Carg16002 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16002
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	PLAT domain-containing protein 3-like
Location	Carg_Chr07: 2379985 .. 2380718 (-)
RNA-Seq Expression	Carg16002
Synteny	Carg16002

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGGCAGAAAAATGGCGTCAAAATGTGCACTACCGTTTCTTATCCTCTCGCACCTCCTCCTCCTCCTCCTACTCTCCACCGCCGCCGTGCCGGAGCCTCTAGATGTAAGAACACCACCATCCTCCGCCCTCTCAAAAGCATTGAATAAAATGAACTAACCATGTGTTAATTTGAAATGGTGCAGGGCGGGGAGTGCGGTTACTTAATCTATGCCCAAACAGGGACGGTGAAGAAGGCCGGCACTCACTCAACCATCGGCCTGGAGGTGAAGACGGCGTCTGGGGAGGGGATTTGGGTGCCTAATTTGGAGGAATGGGGTGGAATTATGGGTCCAGACTATAACTTCTTTGAGACCGGGAGATTGGATACCTTCACTGGCAGAGGGCCTTGCCTCACCTCCCCTATTTGCTCTCTCAATTTGACCTCCAATGGCTCCGGTCCTTACCACGCTTGGTACTGTGACTACGTCGAGGTCACGGCCTCTGCCCCAGGCCATCCTTGCCACAAGCAGCGCTTCTCAGTCAACCAGTGGCTTTCCACTGACCAGGAGCCCTACAGCCTCACCGCTGTTGTGGACTATTGTGGGGCTCGGCCATCCCCCAGTGTGTATGACTTGGTTTTCTAAATCTCTACTCTTCTCATTGGAGTACACAAATAAATAAATATCGATATTTAAATTTAAATCATCTAAACAATCTAATAAACTATCTTCTTTGTTTTTTACATCAACACA

mRNA sequence

CAAGGCAGAAAAATGGCGTCAAAATGTGCACTACCGTTTCTTATCCTCTCGCACCTCCTCCTCCTCCTCCTACTCTCCACCGCCGCCGTGCCGGAGCCTCTAGATGGCGGGGAGTGCGGTTACTTAATCTATGCCCAAACAGGGACGGTGAAGAAGGCCGGCACTCACTCAACCATCGGCCTGGAGGTGAAGACGGCGTCTGGGGAGGGGATTTGGGTGCCTAATTTGGAGGAATGGGGTGGAATTATGGGTCCAGACTATAACTTCTTTGAGACCGGGAGATTGGATACCTTCACTGGCAGAGGGCCTTGCCTCACCTCCCCTATTTGCTCTCTCAATTTGACCTCCAATGGCTCCGGTCCTTACCACGCTTGGTACTGTGACTACGTCGAGGTCACGGCCTCTGCCCCAGGCCATCCTTGCCACAAGCAGCGCTTCTCAGTCAACCAGTGGCTTTCCACTGACCAGGAGCCCTACAGCCTCACCGCTGTTGTGGACTATTGTGGGGCTCGGCCATCCCCCAGTGTGTATGACTTGGTTTTCTAAATCTCTACTCTTCTCATTGGAGTACACAAATAAATAAATATCGATATTTAAATTTAAATCATCTAAACAATCTAATAAACTATCTTCTTTGTTTTTTACATCAACACA

Coding sequence (CDS)

ATGGCGTCAAAATGTGCACTACCGTTTCTTATCCTCTCGCACCTCCTCCTCCTCCTCCTACTCTCCACCGCCGCCGTGCCGGAGCCTCTAGATGGCGGGGAGTGCGGTTACTTAATCTATGCCCAAACAGGGACGGTGAAGAAGGCCGGCACTCACTCAACCATCGGCCTGGAGGTGAAGACGGCGTCTGGGGAGGGGATTTGGGTGCCTAATTTGGAGGAATGGGGTGGAATTATGGGTCCAGACTATAACTTCTTTGAGACCGGGAGATTGGATACCTTCACTGGCAGAGGGCCTTGCCTCACCTCCCCTATTTGCTCTCTCAATTTGACCTCCAATGGCTCCGGTCCTTACCACGCTTGGTACTGTGACTACGTCGAGGTCACGGCCTCTGCCCCAGGCCATCCTTGCCACAAGCAGCGCTTCTCAGTCAACCAGTGGCTTTCCACTGACCAGGAGCCCTACAGCCTCACCGCTGTTGTGGACTATTGTGGGGCTCGGCCATCCCCCAGTGTGTATGACTTGGTTTTCTAA

