Carg15708 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15708
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-type domain-containing protein
Location	Carg_Chr19: 8788978 .. 8789624 (+)
RNA-Seq Expression	Carg15708
Synteny	Carg15708

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCGGCAAAATGGAGGGCGGAGATGGGCCAATTTGAAGCAACGGCTAGGATTGAAGGGGATGGGATGCTGTGGAGGTTCGTGGAGTCCGACGTCGTCGACTTTGACGATGATTGAAGGCTTAAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGAAGATGGGGCTCGGAGCTCTGCATCTTCCGGTGTAAACTTGGCGATGGCTCTTGCGGCGGAAAGAAATTTGAGGACCGACGAAGGAGGCCCCACTGGCGCCGGTGATGTGAAATCACTGATGAGATTATTTGAAGAAATGGACGGTGGGGATTGGAAGACAAAAAGAAAGGAGAGTGAGAATACCGGTGATTGGATGTGCTGCGTTTGCATGGAGAGGAGTAAAGGTGCTGCCTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAATTATGGCTCAACAGAGGCACGTGTCCTATTTGCAACCGTTCGATCATTGAGATTCTTGATATTTTTTAAATTTGTAACATTTTCGTAAATTATTCTCTCTATGTGATTTTTGTTTTCTTTATGGGGTTTCCCCCCCCCCCCCCTTTTCCCTTCTCAAATGCTGGTAGGTTAAGGAACTAATCATAGTAAAGGAGGAGAATAGTTGA

mRNA sequence

ATGGAGCGGCAAAATGGAGGGCGGAGATGGGCCAATTTGAAGCAACGGCTAGGATTGAAGGGGATGGGATGCTGTGGAGGTTCGTGGAGTCCGACGTCGTCGACTTTGACGATGATTGAAGGCTTAAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGAAGATGGGGCTCGGAGCTCTGCATCTTCCGGTGTAAACTTGGCGATGGCTCTTGCGGCGGAAAGAAATTTGAGGACCGACGAAGGAGGCCCCACTGGCGCCGGTGATGTGAAATCACTGATGAGATTATTTGAAGAAATGGACGGTGGGGATTGGAAGACAAAAAGAAAGGAGAGTGAGAATACCGGTGATTGGATGTGCTGCGTTTGCATGGAGAGGAGTAAAGGTGCTGCCTTTATTCCCTGTGGACACACCTTCTGTAGGGTTAAGGAACTAATCATAGTAAAGGAGGAGAATAGTTGA

Coding sequence (CDS)

ATGGAGCGGCAAAATGGAGGGCGGAGATGGGCCAATTTGAAGCAACGGCTAGGATTGAAGGGGATGGGATGCTGTGGAGGTTCGTGGAGTCCGACGTCGTCGACTTTGACGATGATTGAAGGCTTAAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGAAGATGGGGCTCGGAGCTCTGCATCTTCCGGTGTAAACTTGGCGATGGCTCTTGCGGCGGAAAGAAATTTGAGGACCGACGAAGGAGGCCCCACTGGCGCCGGTGATGTGAAATCACTGATGAGATTATTTGAAGAAATGGACGGTGGGGATTGGAAGACAAAAAGAAAGGAGAGTGAGAATACCGGTGATTGGATGTGCTGCGTTTGCATGGAGAGGAGTAAAGGTGCTGCCTTTATTCCCTGTGGACACACCTTCTGTAGGGTTAAGGAACTAATCATAGTAAAGGAGGAGAATAGTTGA

Protein sequence

MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARSSASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWMCCVCMERSKGAAFIPCGHTFCRVKELIIVKEENS

Homology

[Close]

BLAST of Carg15708 vs. NCBI nr
Match: KAG7012019.1 (hypothetical protein SDJN02_26927, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 316.2 bits (809), Expect = 1.5e-82
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS
Sbjct: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM
Sbjct: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVKELIIVKEENS 155
           CCVCMERSKGAAFIPCGHTFCRVKELIIVKEENS
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVKELIIVKEENS 154

[Close]

BLAST of Carg15708 vs. NCBI nr
Match: XP_022953088.1 (RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022953089.1 RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022969345.1 RNA-binding protein MEX3B-like [Cucurbita maxima] >XP_022969346.1 RNA-binding protein MEX3B-like [Cucurbita maxima] >XP_023511758.1 RNA-binding protein MEX3B-like [Cucurbita pepo subsp. pepo] >XP_023511759.1 RNA-binding protein MEX3B-like [Cucurbita pepo subsp. pepo] >KAG6572419.1 hypothetical protein SDJN03_29147, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 295.4 bits (755), Expect = 2.8e-76
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS
Sbjct: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM
Sbjct: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRV 144
           CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRV 143

