Carg15678 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15678
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr19: 8928017 .. 8930932 (-)
RNA-Seq ExpressionCarg15678
SyntenyCarg15678
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGGCCTAATCGTACCGGTAAACTCTGCCTGCGCTTCCGTCAGGCCTTCATCGTCAAGCATGAACATCCTCCATAAGAACATAACCCATTCATTAACTTTTTCTGCTGCCCTCTTCACCATCTCTGTGTTCCCATATGTTCTACAAACTGTGACCCCTCGTATGATTGCATCTGCCTTAATTGGCATGGTTTTTAGGAGCTGCTCTGCTTCTTCAAGAAACCCAGCTCGGCTGAACATGTCCACCGTTAAATTGTAGTGTTTTGTTGATGCATCAATTCTGTATGTGTTTTTTGTCGGTGAGAAAAATCCGCTGCCTTCATTCTCCATAAAGCTAACAGAATCTGGTTTGAGACTACTTCCTTTTCGCAGCCATTCACTGCCAGGCCAAAGATCGTGGAGTTCCAACTAAATATCCTCTGTTGGGCATTTTCTCAAACACCTGAAGGGCCTTCCCTATGCTACCACATTTGCTGTACATGTCTATGATTGCTGTTGCTACATTGGCACTCAACTCTAAATTCTTCTTCTTTACGTACTCGTTTTCCATTCTCCTTGCCGAAAGTGCTCCAATTTGAGTTGAAGCATTTAACAAGCTCACCATACTAAACTCACTAGGCTGGATACTCTCTTCTTGCATTTTGACAAACAGCTTAAGAGCTTCTTTGAACATCCCGTTTCTAACATACCCACCAATCATAGAATTCCAAGAGATCGGGTTTCTAACAGGCATTTTATCGAACAGCTTTCCTCGACTCACCAATTTCCCCACATTTAGCCACACCCCTAATCATGGAATTCCAGGCAACGCCATCGAATTCCATTTCTTGTTTAAGATTCGACGTGCTTTATAGAAACCCGCCATCATGGGCAAGTCGAAGTGGAGAGTAAGCTTTGAAAACTGATGGGTAAGTCAATCTTTGGGGTTCTACTTGTGAAGAAACCAACATGTCGATGAAAAGAGAGCAATTTCAGGTTTTGAGCTTTGAGAGAAGCCTCTTAGTACAGTACTCCAAGAAAAAGGATTCGAATTTCGCATTTGCCGAAAGACCAAATATGTGAAGGGAGCCCACAAAAATTTACCAACATATTTTTTCACTTTTGATTCTCAGGTTTTAGTTTTTACCTCACAGAACTCACGAAGTAGCTGAAGAAGGTGTTGAACTTTCCAGTGGTGTGGCCATGGCAGAAACTCCGTCATCCAATTCCAATCTAAGGCGGGGCCACCATCCACCCAAAAAAAGAAGTCATCATACACATGGGCCATCGGTATTGTTACTTTCTAATCCGTCTATAGTGCAAACAGCAGGCTTAGGATTCACTTTTAGACTGTCCACTTTATAATCATTTTCACATTCACCATTTTTTGTTTGGAAACTTTTGGCCTGGACTGGACCTGAATTGAGGACTTCCATTCAAAATGTGCGGTGCTTCTTCTGCACGGGTTCTGTTTACAATATTCATGCTCTGGTTGGATCTTAAGATTATTCATATCCTTAAGAGCTTTCTTTAGTTAATGTTTGGGATTTGGGCTGCTTTGAGTGAATCAAAGGCAGTTTTATACATATGTATATGAACATTCTTGTCAGGATTGATGATCTTCTAACTGAATTTCCTTCAACTACCTTGGACTTGTTGTATATTTGGCAAGGGATAGTTAGTCGAAAGATTCTGTGGTGACCCACTGTCCTCCAAATTAGGATTTCCCATTAATCAACTGCGCTGTAGTTAGTCAAGATTGTGGGATCAGAAGGAAATAATTAGGCAGGAAAAAGATTATCCCATTTTTAATGGATCCATGCTGGAGTGGCCAGAAAGGAGAAGGGAAAAGAAAACATATCATTACCATCATTACAACAACAATTATCAGTAAGCAGCCCACATTAAAGAACTAAATTTCAATCATATCTTTCTTTTTGTTAACTATCCTCGGGCTTCCCCCATTTCCCTCTCTTTTCCTTCCTCTGTTTGTCATTTGCTCGCCCCCTACACCCTATGTCTACTCTCTCTCTCTCTCCACCCAAAGAAAAAGGGAGCACTTGGTACTTTCGAAATGGATATTTTACTGGACAAGGAGTGTAAAGTCTTCAACTTTCGGACAAGGTAATGATGCCACTCAACAATATCATATCATCTTTTCATGCCCAACTCTCTATATTTAAACCAGGACAAAAGTAGGAAACTCTAGTAATTAAGGAACTAACGCCTACAAGTGGGAGGATGAGGAACAGCCCGATCATTAGAGGAAGAACAGGAGGACTGACCCAGGAATGGCTCATACAAAGCCTCATATTCCTCATTCTTGCTCATTTTCTCTGTCCAGGTGACTGATTATTCATTTCTTCTCTACATTTGGAGTATATATGATGATCAAACGTCTACTTAAATATTTCTATTCTAGGCATTTACTTCATTCCAATTGAATTTTCTTTCCTTTCTACAGACGAAGCATGTACCTGTTCTTCTATCTTAACTGTCTGCTACACAACCTTAAATGCCTATTAATTTTTTCTCTGCGTATTATTCAAATTTGTATTTTTTTTTCCTTATGGCCGTGTTTATCGTTTAATATTCATCTCTTACAAATATTTCTCATTTGGGTCTCCTAAGAATAACTGTTCTGAGATGTTGATTGTGATTATTACTGAAATTTAAACTACTTTTTAAATTCAAGATGTAGTAAGAAACAATTTTGATCTTGTTGACTCAGAATCTTATGACAAAGATAATTTAGAGTAAACAATCAGATATTAGAAGTTTCACTCATGGTTGCTCTGGAATCTTTATATGATATGCACTTGTTATTCTAATGACGGTGAATTTCAACTGAGTTTTTTTTGTGTCTTCATGAAGGTTTTATTTTGTTTTGTTCCATTTCCAAGTTCAGGAAGATGAGTTTATTATTGTTCCTTAG