Protein sequence

MASKCALPFLILSHLLLLLLLSTAAVPEPLDGGECGYLIYAQTGTVKKAGTHSTIGLEVKTASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHAWYCDYVEVTASAPGHPCHKQRFSVNQWLSTDQEPYSLTAVVDYCGARPSPSVYDLVF

Homology

[Close]

BLAST of Carg16002 vs. NCBI nr
Match: KAG7026836.1 (PLAT domain-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 375.9 bits (964), Expect = 1.9e-100
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MASKCALPFLILSHLLLLLLLSTAAVPEPLDGGECGYLIYAQTGTVKKAGTHSTIGLEVK 60
           MASKCALPFLILSHLLLLLLLSTAAVPEPLDGGECGYLIYAQTGTVKKAGTHSTIGLEVK
Sbjct: 1   MASKCALPFLILSHLLLLLLLSTAAVPEPLDGGECGYLIYAQTGTVKKAGTHSTIGLEVK 60

Query: 61  TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHA 120
           TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHA
Sbjct: 61  TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHA 120

Query: 121 WYCDYVEVTASAPGHPCHKQRFSVNQWLSTDQEPYSLTAVVDYCGARPSPSVYDLVF 178
           WYCDYVEVTASAPGHPCHKQRFSVNQWLSTDQEPYSLTAVVDYCGARPSPSVYDLVF
Sbjct: 121 WYCDYVEVTASAPGHPCHKQRFSVNQWLSTDQEPYSLTAVVDYCGARPSPSVYDLVF 177

[Close]

BLAST of Carg16002 vs. NCBI nr
Match: XP_022963077.1 (PLAT domain-containing protein 3-like [Cucurbita moschata])

HSP 1 Score: 369.4 bits (947), Expect = 1.7e-98
Identity = 174/177 (98.31%), Postives = 175/177 (98.87%), Query Frame = 0


Query: 1   MASKCALPFLILSHLLLLLLLSTAAVPEPLDGGECGYLIYAQTGTVKKAGTHSTIGLEVK 60
           MASK ALPFLILSHLLLLLLLSTAAVPEPLDGGECGYLIY QTGTVKKAGTHSTIGLEVK
Sbjct: 1   MASKSALPFLILSHLLLLLLLSTAAVPEPLDGGECGYLIYVQTGTVKKAGTHSTIGLEVK 60

Query: 61  TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHA 120
           TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHA
Sbjct: 61  TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHA 120

Query: 121 WYCDYVEVTASAPGHPCHKQRFSVNQWLSTDQEPYSLTAVVDYCGARPSPSVYDLVF 178
           WYCDYVEVTASAPGHPCHKQRFSVNQWL+TDQEPYSLTAVVDYCGARPSPSVYDLVF
Sbjct: 121 WYCDYVEVTASAPGHPCHKQRFSVNQWLATDQEPYSLTAVVDYCGARPSPSVYDLVF 177

[Close]

BLAST of Carg16002 vs. NCBI nr
Match: KAG6594871.1 (PLAT domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 367.1 bits (941), Expect = 8.7e-98
Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MASKCALPFLILSHLLLLLLLSTAAVPEPLDGGECGYLIYAQTGTVKKAGTHSTIGLEVK 60
           MASK ALPFLILSHLLLLLLLSTAAVPEPLDGGECGYLIY QTGTVKKAGTHSTIGLEVK
Sbjct: 1   MASKSALPFLILSHLLLLLLLSTAAVPEPLDGGECGYLIYVQTGTVKKAGTHSTIGLEVK 60

Query: 61  TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHA 120
           TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHA
Sbjct: 61  TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHA 120