[Close]

BLAST of Carg15708 vs. NCBI nr
Match: KAA0061653.1 (zf-C3HC4_3 domain-containing protein [Cucumis melo var. makuwa] >TYK05853.1 zf-C3HC4_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 268.5 bits (685), Expect = 3.6e-68
Identity = 130/143 (90.91%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MER N GRRWANLKQRLGLKGMGCC GSWSPTSSTLTMIEG SLS HGSSRS REDG RS
Sbjct: 1   MERANRGRRWANLKQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQREDGGRS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SA+SG+NLAMALAAERNLR+DEGGPTGA DVKSLMRLFEEMDGGDWKTKRKE EN GDWM
Sbjct: 61  SAASGMNLAMALAAERNLRSDEGGPTGASDVKSLMRLFEEMDGGDWKTKRKEGENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRV 144
           CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRV 143

[Close]

BLAST of Carg15708 vs. NCBI nr
Match: KGN47968.1 (hypothetical protein Csa_002927 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 1.7e-65
Identity = 126/143 (88.11%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MER N  RRW NL+QRLGLKGMGCC GSWSPTSSTLTMIEG SLS HGSSRS  EDG RS
Sbjct: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SA+SG+NLAMALAAERNLR DEGGPTG  DVKSLMRLFEEMDGGDWKTKRKESEN GDWM
Sbjct: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRV 144
           CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRV 143

[Close]

BLAST of Carg15708 vs. NCBI nr
Match: XP_023531397.1 (uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo] >XP_023531398.1 uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.4 bits (633), Expect = 3.9e-62
Identity = 123/144 (85.42%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGL-KGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGAR 60
           MER N G+RWANLKQRLGL KGMGCCGGSWS TSSTLTMI+G+ LSRHGSSRSHR+DG R
Sbjct: 62  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 121

Query: 61  SSASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDW 120
           SSA+SG+NLAMALAAERNL T+EGGPT  G+VKSLMRLFEE+DGGDWKT+RKESEN GDW
Sbjct: 122 SSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLMRLFEEIDGGDWKTRRKESENNGDW 181

Query: 121 MCCVCMERSKGAAFIPCGHTFCRV 144
           +CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 182 LCCVCMERSKGAAFIPCGHTFCRV 203

[Close]

BLAST of Carg15708 vs. ExPASy TrEMBL
Match: A0A6J1HXI8 (RNA-binding protein MEX3B-like OS=Cucurbita maxima OX=3661 GN=LOC111468383 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS
Sbjct: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM
Sbjct: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRV 144
           CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRV 143

[Close]

BLAST of Carg15708 vs. ExPASy TrEMBL
Match: A0A6J1GME5 (RNA-binding protein MEX3B-like OS=Cucurbita moschata OX=3662 GN=LOC111455597 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS
Sbjct: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM
Sbjct: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRV 144
           CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRV 143

[Close]

BLAST of Carg15708 vs. ExPASy TrEMBL
Match: A0A5A7V0I3 (Zf-C3HC4_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00070 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.8e-68
Identity = 130/143 (90.91%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MER N GRRWANLKQRLGLKGMGCC GSWSPTSSTLTMIEG SLS HGSSRS REDG RS
Sbjct: 1   MERANRGRRWANLKQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQREDGGRS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SA+SG+NLAMALAAERNLR+DEGGPTGA DVKSLMRLFEEMDGGDWKTKRKE EN GDWM
Sbjct: 61  SAASGMNLAMALAAERNLRSDEGGPTGASDVKSLMRLFEEMDGGDWKTKRKEGENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRV 144
           CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRV 143

[Close]

BLAST of Carg15708 vs. ExPASy TrEMBL
Match: A0A0A0KEL6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421620 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 8.2e-66
Identity = 126/143 (88.11%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
           MER N  RRW NL+QRLGLKGMGCC GSWSPTSSTLTMIEG SLS HGSSRS  EDG RS
Sbjct: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60

Query: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
           SA+SG+NLAMALAAERNLR DEGGPTG  DVKSLMRLFEEMDGGDWKTKRKESEN GDWM
Sbjct: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRV 144
           CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRV 143

[Close]

BLAST of Carg15708 vs. ExPASy TrEMBL
Match: A0A6J1JM70 (RING finger protein 141-like OS=Cucurbita maxima OX=3661 GN=LOC111485923 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.5e-62
Identity = 122/144 (84.72%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MERQNGGRRWANLKQRLGL-KGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGAR 60
           MER N G+RWANLKQRLGL KGMGCCGG+WS TSSTLTMI+G+ LSRHGSSRSHR+DG R
Sbjct: 1   MERPNRGQRWANLKQRLGLMKGMGCCGGAWSSTSSTLTMIDGIGLSRHGSSRSHRDDGIR 60

