Carg15747 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15747
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 18629476 .. 18630461 (-)
RNA-Seq Expression	Carg15747
Synteny	Carg15747

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACCCAGTTAAAGACATCATTTCCATGGTAGTTTTACAGCCCAAAATATCAACCAAACCACCAACGTCTGGAGACTCTTCCATACCCAAGCTCAATGTTCTATTCCCCAAGATGCAAGCCTCATTCTCCTCGTTTAGATAGGGATCATTATCGCCCGAACCGGAATCACTTCCCAACCTTCCCTCGAATAGTAGAGTATCTACATGTTCGGGGCCTCTAAATGTCCAATCCTCCCCTTCAGCCGCTAGCCCCGATACATTCGTGCAGACATTATTCATAATCACTCCCAGTTCCCTAACTGGTTCAAACATCTGCCCCTCACTAGAACTAGATGGGAAGGAAGCCATCTCCTGGCGTGACTGCTGCTTGGGAAGAGGTTGACTCGAACAGCTGACCAGACGAGTACCAGAGCCGCAAAACGGTTCCCCGATCACAGCCGGGTCATCACATGAACCCATCTATCTTGCCAATAACGAAAACCAATCGATACCCATAACTCAAAATTTGCATGGAGCAACAAAATAGAAAAACAAGTAAAATGTGTGTACCAATAACCTCCAATCAAATCCCGGTTCCACTAGCTCACAACATCTTCATCAATCGGAGAAAACAAGAACAACTCTCATCGCATTCGAAAGAAATTCCAACAGCCAGATAACACACCTAAAATGGCACTACTACCCGAACTATCTGCAGCATCAAAACCCTAATTTCAGAATTTGCAATGCAATGCAGGAACATCAACGCCGGAAAACACCGAGTTCTGCCAAAAAGAAAACCAAATAAAGAAAGAAAAAGTCATAAAGAATCAAAGAAAGACGGCAAATTACCTGGGATGAAGACGAAATTGAGTAAACGGATGAAGTTGCGCAGTTTTCCAATGGCGTCAAAATTGCTGCTCTTACGAATTCCGTTGGCAACCAAAGAAAGCAATAGATCAAATAGCAAGAAAAGAGAATCGACGCGGGATGTTTACGCCTTATAA

mRNA sequence

TGACCCAGTTAAAGACATCATTTCCATGGTAGTTTTACAGCCCAAAATATCAACCAAACCACCAACGTCTGGAGACTCTTCCATACCCAAGCTCAATGTTCTATTCCCCAAGATGCAAGCCTCATTCTCCTCGTTTAGATAGGGATCATTATCGCCCGAACCGGAATCACTTCCCAACCTTCCCTCGAATAGTAGAGTATCTACATGTTCGGGGCCTCTAAATGTCCAATCCTCCCCTTCAGCCGCTAGCCCCGATACATTCGTGCAGACATTATTCATAATCACTCCCAGTTCCCTAACTGGTTCAAACATCTGCCCCTCACTAGAACTAGATGGGAAGGAAGCCATCTCCTGGCGTGACTGCTGCTTGGGAAGAGGTTGACTCGAACAGCTGACCAGACGAGTACCAGAGCCGCAAAACGGTTCCCCGATCACAGCCGGGTCATCACATGAACCCATCTATCTTGCCAATAACGAAAACCAATCGATACCCATAACTCAAAATTTGCATGGAGCAACAAAATAGAAAAACAAAATTTGCAATGCAATGCAGGAACATCAACGCCGGAAAACACCGAGTTCTGCCAAAAAGAAAACCAAATAAAGAAAGAAAAAGTCATAAAGAATCAAAGAAAGACGGCAAATTACCTGGGATGAAGACGAAATTGAGTAAACGGATGAAGTTGCGCAGTTTTCCAATGGCGTCAAAATTGCTGCTCTTACGAATTCCGTTGGCAACCAAAGAAAGCAATAGATCAAATAGCAAGAAAAGAGAATCGACGCGGGATGTTTACGCCTTATAA

Coding sequence (CDS)

ATGGAGCAACAAAATAGAAAAACAAAATTTGCAATGCAATGCAGGAACATCAACGCCGGAAAACACCGAGTTCTGCCAAAAAGAAAACCAAATAAAGAAAGAAAAAGTCATAAAGAATCAAAGAAAGACGGCAAATTACCTGGGATGAAGACGAAATTGAGTAAACGGATGAAGTTGCGCAGTTTTCCAATGGCGTCAAAATTGCTGCTCTTACGAATTCCGTTGGCAACCAAAGAAAGCAATAGATCAAATAGCAAGAAAAGAGAATCGACGCGGGATGTTTACGCCTTATAA

Protein sequence

MEQQNRKTKFAMQCRNINAGKHRVLPKRKPNKERKSHKESKKDGKLPGMKTKLSKRMKLRSFPMASKLLLLRIPLATKESNRSNSKKRESTRDVYAL

Homology

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BLAST of Carg15747 vs. NCBI nr
Match: KAG7032824.1 (hypothetical protein SDJN02_06874 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.4 bits (459), Expect = 3.7e-42
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MEQQNRKTKFAMQCRNINAGKHRVLPKRKPNKERKSHKESKKDGKLPGMKTKLSKRMKLR 60
          MEQQNRKTKFAMQCRNINAGKHRVLPKRKPNKERKSHKESKKDGKLPGMKTKLSKRMKLR
Sbjct: 1  MEQQNRKTKFAMQCRNINAGKHRVLPKRKPNKERKSHKESKKDGKLPGMKTKLSKRMKLR 60

Query: 61 SFPMASKLLLLRIPLATKESNRSNSKKRESTRDVYAL 98
          SFPMASKLLLLRIPLATKESNRSNSKKRESTRDVYAL
Sbjct: 61 SFPMASKLLLLRIPLATKESNRSNSKKRESTRDVYAL 97

The following BLAST results are available for this feature:

BLAST of Carg15747 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032824.1	3.7e-42	100.00	hypothetical protein SDJN02_06874 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Carg15747 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg15747 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg15747 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15747-RA	Carg15747-RA	mRNA