Query: 121 WYCDYVEVTASAPGHPCHKQRFSVNQWLSTDQEPYSLTAVVDYCGARPSPSVYDLVF 178
           WYCDYVEVTASAP HPCHKQRFSVNQWL+TDQEPYSLTAVVDYCGARPSPSVYDLVF
Sbjct: 121 WYCDYVEVTASAPAHPCHKQRFSVNQWLATDQEPYSLTAVVDYCGARPSPSVYDLVF 177

[Close]

BLAST of Carg16002 vs. NCBI nr
Match: XP_023518309.1 (PLAT domain-containing protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 348.6 bits (893), Expect = 3.2e-92
Identity = 165/177 (93.22%), Postives = 170/177 (96.05%), Query Frame = 0


Query: 1   MASKCALPFLILSHLLLLLLLSTAAVPEPLDGGECGYLIYAQTGTVKKAGTHSTIGLEVK 60
           MASK ALPFLILSH   LLLLSTAAVPE +DGGECGYLIY QTGTVKKAGTHSTIGLEVK
Sbjct: 1   MASKSALPFLILSH---LLLLSTAAVPEAVDGGECGYLIYVQTGTVKKAGTHSTIGLEVK 60

Query: 61  TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHA 120
           TASGEGI VPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSP+CSLNLTSNGSGPYHA
Sbjct: 61  TASGEGILVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPVCSLNLTSNGSGPYHA 120

Query: 121 WYCDYVEVTASAPGHPCHKQRFSVNQWLSTDQEPYSLTAVVDYCGARPSPSVYDLVF 178
           WYCDYVEVTASAPGHPCHKQRFSVNQWL+TDQEPYSLTAVVDYCGARP+PSVYD+VF
Sbjct: 121 WYCDYVEVTASAPGHPCHKQRFSVNQWLATDQEPYSLTAVVDYCGARPAPSVYDVVF 174

[Close]

BLAST of Carg16002 vs. NCBI nr
Match: XP_023004029.1 (PLAT domain-containing protein 3-like [Cucurbita maxima] >XP_023004030.1 PLAT domain-containing protein 3-like [Cucurbita maxima])

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-91
Identity = 163/177 (92.09%), Postives = 167/177 (94.35%), Query Frame = 0


Query: 1   MASKCALPFLILSHLLLLLLLSTAAVPEPLDGGECGYLIYAQTGTVKKAGTHSTIGLEVK 60
           MASK ALPFLIL+H   LLLLSTAAVPE +DGGECGYLIY QTGTVKKAGTHSTIGLEVK
Sbjct: 1   MASKSALPFLILAH---LLLLSTAAVPEAVDGGECGYLIYVQTGTVKKAGTHSTIGLEVK 60

Query: 61  TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHA 120
           TASGEGIWVPNLEEWGGIMGPDYNFFETGRLD FTGRGPCLTSPICSLNLTSNGSGPYHA
Sbjct: 61  TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDIFTGRGPCLTSPICSLNLTSNGSGPYHA 120

Query: 121 WYCDYVEVTASAPGHPCHKQRFSVNQWLSTDQEPYSLTAVVDYCGARPSPSVYDLVF 178
           WYCDYVEVTASAPGHPCHKQRFSVNQWL+TD EPYSLTAVVDYCG RP PSVYD+VF
Sbjct: 121 WYCDYVEVTASAPGHPCHKQRFSVNQWLATDHEPYSLTAVVDYCGVRPDPSVYDVVF 174

[Close]

BLAST of Carg16002 vs. ExPASy Swiss-Prot
Match: O65660 (PLAT domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=PLAT1 PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.0e-40
Identity = 79/163 (48.47%), Postives = 103/163 (63.19%), Query Frame = 0


Query: 10  LILSHLLLLLLLSTAAVPEPLDGGECGYLIYAQTGTVKKAGTHSTIGLEVKTASGEGIWV 69
           ++L  LLLL  +S  A  E  D  +C Y  Y +TG++ KAGT S I   +    G+ I +
Sbjct: 6   VLLPFLLLLATVSAVAFAE--DDPDCVYTFYLRTGSIWKAGTDSIISARIYDKDGDYIGI 65