Query: 61  SSASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDW 120
           SSA+SG+NLAMALAAERNL T+EGGPT  G+VKSLMRLFEE+DGGDWKT+RKESEN GDW
Sbjct: 61  SSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLMRLFEEIDGGDWKTRRKESENNGDW 120

Query: 121 MCCVCMERSKGAAFIPCGHTFCRV 144
           +CCVCMERSKGAAFIPCGHTFCRV
Sbjct: 121 LCCVCMERSKGAAFIPCGHTFCRV 142

[Close]

BLAST of Carg15708 vs. TAIR 10
Match: AT4G03965.1 (RING/U-box superfamily protein )

HSP 1 Score: 89.0 bits (219), Expect = 3.7e-18
Identity = 65/151 (43.05%), Postives = 84/151 (55.63%), Query Frame = 0


Query: 8   RRWANLKQRLGLKGMGCCGGSWS--PTSSTLTMIEGLSLSRHGSSRSHREDGARSSASSG 67
           RR   LK+RLG K +GCCG +W    TS+T    +    +R  S   H         + G
Sbjct: 37  RRKRTLKERLGFKRIGCCGPTWGLRLTSNTGEDDDEPFENRLVSGSDH----VTGPLNQG 96

Query: 68  VNLAMALAAERNLRTDEGGPTGA-GDVK-SLMRLFEE------MDGGDWKTKRKESENT- 127
           +NLA ALAAERN RT+E   +G+   +K SLMRL EE      ++  + +     + +T 
Sbjct: 97  MNLATALAAERNYRTEETEASGSLTPLKVSLMRLLEETAERVVVEENETERVTASASSTV 156

Query: 128 ----GDWMCCVCMERSKGAAFIPCGHTFCRV 144
                D +CCVCM R KGAAFIPCGHTFCRV
Sbjct: 157 RGVNNDSVCCVCMGRKKGAAFIPCGHTFCRV 183

[Close]

BLAST of Carg15708 vs. TAIR 10
Match: AT4G22250.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 8.5e-15
Identity = 70/175 (40.00%), Postives = 80/175 (45.71%), Query Frame = 0


Query: 1   MERQNGG----RRWANLKQRLGLKGMGCCGGSW-----------SPTS-----STLTMIE 60
           + RQ  G    RR   LK+RL  K +GCCG +W           SPTS       L +  
Sbjct: 27  LRRQMSGHDLTRRKRTLKERLRFKCIGCCGPTWNLRLTNNTTLHSPTSRDDEIEELQIET 86

Query: 61  GLSL-SRHGSSRSHREDGARSSASSGVNLAMALAAERNLR--TDEGGPTGAGDVKSLMRL 120
           GL L S HGS              +G+NLA AL AER  R  + E          SLMRL
Sbjct: 87  GLVLESDHGS-------------GTGMNLATALEAERYNRGESTEAEADMTPRRVSLMRL 146

Query: 121 FEEMDGGDWKTKRKESE---------NTGDWMCCVCMERSKGAAFIPCGHTFCRV 144
            EE          KE+E            D +CCVCM R KGAAFIPCGHTFCRV
Sbjct: 147 LEETAEKIVDDDGKETEILTASIGTLTGNDSVCCVCMGRKKGAAFIPCGHTFCRV 188

[Close]

BLAST of Carg15708 vs. TAIR 10
Match: AT1G62370.1 (RING/U-box superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-12
Identity = 58/156 (37.18%), Postives = 67/156 (42.95%), Query Frame = 0


Query: 5   NGGRR----WANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 64
           NGG R    W  LKQRL    +GCCG    P +  L   E   +          ++    
Sbjct: 32  NGGDRTMSKWTTLKQRLRFDWVGCCG---KPLTLRLRQAETPIVVDDDDDEEESQNQVVD 91

Query: 65  SASSGV-------------NLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWK 124
            +  G              NLA ALA ER     E     A     LMRL  E DG D  
Sbjct: 92  FSDPGTGTELDCLTRGSTRNLAEALAEERLAHVTE--EETAVTKVPLMRLLAESDGCDST 151

Query: 125 TKRKESENTGDWMCCVCMERSKGAAFIPCGHTFCRV 144
           T    +    D +CCVCM R KGAAFIPCGHT+CRV
Sbjct: 152 T----TWLGNDPLCCVCMGREKGAAFIPCGHTYCRV 178

