Carg15851 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15851
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 19296179 .. 19296583 (-)
RNA-Seq ExpressionCarg15851
SyntenyCarg15851
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATTATCAAATGATTTTCAGTAATGGTACAAGACAATGAAAATGGAAGTGAAGAAAGGGAAGAAAAGGAACTTTCAATTCCTGCAAATTTACTTCTTACCATGGAATTTTGGGCCGTCGGCATTTATGGCTTCTCGCCGGCAGTCAAGTCGGCAGGAGAGGAGTGCCATGGTGCTATGGCCAGCATTCTACTGGCTAATCGGCAATCGAGAAGGTACACCCCCTTGAAATCGTTGTTTCTTTTGATCATGAGTATGGTAGCATTTCGATGAGATAAGAACTTGTGAAATCCTGGCTTTGTTTTTTATGAGAGCTCTCATATGAACATCTGGTATAAATTTTGACCTTGATTGTAGCTCATGGGGAATGCTAACAGGTGGGTGCTTTGAATCTTTGATCATGTAA

mRNA sequence

CAATTATCAAATGATTTTCAGTAATGGTACAAGACAATGAAAATGGAAGTGAAGAAAGGGAAGAAAAGGAACTTTCAATTCCTGCAAATTTACTTCTTACCATGGAATTTTGGGCCGTCGGCATTTATGGCTTCTCGCCGGCAGTCAAGTCGGCAGGAGAGGAGTGCCATGGTGCTATGGCCAGCATTCTACTGGCTAATCGGCAATCGAGAAGCTCATGGGGAATGCTAACAGGTGGGTGCTTTGAATCTTTGATCATGTAA

Coding sequence (CDS)

ATGGTACAAGACAATGAAAATGGAAGTGAAGAAAGGGAAGAAAAGGAACTTTCAATTCCTGCAAATTTACTTCTTACCATGGAATTTTGGGCCGTCGGCATTTATGGCTTCTCGCCGGCAGTCAAGTCGGCAGGAGAGGAGTGCCATGGTGCTATGGCCAGCATTCTACTGGCTAATCGGCAATCGAGAAGCTCATGGGGAATGCTAACAGGTGGGTGCTTTGAATCTTTGATCATGTAA

Protein sequence

MVQDNENGSEEREEKELSIPANLLLTMEFWAVGIYGFSPAVKSAGEECHGAMASILLANRQSRSSWGMLTGGCFESLIM
Homology
BLAST of Carg15851 vs. NCBI nr
Match: KAG7032926.1 (hypothetical protein SDJN02_06977 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.2 bits (409), Expect = 1.9e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1  MVQDNENGSEEREEKELSIPANLLLTMEFWAVGIYGFSPAVKSAGEECHGAMASILLANR 60
          MVQDNENGSEEREEKELSIPANLLLTMEFWAVGIYGFSPAVKSAGEECHGAMASILLANR
Sbjct: 1  MVQDNENGSEEREEKELSIPANLLLTMEFWAVGIYGFSPAVKSAGEECHGAMASILLANR 60

Query: 61 QSRSSWGMLTGGCFESLIM 80
          QSRSSWGMLTGGCFESLIM
Sbjct: 61 QSRSSWGMLTGGCFESLIM 79

BLAST of Carg15851 vs. NCBI nr
Match: KAG6602247.1 (40S ribosomal protein S17-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.3 bits (321), Expect = 3.0e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1   MVQDNENGSEEREEKELSIPANLLLTMEFWAVGIYGFSPAVKSAGEECHGAMASILLANR 60
           MVQDNENGSEEREEKELSIPANLLLTMEFWAVGIYGFSPAVKSAGEECHGAMASILLANR
Sbjct: 110 MVQDNENGSEEREEKELSIPANLLLTMEFWAVGIYGFSPAVKSAGEECHGAMASILLANR 169

Query: 61  QSRS 65
           +SRS
Sbjct: 170 RSRS 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7032926.11.9e-36100.00hypothetical protein SDJN02_06977 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6602247.13.0e-2698.4440S ribosomal protein S17-4, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15851-RACarg15851-RAmRNA