Query: 70  PNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHAWYCDYVEVT 129
            NL+ W G+MGPDYN+FE G LD F+GR PCL SPIC+LNLTS+GSG +H WY +YVE+T
Sbjct: 66  KNLQAWAGLMGPDYNYFERGNLDIFSGRAPCLPSPICALNLTSDGSGDHHGWYVNYVEIT 125

Query: 130 ASAPGHPCHKQRFSVNQWLSTDQEPYSLTAVVDYCGARPSPSV 173
            +     C  Q F + QWL+TD  PY LTAV + C  +   SV
Sbjct: 126 TAGVHAQCSTQDFEIEQWLATDTSPYELTAVRNNCPVKLRDSV 166

[Close]

BLAST of Carg16002 vs. ExPASy Swiss-Prot
Match: Q9SIE7 (PLAT domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PLAT2 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.8e-37
Identity = 75/155 (48.39%), Postives = 100/155 (64.52%), Query Frame = 0


Query: 10  LILSHLLLLLLLSTAAVPEPLDGGECGYLIYAQTGTVKKAGTHSTIGLEVKTASGEGIWV 69
           L LS LL++  +S  A+ +  D  +C Y  + +TG+  KAGT S I   V    G+ I +
Sbjct: 8   LFLSLLLVIATVSAVALAD--DEADCVYTFFLRTGSTFKAGTDSIISARVYDKYGDYIGI 67

Query: 70  PNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHAWYCDYVEVT 129
            NLE WGG+MGP YN++E G LD F+G+ PCL SP+CSLNLTS+GSG +H WY +YVEVT
Sbjct: 68  RNLEAWGGLMGPGYNYYERGNLDIFSGKAPCLPSPVCSLNLTSDGSGDHHGWYVNYVEVT 127

Query: 130 ASAPGHPCHKQRFSVNQWLSTDQEPYSLTAVVDYC 165
            +     C  Q F V QWL++D  PY L+AV + C
Sbjct: 128 TAGVHAKCSYQSFDVEQWLASDTSPYELSAVRNNC 160

[Close]

BLAST of Carg16002 vs. ExPASy Swiss-Prot
Match: Q2V2V3 (PLAT domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PLAT3 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.6e-25
Identity = 48/104 (46.15%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 55  IGLEVKTASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNG 114
           + L +  + G+   + +L  WGG+MGP +++FE G LD F+G G CL+ P+C++NLTS+G
Sbjct: 1   MSLRLYDSYGQDAVISDLVSWGGLMGPFHDYFERGNLDIFSGLGSCLSGPVCAMNLTSDG 60

Query: 115 SGPYHAWYCDYVEVTAS-APGHPCHKQRFSVNQWLSTDQEPYSL 158
           SG +H WYC+YVEVT S +    C +++F V QWL+ D  PY L
Sbjct: 61  SGDHHGWYCNYVEVTMSESRRRSCSQEKFEVEQWLARDASPYEL 104

[Close]

BLAST of Carg16002 vs. ExPASy TrEMBL
Match: A0A6J1HE92 (PLAT domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111463386 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 8.4e-99
Identity = 174/177 (98.31%), Postives = 175/177 (98.87%), Query Frame = 0


Query: 1   MASKCALPFLILSHLLLLLLLSTAAVPEPLDGGECGYLIYAQTGTVKKAGTHSTIGLEVK 60
           MASK ALPFLILSHLLLLLLLSTAAVPEPLDGGECGYLIY QTGTVKKAGTHSTIGLEVK
Sbjct: 1   MASKSALPFLILSHLLLLLLLSTAAVPEPLDGGECGYLIYVQTGTVKKAGTHSTIGLEVK 60

Query: 61  TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHA 120
           TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHA
Sbjct: 61  TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHA 120

Query: 121 WYCDYVEVTASAPGHPCHKQRFSVNQWLSTDQEPYSLTAVVDYCGARPSPSVYDLVF 178
           WYCDYVEVTASAPGHPCHKQRFSVNQWL+TDQEPYSLTAVVDYCGARPSPSVYDLVF
Sbjct: 121 WYCDYVEVTASAPGHPCHKQRFSVNQWLATDQEPYSLTAVVDYCGARPSPSVYDLVF 177