mRNA sequence

ATGTCAGGCCTAATCGTACCGGTAAACTCTGCCTGCGCTTCCGTCAGGCCTTCATCGTCAAGCATGAACATCCTCCATAAGAACATAACCCATTCATTAACTTTTTCTGCTGCCCTCTTCACCATCTCTGTGTTCCCATATGTTCTACAAACTGTGACCCCTCGTATGATTGCATCTGCCTTAATTGGCATGTTTTTACCTCACAGAACTCACGAAGTAGCTGAAGAAGGTGTTGAACTTTCCAGTGGTGTGGCCATGGCAGAAACTCCGTCATCCAATTCCAATCTAAGGCGGGGCCACCATCCACCCAAAAAAAGAAGTCATCATACACATGGGCCATCGGAAGATGAGTTTATTATTGTTCCTTAG

Coding sequence (CDS)

ATGTCAGGCCTAATCGTACCGGTAAACTCTGCCTGCGCTTCCGTCAGGCCTTCATCGTCAAGCATGAACATCCTCCATAAGAACATAACCCATTCATTAACTTTTTCTGCTGCCCTCTTCACCATCTCTGTGTTCCCATATGTTCTACAAACTGTGACCCCTCGTATGATTGCATCTGCCTTAATTGGCATGTTTTTACCTCACAGAACTCACGAAGTAGCTGAAGAAGGTGTTGAACTTTCCAGTGGTGTGGCCATGGCAGAAACTCCGTCATCCAATTCCAATCTAAGGCGGGGCCACCATCCACCCAAAAAAAGAAGTCATCATACACATGGGCCATCGGAAGATGAGTTTATTATTGTTCCTTAG

Protein sequence

MSGLIVPVNSACASVRPSSSSMNILHKNITHSLTFSAALFTISVFPYVLQTVTPRMIASALIGMFLPHRTHEVAEEGVELSSGVAMAETPSSNSNLRRGHHPPKKRSHHTHGPSEDEFIIVP
Homology
[Close]
BLAST of Carg15678 vs. NCBI nr
Match: KAG7012048.1 (hypothetical protein SDJN02_26956, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.0 bits (606), Expect = 4.2e-59
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 1   MSGLIVPVNSACASVRPSSSSMNILHKNITHSLTFSAALFTISVFPYVLQTVTPRMIASA 60
           MSGLIVPVNSACASVRPSSSSMNILHKNITHSLTFSAALFTISVFPYVLQTVTPRMIASA
Sbjct: 1   MSGLIVPVNSACASVRPSSSSMNILHKNITHSLTFSAALFTISVFPYVLQTVTPRMIASA 60

Query: 61  LIGMFLPHRTHEVAEEGVELSSGVAMAETPSSNSNLRRGHHPPKKRSHHTHGPSEDEFII 120
           LIGMFLPHRTHEVAEEGVELSSGVAMAETPSSNSNLRRGHHPPKKRSHHTHGPSEDEFII
Sbjct: 61  LIGMFLPHRTHEVAEEGVELSSGVAMAETPSSNSNLRRGHHPPKKRSHHTHGPSEDEFII 120

Query: 121 VP 123
           VP
Sbjct: 121 VP 122

The following BLAST results are available for this feature:
BLAST of Carg15678 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012048.14.2e-59100.00hypothetical protein SDJN02_26956, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg15678 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15678 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15678 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15678-RACarg15678-RAmRNA