[Close]

BLAST of Carg15708 vs. TAIR 10
Match: AT3G25030.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 53/149 (35.57%), Postives = 68/149 (45.64%), Query Frame = 0


Query: 10  WANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHG----SSRSHREDGARSSASSG 69
           W +L+++L LK  G    S +   S  T I       H      S S       SS    
Sbjct: 76  WKSLREKLRLKRNGSVWISSNSIPSLDTPIPNRDNVSHQLGFLLSNSGNVTEEASSVEGR 135

Query: 70  VNLAMALAAERNLRTDEGGPTGAGDVK----SLMRLFEEMDGG------DWKTKRKESEN 129
           + L   LA ER L   E       +V+    SLM L EE +G       D + + + +  
Sbjct: 136 IRLGAVLAEERALSAREEETPAEREVEPARMSLMELLEENEGQMSFVSVDGEAEEEVAAV 195

Query: 130 T-GDWMCCVCMERSKGAAFIPCGHTFCRV 144
           T  +  CCVCM RSKGAAFIPCGHTFCR+
Sbjct: 196 TAAEISCCVCMVRSKGAAFIPCGHTFCRL 224

[Close]

BLAST of Carg15708 vs. TAIR 10
Match: AT3G25030.2 (RING/U-box superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 53/149 (35.57%), Postives = 68/149 (45.64%), Query Frame = 0


Query: 10  WANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHG----SSRSHREDGARSSASSG 69
           W +L+++L LK  G    S +   S  T I       H      S S       SS    
Sbjct: 76  WKSLREKLRLKRNGSVWISSNSIPSLDTPIPNRDNVSHQLGFLLSNSGNVTEEASSVEGR 135

Query: 70  VNLAMALAAERNLRTDEGGPTGAGDVK----SLMRLFEEMDGG------DWKTKRKESEN 129
           + L   LA ER L   E       +V+    SLM L EE +G       D + + + +  
Sbjct: 136 IRLGAVLAEERALSAREEETPAEREVEPARMSLMELLEENEGQMSFVSVDGEAEEEVAAV 195

Query: 130 T-GDWMCCVCMERSKGAAFIPCGHTFCRV 144
           T  +  CCVCM RSKGAAFIPCGHTFCR+
Sbjct: 196 TAAEISCCVCMVRSKGAAFIPCGHTFCRL 224

The following BLAST results are available for this feature:

BLAST of Carg15708 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012019.1	1.5e-82	100.00	hypothetical protein SDJN02_26927, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022953088.1	2.8e-76	100.00	RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022953089.1 RNA-binding ...	[more]
KAA0061653.1	3.6e-68	90.91	zf-C3HC4_3 domain-containing protein [Cucumis melo var. makuwa] >TYK05853.1 zf-C...	[more]
KGN47968.1	1.7e-65	88.11	hypothetical protein Csa_002927 [Cucumis sativus]	[more]
XP_023531397.1	3.9e-62	85.42	uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo] >XP_023531398....	[more]

BLAST of Carg15708 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg15708 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HXI8	1.3e-76	100.00	RNA-binding protein MEX3B-like OS=Cucurbita maxima OX=3661 GN=LOC111468383 PE=4 ...	[more]
A0A6J1GME5	1.3e-76	100.00	RNA-binding protein MEX3B-like OS=Cucurbita moschata OX=3662 GN=LOC111455597 PE=...	[more]
A0A5A7V0I3	1.8e-68	90.91	Zf-C3HC4_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KEL6	8.2e-66	88.11	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421620 P...	[more]
A0A6J1JM70	5.5e-62	84.72	RING finger protein 141-like OS=Cucurbita maxima OX=3661 GN=LOC111485923 PE=4 SV...	[more]

BLAST of Carg15708 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03965.1	3.7e-18	43.05	RING/U-box superfamily protein	[more]
AT4G22250.1	8.5e-15	40.00	RING/U-box superfamily protein	[more]
AT1G62370.1	3.0e-12	37.18	RING/U-box superfamily protein	[more]
AT3G25030.1	1.1e-09	35.57	RING/U-box superfamily protein	[more]
AT3G25030.2	1.1e-09	35.57	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 101..143 e-value: 1.4E-7 score: 32.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..64
None	No IPR available	PANTHER	PTHR46629:SF18	LIGASE, PUTATIVE-RELATED	coord: 1..143
None	No IPR available	PANTHER	PTHR46629	OS01G0917900 PROTEIN	coord: 1..143
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 112..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15708-RA	Carg15708-RA	mRNA