[Close]

BLAST of Carg16002 vs. ExPASy TrEMBL
Match: A0A6J1KV14 (PLAT domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111497461 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 5.9e-92
Identity = 163/177 (92.09%), Postives = 167/177 (94.35%), Query Frame = 0


Query: 1   MASKCALPFLILSHLLLLLLLSTAAVPEPLDGGECGYLIYAQTGTVKKAGTHSTIGLEVK 60
           MASK ALPFLIL+H   LLLLSTAAVPE +DGGECGYLIY QTGTVKKAGTHSTIGLEVK
Sbjct: 1   MASKSALPFLILAH---LLLLSTAAVPEAVDGGECGYLIYVQTGTVKKAGTHSTIGLEVK 60

Query: 61  TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHA 120
           TASGEGIWVPNLEEWGGIMGPDYNFFETGRLD FTGRGPCLTSPICSLNLTSNGSGPYHA
Sbjct: 61  TASGEGIWVPNLEEWGGIMGPDYNFFETGRLDIFTGRGPCLTSPICSLNLTSNGSGPYHA 120

Query: 121 WYCDYVEVTASAPGHPCHKQRFSVNQWLSTDQEPYSLTAVVDYCGARPSPSVYDLVF 178
           WYCDYVEVTASAPGHPCHKQRFSVNQWL+TD EPYSLTAVVDYCG RP PSVYD+VF
Sbjct: 121 WYCDYVEVTASAPGHPCHKQRFSVNQWLATDHEPYSLTAVVDYCGVRPDPSVYDVVF 174

[Close]

BLAST of Carg16002 vs. ExPASy TrEMBL
Match: A0A6J1BY14 (PLAT domain-containing protein 3-like OS=Momordica charantia OX=3673 GN=LOC111005762 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.4e-64
Identity = 126/176 (71.59%), Postives = 142/176 (80.68%), Query Frame = 0


Query: 1   MASKCALPFLILSHLLLLLLLSTAAVPEPL----------DGGECGYLIYAQTGTVKKAG 60
           MASK  LPFLILS +LLL + ST +V   L           GGEC Y+IY QTGTVKKAG
Sbjct: 1   MASKSLLPFLILS-VLLLPIFSTVSVDGSLPDDGQGGGGGGGGECAYVIYVQTGTVKKAG 60

Query: 61  THSTIGLEVKTASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLT--SPICSL 120
           THSTI LE+KT +GEGI +PNLEEWGGIMGP+YNFFETGRLDTFTGRGPCLT   PICSL
Sbjct: 61  THSTISLELKTGAGEGISIPNLEEWGGIMGPNYNFFETGRLDTFTGRGPCLTYPDPICSL 120

Query: 121 NLTSNGSGPYHAWYCDYVEVTASAPGHPCHKQRFSVNQWLSTDQEPYSLTAVVDYC 165
           NLTS+ SGPYH WYCDYVEVT SAP HPC KQRFSV++WL+ D+EP++LTA+VDYC
Sbjct: 121 NLTSDASGPYHDWYCDYVEVTVSAPAHPCTKQRFSVDRWLARDREPFTLTAIVDYC 175

[Close]

BLAST of Carg16002 vs. ExPASy TrEMBL
Match: A0A2P5AEB2 (PLAT/LH2 domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_352530 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 9.2e-45
Identity = 85/150 (56.67%), Postives = 111/150 (74.00%), Query Frame = 0


Query: 16  LLLLLLSTAAVPEPLD-GGECGYLIYAQTGTVKKAGTHSTIGLEVKTASGEGIWVPNLEE 75
           LLLL LS  A+ +PLD   +C Y IY +TG++ KAGT S I +    ++G G+ + NLE 
Sbjct: 11  LLLLSLSFIAIAQPLDKDPDCVYTIYIRTGSIFKAGTDSNINVRFYDSNGYGVEITNLES 70

Query: 76  WGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHAWYCDYVEVTASAPG 135
           WGG+MGP YN++E G LD F+GRGPCLT+PIC+LNLTS+GSGP+H WYC+YVEVT +   
Sbjct: 71  WGGLMGPGYNYYERGNLDIFSGRGPCLTAPICALNLTSDGSGPHHGWYCNYVEVTTTGVH 130

