Query Frame = 0
BLAST of Carg16006 vs. NCBI nr
Match: XP_022963314.1 (uncharacterized protein LOC111463561 isoform X1 [Cucurbita moschata] >XP_022963315.1 uncharacterized protein LOC111463561 isoform X1 [Cucurbita moschata]) HSP 1 Score: 603.6 bits (1555), Expect = 1.0e-168 Identity = 296/298 (99.33%), Postives = 296/298 (99.33%), Query Frame = 0
BLAST of Carg16006 vs. ExPASy Swiss-Prot
Match: Q9LM13 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1 OS=Arabidopsis thaliana OX=3702 GN=gpmA1 PE=2 SV=1) HSP 1 Score: 327.8 bits (839), Expect = 1.4e-88 Identity = 156/223 (69.96%), Postives = 193/223 (86.55%), Query Frame = 0
BLAST of Carg16006 vs. ExPASy Swiss-Prot
Match: F4I8M8 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2 OS=Arabidopsis thaliana OX=3702 GN=gpmA2 PE=2 SV=1) HSP 1 Score: 315.1 bits (806), Expect = 9.7e-85 Identity = 152/241 (63.07%), Postives = 197/241 (81.74%), Query Frame = 0
BLAST of Carg16006 vs. ExPASy Swiss-Prot
Match: Q6MEW4 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Protochlamydia amoebophila (strain UWE25) OX=264201 GN=gpmA PE=3 SV=1) HSP 1 Score: 258.5 bits (659), Expect = 1.1e-67 Identity = 119/197 (60.41%), Postives = 157/197 (79.70%), Query Frame = 0
BLAST of Carg16006 vs. ExPASy Swiss-Prot
Match: Q9PLK4 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydia muridarum (strain MoPn / Nigg) OX=243161 GN=gpmA PE=3 SV=1) HSP 1 Score: 229.6 bits (584), Expect = 5.4e-59 Identity = 109/199 (54.77%), Postives = 154/199 (77.39%), Query Frame = 0
BLAST of Carg16006 vs. ExPASy Swiss-Prot
Match: B0BAH7 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) OX=471473 GN=gpmA PE=3 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 4.5e-58 Identity = 110/199 (55.28%), Postives = 150/199 (75.38%), Query Frame = 0
BLAST of Carg16006 vs. ExPASy TrEMBL
Match: A0A6J1HHN4 (Phosphoglycerate mutase (2,3-diphosphoglycerate-dependent) OS=Cucurbita moschata OX=3662 GN=LOC111463561 PE=3 SV=1) HSP 1 Score: 692.2 bits (1785), Expect = 1.1e-195 Identity = 335/336 (99.70%), Postives = 335/336 (99.70%), Query Frame = 0
BLAST of Carg16006 vs. ExPASy TrEMBL
Match: A0A6J1KV01 (Phosphoglycerate mutase (2,3-diphosphoglycerate-dependent) OS=Cucurbita maxima OX=3661 GN=LOC111497455 PE=3 SV=1) HSP 1 Score: 667.2 bits (1720), Expect = 3.7e-188 Identity = 324/333 (97.30%), Postives = 329/333 (98.80%), Query Frame = 0
BLAST of Carg16006 vs. ExPASy TrEMBL
Match: A0A6J1HJQ9 (Phosphoglycerate mutase (2,3-diphosphoglycerate-dependent) OS=Cucurbita moschata OX=3662 GN=LOC111463561 PE=3 SV=1) HSP 1 Score: 603.6 bits (1555), Expect = 5.0e-169 Identity = 296/298 (99.33%), Postives = 296/298 (99.33%), Query Frame = 0
BLAST of Carg16006 vs. ExPASy TrEMBL
Match: A0A6J1HEY9 (Phosphoglycerate mutase (2,3-diphosphoglycerate-dependent) OS=Cucurbita moschata OX=3662 GN=LOC111463561 PE=3 SV=1) HSP 1 Score: 591.3 bits (1523), Expect = 2.6e-165 Identity = 290/292 (99.32%), Postives = 290/292 (99.32%), Query Frame = 0
BLAST of Carg16006 vs. ExPASy TrEMBL
Match: A0A6J1KQX6 (Phosphoglycerate mutase (2,3-diphosphoglycerate-dependent) OS=Cucurbita maxima OX=3661 GN=LOC111497455 PE=3 SV=1) HSP 1 Score: 578.9 bits (1491), Expect = 1.3e-161 Identity = 286/295 (96.95%), Postives = 290/295 (98.31%), Query Frame = 0
BLAST of Carg16006 vs. TAIR 10
Match: AT1G22170.1 (Phosphoglycerate mutase family protein ) HSP 1 Score: 327.8 bits (839), Expect = 1.0e-89 Identity = 156/223 (69.96%), Postives = 193/223 (86.55%), Query Frame = 0
BLAST of Carg16006 vs. TAIR 10
Match: AT1G78050.1 (phosphoglycerate/bisphosphoglycerate mutase ) HSP 1 Score: 315.1 bits (806), Expect = 6.9e-86 Identity = 152/241 (63.07%), Postives = 197/241 (81.74%), Query Frame = 0
BLAST of Carg16006 vs. TAIR 10
Match: AT5G04120.1 (Phosphoglycerate mutase family protein ) HSP 1 Score: 59.3 bits (142), Expect = 6.8e-09 Identity = 54/212 (25.47%), Postives = 94/212 (44.34%), Query Frame = 0
BLAST of Carg16006 vs. TAIR 10
Match: AT3G50520.1 (Phosphoglycerate mutase family protein ) HSP 1 Score: 56.6 bits (135), Expect = 4.4e-08 Identity = 49/188 (26.06%), Postives = 80/188 (42.55%), Query Frame = 0
BLAST of Carg16006 vs. TAIR 10
Match: AT5G22620.1 (phosphoglycerate/bisphosphoglycerate mutase family protein ) HSP 1 Score: 45.8 bits (107), Expect = 7.8e-05 Identity = 25/68 (36.76%), Postives = 41/68 (60.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|