Query: 136 HPCHKQRFSVNQWLSTDQEPYSLTAVVDYC 165
            PC +Q F+V QWL+TD  PY LTA+ +YC
Sbjct: 131 TPCAQQTFTVEQWLATDTSPYELTAIRNYC 160

[Close]

BLAST of Carg16002 vs. ExPASy TrEMBL
Match: A0A2P5C1U6 (PLAT/LH2 domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_191250 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.0e-43
Identity = 85/156 (54.49%), Postives = 112/156 (71.79%), Query Frame = 0


Query: 10  LILSHLLLLLLLSTAAVPEPLD-GGECGYLIYAQTGTVKKAGTHSTIGLEVKTASGEGIW 69
           LILS LLL +     A+ +PLD   +C Y IY +TG++ KAGT S I +    ++G G+ 
Sbjct: 7   LILSVLLLSISFIAIAIAQPLDKDPDCVYTIYIRTGSIFKAGTDSNINVRFYNSNGYGVE 66

Query: 70  VPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHAWYCDYVEV 129
           + NLE WGG+MGP YN+FE G LD F+GRGPCLT+PIC+LN+TS+GSGP+H WYC+YVEV
Sbjct: 67  ITNLESWGGLMGPGYNYFERGNLDIFSGRGPCLTAPICALNVTSDGSGPHHGWYCNYVEV 126

Query: 130 TASAPGHPCHKQRFSVNQWLSTDQEPYSLTAVVDYC 165
           T +     C +Q F+V QWL+TD  PY LTA+ +YC
Sbjct: 127 TTTGVHTACAQQTFTVEQWLATDTSPYELTAIRNYC 162

[Close]

BLAST of Carg16002 vs. TAIR 10
Match: AT4G39730.1 (Lipase/lipooxygenase, PLAT/LH2 family protein )

HSP 1 Score: 165.6 bits (418), Expect = 3.6e-41
Identity = 79/163 (48.47%), Postives = 103/163 (63.19%), Query Frame = 0


Query: 10  LILSHLLLLLLLSTAAVPEPLDGGECGYLIYAQTGTVKKAGTHSTIGLEVKTASGEGIWV 69
           ++L  LLLL  +S  A  E  D  +C Y  Y +TG++ KAGT S I   +    G+ I +
Sbjct: 6   VLLPFLLLLATVSAVAFAE--DDPDCVYTFYLRTGSIWKAGTDSIISARIYDKDGDYIGI 65

Query: 70  PNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHAWYCDYVEVT 129
            NL+ W G+MGPDYN+FE G LD F+GR PCL SPIC+LNLTS+GSG +H WY +YVE+T
Sbjct: 66  KNLQAWAGLMGPDYNYFERGNLDIFSGRAPCLPSPICALNLTSDGSGDHHGWYVNYVEIT 125

Query: 130 ASAPGHPCHKQRFSVNQWLSTDQEPYSLTAVVDYCGARPSPSV 173
            +     C  Q F + QWL+TD  PY LTAV + C  +   SV
Sbjct: 126 TAGVHAQCSTQDFEIEQWLATDTSPYELTAVRNNCPVKLRDSV 166

[Close]

BLAST of Carg16002 vs. TAIR 10
Match: AT2G22170.1 (Lipase/lipooxygenase, PLAT/LH2 family protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-38
Identity = 75/155 (48.39%), Postives = 100/155 (64.52%), Query Frame = 0


Query: 10  LILSHLLLLLLLSTAAVPEPLDGGECGYLIYAQTGTVKKAGTHSTIGLEVKTASGEGIWV 69
           L LS LL++  +S  A+ +  D  +C Y  + +TG+  KAGT S I   V    G+ I +
Sbjct: 8   LFLSLLLVIATVSAVALAD--DEADCVYTFFLRTGSTFKAGTDSIISARVYDKYGDYIGI 67

Query: 70  PNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNGSGPYHAWYCDYVEVT 129
            NLE WGG+MGP YN++E G LD F+G+ PCL SP+CSLNLTS+GSG +H WY +YVEVT
Sbjct: 68  RNLEAWGGLMGPGYNYYERGNLDIFSGKAPCLPSPVCSLNLTSDGSGDHHGWYVNYVEVT 127

Query: 130 ASAPGHPCHKQRFSVNQWLSTDQEPYSLTAVVDYC 165
            +     C  Q F V QWL++D  PY L+AV + C
Sbjct: 128 TAGVHAKCSYQSFDVEQWLASDTSPYELSAVRNNC 160

[Close]

BLAST of Carg16002 vs. TAIR 10
Match: AT5G65158.1 (Lipase/lipooxygenase, PLAT/LH2 family protein )

HSP 1 Score: 115.9 bits (289), Expect = 3.2e-26
Identity = 48/104 (46.15%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 55  IGLEVKTASGEGIWVPNLEEWGGIMGPDYNFFETGRLDTFTGRGPCLTSPICSLNLTSNG 114
           + L +  + G+   + +L  WGG+MGP +++FE G LD F+G G CL+ P+C++NLTS+G
Sbjct: 1   MSLRLYDSYGQDAVISDLVSWGGLMGPFHDYFERGNLDIFSGLGSCLSGPVCAMNLTSDG 60

Query: 115 SGPYHAWYCDYVEVTAS-APGHPCHKQRFSVNQWLSTDQEPYSL 158
           SG +H WYC+YVEVT S +    C +++F V QWL+ D  PY L
Sbjct: 61  SGDHHGWYCNYVEVTMSESRRRSCSQEKFEVEQWLARDASPYEL 104

The following BLAST results are available for this feature:

BLAST of Carg16002 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026836.1	1.9e-100	100.00	PLAT domain-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022963077.1	1.7e-98	98.31	PLAT domain-containing protein 3-like [Cucurbita moschata]	[more]
KAG6594871.1	8.7e-98	97.74	PLAT domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023518309.1	3.2e-92	93.22	PLAT domain-containing protein 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_023004029.1	1.2e-91	92.09	PLAT domain-containing protein 3-like [Cucurbita maxima] >XP_023004030.1 PLAT do...	[more]

BLAST of Carg16002 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65660	5.0e-40	48.47	PLAT domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=PLAT1 PE=1 S...	[more]
Q9SIE7	1.8e-37	48.39	PLAT domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PLAT2 PE=2 S...	[more]
Q2V2V3	4.6e-25	46.15	PLAT domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PLAT3 PE=4 S...	[more]

BLAST of Carg16002 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HE92	8.4e-99	98.31	PLAT domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111463...	[more]
A0A6J1KV14	5.9e-92	92.09	PLAT domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC11149746...	[more]
A0A6J1BY14	1.4e-64	71.59	PLAT domain-containing protein 3-like OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A2P5AEB2	9.2e-45	56.67	PLAT/LH2 domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_352...	[more]
A0A2P5C1U6	1.0e-43	54.49	PLAT/LH2 domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]

BLAST of Carg16002 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39730.1	3.6e-41	48.47	Lipase/lipooxygenase, PLAT/LH2 family protein	[more]
AT2G22170.1	1.3e-38	48.39	Lipase/lipooxygenase, PLAT/LH2 family protein	[more]
AT5G65158.1	3.2e-26	46.15	Lipase/lipooxygenase, PLAT/LH2 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.60.20	PLAT/LH2 domain	coord: 36..154 e-value: 1.7E-16 score: 62.4
None	No IPR available	PANTHER	PTHR31718:SF0	PLAT DOMAIN-CONTAINING PROTEIN 1	coord: 33..166
None	No IPR available	PANTHER	PTHR31718	FAMILY NOT NAMED	coord: 33..166
IPR001024	PLAT/LH2 domain	PFAM	PF01477	PLAT	coord: 37..159 e-value: 1.4E-12 score: 48.2
IPR001024	PLAT/LH2 domain	PROSITE	PS50095	PLAT	coord: 35..162 score: 19.8395
IPR036392	PLAT/LH2 domain superfamily	SUPERFAMILY	49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 37..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16002-RA	Carg16002-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding